BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0007.p (307 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313131|ref|YP_003777223.1| LysR family transcription regul... 608 e-175 gi|300313102|ref|YP_003777194.1| LysR family transcription regul... 135 3e-33 gi|300312961|ref|YP_003777053.1| transcription regulator protein... 122 5e-29 gi|300312750|ref|YP_003776842.1| LysR family transcription regul... 118 5e-28 gi|300310637|ref|YP_003774729.1| LysR family transcription regul... 110 2e-25 >gi|300313131|ref|YP_003777223.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 608 bits (1569), Expect = e-175, Method: Compositional matrix adjust. Identities = 307/307 (100%), Positives = 307/307 (100%) Query: 1 MISIRQLRYFVEIVEARGYTRAAERLFVAQSALSRQIKELEADLDVVLLRREAKTFELTQ 60 MISIRQLRYFVEIVEARGYTRAAERLFVAQSALSRQIKELEADLDVVLLRREAKTFELTQ Sbjct: 1 MISIRQLRYFVEIVEARGYTRAAERLFVAQSALSRQIKELEADLDVVLLRREAKTFELTQ 60 Query: 61 AGQDFYERSRKILLDLDRAVAQARTIGKGEHGALRLLHSSSVPLTAPLGPMLNEALKAFP 120 AGQDFYERSRKILLDLDRAVAQARTIGKGEHGALRLLHSSSVPLTAPLGPMLNEALKAFP Sbjct: 61 AGQDFYERSRKILLDLDRAVAQARTIGKGEHGALRLLHSSSVPLTAPLGPMLNEALKAFP 120 Query: 121 GISLEISQAPSEYQAREIVEGSADIGLARLPILRANPNLASTVLYRERLVAAVPAGHRLA 180 GISLEISQAPSEYQAREIVEGSADIGLARLPILRANPNLASTVLYRERLVAAVPAGHRLA Sbjct: 121 GISLEISQAPSEYQAREIVEGSADIGLARLPILRANPNLASTVLYRERLVAAVPAGHRLA 180 Query: 181 QRQEVEIAELRDEFFVTVPHRDRGGLSYLVAERCIAHGFYPRVARATSRKNSLLSLVNAG 240 QRQEVEIAELRDEFFVTVPHRDRGGLSYLVAERCIAHGFYPRVARATSRKNSLLSLVNAG Sbjct: 181 QRQEVEIAELRDEFFVTVPHRDRGGLSYLVAERCIAHGFYPRVARATSRKNSLLSLVNAG 240 Query: 241 FGIAVVPQSMASTSLAAGVSFPALKDPDFHSEVALLRRRDAPAMVGQFVEAFVARLHEAG 300 FGIAVVPQSMASTSLAAGVSFPALKDPDFHSEVALLRRRDAPAMVGQFVEAFVARLHEAG Sbjct: 241 FGIAVVPQSMASTSLAAGVSFPALKDPDFHSEVALLRRRDAPAMVGQFVEAFVARLHEAG 300 Query: 301 LSAPAPG 307 LSAPAPG Sbjct: 301 LSAPAPG 307 >gi|300313102|ref|YP_003777194.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 135 bits (341), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 88/280 (31%), Positives = 142/280 (50%), Gaps = 5/280 (1%) Query: 1 MISIRQLRYFVEIVEARGYTRAAERLFVAQSALSRQIKELEADLDVVLLRREAKTFELTQ 60 MI +R L YF + E + RAAE L ++Q L+RQI LE +L L R + +LT Sbjct: 1 MIELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGAQLFDRSKRAIQLTA 60 Query: 61 AGQDFYERSRKILLDLDRAVAQARTIGKGEHGALRLLHSSSVPLTAPLGPMLNEALKAFP 120 AG+ FY + +I L+RA + G+ GAL++ S L + A+P Sbjct: 61 AGKYFYRDTTEIFKALERAKRNVSSSSTGKSGALKVGFMMSTAYNI-LPSVTRHYSAAYP 119 Query: 121 GISLEISQAPSEYQAREIVEGSADIGLARLPILRANPNLASTVLYRERLVAAVPAGHRLA 180 + + +++ A +I + D+G+ P L S +Y E L+A +P HRLA Sbjct: 120 EVDMRLTEYVPNLLATDIEDEKIDVGIMYRP--EDCRRLDSHTIYAEPLLAVLPRDHRLA 177 Query: 181 QRQEVEIAELRDEFFVTVPHRDRGGLSYLVAERCIAHGFYPRVARATSRKNSLLSLVNAG 240 RQ + AEL ++ F+++P + L+ + C HGF PR+ T+ + ++++LV G Sbjct: 178 GRQSISAAELAEDAFISIPRMIAPVVYDLIQQHCQLHGFRPRIVLETNLQQTIVNLVGEG 237 Query: 241 FGIAVVPQSMASTSLAAGVSFPALKDPDFHSEVALLRRRD 280 G+A+VP SM + L V P + P EVA++ +D Sbjct: 238 LGVALVPTSMQAMHLDTTVFKPLIGAP--MVEVAVIWNKD 275 >gi|300312961|ref|YP_003777053.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 122 bits (305), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 91/303 (30%), Positives = 150/303 (49%), Gaps = 15/303 (4%) Query: 2 ISIRQLRYFVEIVEARGYTRAAERLFVAQSALSRQIKELEADLDVVLLRREAKTFELTQA 61 + +R L+YF + ++RAAE L +AQ LSRQI++LE L V L+ R ++ LT A Sbjct: 1 MELRHLKYFNAVASTLSFSRAAELLHIAQPPLSRQIRQLEEMLGVELIDRASRPIALTMA 60 Query: 62 GQDFYERSRKILLDLDRAVAQARTIGKGEHGALRLLHSSSVPLTAPLGPMLNEALKAF-- 119 G+ FYE++ ++L L++ R I +G + VP + L +L E +K F Sbjct: 61 GKFFYEQTLQVLSRLEQIEEGTRVIARGRQHWFNI---GFVP--SALYGLLPEMIKRFRT 115 Query: 120 --PGISLEISQAPSEYQAREIVEGSADIGLARLPILRANPNLASTVLYRERLVAAVPAGH 177 P I + S+ + Q + G D+G RLPI ++P++ + E LVA P GH Sbjct: 116 EMPEIEIGFSEIVTMEQVEALKSGRIDVGFGRLPI--SDPDIVCETIVEEPLVAVFPLGH 173 Query: 178 RLAQRQEVEIAELRDEFFVTVPHRDRGGLSYLVAERCIAHGFYPRVARATSRKNSLLSLV 237 L R +V +A+L + F+ P R R + V + + P + + + + + LV Sbjct: 174 PLLARNKVTLAQLAAQRFILYPARPRPSYADQVLDIFSSRALRPSIVKEANEMQTAIGLV 233 Query: 238 NAGFGIAVVPQSMASTSLAAGVSFPALKDPDFHSEVAL-LRRRDAPAMVGQF--VEAFVA 294 AG G+ +VP+S+ + V + L + HS V + R D ++ + A +A Sbjct: 234 AAGVGVTLVPRSVQGLH-RSDVVYRPLSNKGVHSPVIMNFRANDRSLLLERLRTTAATIA 292 Query: 295 RLH 297 RLH Sbjct: 293 RLH 295 >gi|300312750|ref|YP_003776842.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 322 Score = 118 bits (296), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 89/285 (31%), Positives = 140/285 (49%), Gaps = 14/285 (4%) Query: 2 ISIRQLRYFVEIVEARGYTRAAERLFVAQSALSRQIKELEADLDVVLLRREAKTFELTQA 61 I +R LRYF+ + E T+AAER+ + Q LS+QI+ LE +L V L R + ELT + Sbjct: 19 IDLRLLRYFIAVAEEGHLTKAAERIGIQQPPLSQQIRVLERELGVTLFNRLPRGMELTDS 78 Query: 62 GQDFYERSRKILLDLDRAVAQARTIGKGEHGALRLLHSSSVPLTAPLGPMLNEALKAFPG 121 G +R +L LD VA R I +G+ G + + + S A L P ++ ++AF Sbjct: 79 GAALLIDARALLAQLDTTVASVRRIAQGKMGRIAVGFTES----ASLHPFVHSVIRAFRA 134 Query: 122 ISLEISQAPSEYQAREIVEG----SADIGLARLPILRANPNLASTVLYRERLVAAVPAGH 177 + +++ E E++E D+ R P+ + L + E +VAA+P H Sbjct: 135 DAPDVAMTVEESNTNELIEALRGKRLDLAFVRSPVGDSG-GLTIETMLEEDMVAALPIDH 193 Query: 178 RL---AQRQEVEIAELRDEFFVTVPHRDRGGLSYLVAERCIAHGFYPRVARATSRKNSLL 234 L +R+ + + L +E F+ + GL + C A GF P+V + + S L Sbjct: 194 PLVDGGKRKSIALHALAEESFIMTRRPNGPGLYDTIIAACHAAGFSPQVIQEARKNLSTL 253 Query: 235 SLVNAGFGIAVVPQSMASTSLAAGVSFPALKD-PDFHSEVALLRR 278 SLV AG G+ V+P SM + A GV + L PD + + L R Sbjct: 254 SLVAAGVGVTVIPASMTRVN-AEGVVYLKLTGAPDLKAPLHLAYR 297 >gi|300310637|ref|YP_003774729.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 326 Score = 110 bits (274), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 91/299 (30%), Positives = 145/299 (48%), Gaps = 11/299 (3%) Query: 2 ISIRQLRYFVEIVEARGYTRAAERLFVAQSALSRQIKELEADLDVVLLRREAKTFELTQA 61 + IRQL+YFV + R +TRA+E+L +AQ LSRQI+ LE +L V LL R ++ LT+A Sbjct: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLLLRNSRPLRLTEA 60 Query: 62 GQDFYERSRKILLDLDRAVAQARTIGKGEHGALRLLHSSSVPLTAPLGPMLNEALKA-FP 120 G+ FYE++ +IL LD+ + IG + L + +S L L PML L+ +P Sbjct: 61 GRVFYEQALQILNRLDQLKNATQQIGLNQRQTLSIGFVAST-LYGGL-PMLVRKLRQHYP 118 Query: 121 GISLEISQAPSEYQAREIVEGSADIGLARLPILRANP-NLASTVLYRERLVAAVPAGHRL 179 + +++ + S Q + G D+G R +R+N +A VL E+LV A+P L Sbjct: 119 EVDIQLLELTSMQQFAALKSGRIDVGFGR---IRSNDATVARIVLREEKLVLAIPPSFAL 175 Query: 180 A-QRQEVEIAELRDEFFVTVPHRDRGGLSYLVAERCIAHGFYPRVARATSRKNSLLSLVN 238 A Q V + E+ + + P R + + +P + L LV Sbjct: 176 AGSNQRVSLKEVHGQKLIVYPKEPRPSFADHILSLLNDQDIHPAEVHEVREIQTALGLVA 235 Query: 239 AGFGIAVVPQSMASTSLAAGVSFPALKDPDFHSEVALLRRRDAPAMVGQFVEAFVARLH 297 A GI ++P AS L + + + D S + L R + A + V+ VA ++ Sbjct: 236 AESGICLIP---ASARLRNDLHYRLIDDARATSPIILTHRINDNAWYIEAVKRLVADMY 291 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 934,480 Number of extensions: 39461 Number of successful extensions: 267 Number of sequences better than 1.0e-08: 49 Number of HSP's gapped: 229 Number of HSP's successfully gapped: 49 Length of query: 307 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 222 Effective length of database: 1,217,395 Effective search space: 270261690 Effective search space used: 270261690 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)