BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0005.p
         (300 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313129|ref|YP_003777221.1| drug/metabolite transporter (DM...   593   e-171
gi|300311553|ref|YP_003775645.1| drug/metabolite transporter (DM...    70   2e-13

>gi|300313129|ref|YP_003777221.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score =  593 bits (1529), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 300/300 (100%), Positives = 300/300 (100%)

Query: 1   MLVASFLFSIMGVCVKLASDYYSTSEIVLCRGLIGISVIAALVRVRGGTFRTPFPRDHLI 60
           MLVASFLFSIMGVCVKLASDYYSTSEIVLCRGLIGISVIAALVRVRGGTFRTPFPRDHLI
Sbjct: 6   MLVASFLFSIMGVCVKLASDYYSTSEIVLCRGLIGISVIAALVRVRGGTFRTPFPRDHLI 65

Query: 61  RGGVGVISLWLWFYSFSLLPVATATTLNYMSSIWIAVMLFAAAWWQGNKKFEWGLAATVV 120
           RGGVGVISLWLWFYSFSLLPVATATTLNYMSSIWIAVMLFAAAWWQGNKKFEWGLAATVV
Sbjct: 66  RGGVGVISLWLWFYSFSLLPVATATTLNYMSSIWIAVMLFAAAWWQGNKKFEWGLAATVV 125

Query: 121 LSFIGVALLMRPSLDADQLLGGAISLFSGVLSALVYLQVRKLGLLGEPEYRVVFYFSLTG 180
           LSFIGVALLMRPSLDADQLLGGAISLFSGVLSALVYLQVRKLGLLGEPEYRVVFYFSLTG
Sbjct: 126 LSFIGVALLMRPSLDADQLLGGAISLFSGVLSALVYLQVRKLGLLGEPEYRVVFYFSLTG 185

Query: 181 VLAGLVGSVATGRVPLWHSHSWQGAALVIMIGLTATLAQIAMTRAYRLGNTLVTANLQYT 240
           VLAGLVGSVATGRVPLWHSHSWQGAALVIMIGLTATLAQIAMTRAYRLGNTLVTANLQYT
Sbjct: 186 VLAGLVGSVATGRVPLWHSHSWQGAALVIMIGLTATLAQIAMTRAYRLGNTLVTANLQYT 245

Query: 241 GIVFSSLFGVLVWNDAPGWLGWLGMGVILASGLLATYHNHRSSQIAARNLPKVDPIATEV 300
           GIVFSSLFGVLVWNDAPGWLGWLGMGVILASGLLATYHNHRSSQIAARNLPKVDPIATEV
Sbjct: 246 GIVFSSLFGVLVWNDAPGWLGWLGMGVILASGLLATYHNHRSSQIAARNLPKVDPIATEV 305


>gi|300311553|ref|YP_003775645.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 314

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 113/243 (46%), Gaps = 23/243 (9%)

Query: 61  RGGVGVISLWLWFYSFSLLPVATATTLNYMSSIWIAVMLFAAAWWQGNKKF--EWGLAAT 118
           RG + + S  ++F    ++P+A  T +N+ + +   ++L  + W  G + +   W     
Sbjct: 89  RGALLLGSTLIFFSVLKIVPLAEGTAMNFCAPL---IVLAISPWLLGERSYLSRW---IA 142

Query: 119 VVLSFIGVALLMRPSLDADQLLGGAISLFSGVLSALVYLQVRKLGLLGEPEYRVVFYFSL 178
           V++ F G+ +++RPS D     G A+ L S +  AL+ +  RK      P    +FY +L
Sbjct: 143 VLVGFTGMLIVIRPSGDIPPY-GVALGLISALTQALLSILNRKASQADNPMV-TLFYGAL 200

Query: 179 TGVLAGLVGSVATGRVPL-WHSHSWQGAALVIMI--GLTATLAQIAMTRAYRLGNTLVTA 235
            G +      V+T  VP  W SH+     L I++  G+T+T+       AYR     V  
Sbjct: 201 VGSV------VSTLLVPFFWTSHTPTMVELAILVSTGITSTIGHFLQNSAYRHAEASVLT 254

Query: 236 NLQYTGIVFSSLFGVLVWNDAPGWLGWLGMGVILASGLLATYHNHRSSQIAARNLPKVDP 295
              Y  I+ +   G LV+   P  +  LG+ +I ASG+   Y  H+     A  LP  DP
Sbjct: 255 PFFYAQIISACGMGWLVFGQFPDRVTVLGIAIICASGIGIAYIEHKR----AHPLPPADP 310

Query: 296 IAT 298
           + +
Sbjct: 311 MES 313


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 947,380
Number of extensions: 40755
Number of successful extensions: 179
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 2
Length of query: 300
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 215
Effective length of database: 1,217,395
Effective search space: 261739925
Effective search space used: 261739925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)