BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0008.p
         (244 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313132|ref|YP_003777224.1| divalent heavy-metal cations tr...   455   e-129

>gi|300313132|ref|YP_003777224.1| divalent heavy-metal cations
           transporter transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 227

 Score =  455 bits (1170), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/227 (100%), Positives = 227/227 (100%)

Query: 18  MVERLVSLSVGIMLSTSLLHALPEAFESQAEPHTLFAVLLGGLLAFFLLEKTAILRHSHH 77
           MVERLVSLSVGIMLSTSLLHALPEAFESQAEPHTLFAVLLGGLLAFFLLEKTAILRHSHH
Sbjct: 1   MVERLVSLSVGIMLSTSLLHALPEAFESQAEPHTLFAVLLGGLLAFFLLEKTAILRHSHH 60

Query: 78  HEDDGHGHHHGHDKKEAGKAGWMILVGDGLHNFTDGILIAAAFLADPHLGLVTGLAIIAH 137
           HEDDGHGHHHGHDKKEAGKAGWMILVGDGLHNFTDGILIAAAFLADPHLGLVTGLAIIAH
Sbjct: 61  HEDDGHGHHHGHDKKEAGKAGWMILVGDGLHNFTDGILIAAAFLADPHLGLVTGLAIIAH 120

Query: 138 EIPQEIGDFIVLLNAGFSRTRAYVYNLICSLMAVAGGVLGYFMLERGMQWIPFVLVFASS 197
           EIPQEIGDFIVLLNAGFSRTRAYVYNLICSLMAVAGGVLGYFMLERGMQWIPFVLVFASS
Sbjct: 121 EIPQEIGDFIVLLNAGFSRTRAYVYNLICSLMAVAGGVLGYFMLERGMQWIPFVLVFASS 180

Query: 198 GFIYIAVSDLMPQMQRRATLRETIPQVILIAAGVLIVLALTHQAHAH 244
           GFIYIAVSDLMPQMQRRATLRETIPQVILIAAGVLIVLALTHQAHAH
Sbjct: 181 GFIYIAVSDLMPQMQRRATLRETIPQVILIAAGVLIVLALTHQAHAH 227


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.141    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 575,346
Number of extensions: 20271
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,226,865
Effective search space: 197525265
Effective search space used: 197525265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)