BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0002.p
         (311 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313126|ref|YP_003777218.1| geranyltranstransferase [Herbas...   605   e-174
gi|300309704|ref|YP_003773796.1| octaprenyldiphosphate synthase ...   106   3e-24

>gi|300313126|ref|YP_003777218.1| geranyltranstransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 311

 Score =  605 bits (1559), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 307/311 (98%), Positives = 309/311 (99%)

Query: 1   MAAPGVIAAPAFAQWMGQVQSGMEEVLNRFLPSASVVPARLHEAMRYTAMDGGKRVRPLL 60
           MAAPGV+AAPAFAQWMGQVQSGMEEVLNRFLPSASVVPARLHEAMRYTAMDGGKRVRPLL
Sbjct: 1   MAAPGVVAAPAFAQWMGQVQSGMEEVLNRFLPSASVVPARLHEAMRYTAMDGGKRVRPLL 60

Query: 61  VYAAGELFDTPRALLERAAAAVEMIHVYSLVHDDMPCMDDDALRRGKPTVHIRYDEATAL 120
           VYAAGELFDTPRALLERAAAAVEMIHVYSLVHDDMPCMDDDALRRGKPTVHIRYDEATAL
Sbjct: 61  VYAAGELFDTPRALLERAAAAVEMIHVYSLVHDDMPCMDDDALRRGKPTVHIRYDEATAL 120

Query: 121 LVGDALQAQAFDTLAAPLESEPGSANAGLPARQLRMVKLLAEAAGSVGMCGGQAIDLASV 180
           LVGDALQAQAFDTLAAPLESE GSA+AGLPARQLRMVKLLAEAAGSVGMCGGQAIDLASV
Sbjct: 121 LVGDALQAQAFDTLAAPLESEAGSADAGLPARQLRMVKLLAEAAGSVGMCGGQAIDLASV 180

Query: 181 GMTLSLAELEQMHRLKTGALLRAAVLLGALGGKALTAAESAALDDYARAIGLAFQVVDDI 240
           GMTLSLAELEQMHRLKTGALLRAAVLLGALGGKALTAAESAALDDYARAIGLAFQVVDDI
Sbjct: 181 GMTLSLAELEQMHRLKTGALLRAAVLLGALGGKALTAAESAALDDYARAIGLAFQVVDDI 240

Query: 241 LDATADSATLGKTAGKDAADNKPTYVSILGLAESQALAGRLQADAHEALAPFGEKARRLR 300
           LDATADSATLGKTAGKDAADNKPTYVSILGLAESQALAGRLQADAHEALAPFG KARRLR
Sbjct: 241 LDATADSATLGKTAGKDAADNKPTYVSILGLAESQALAGRLQADAHEALAPFGGKARRLR 300

Query: 301 ELADLIVQRKT 311
           ELADLIVQRKT
Sbjct: 301 ELADLIVQRKT 311


>gi|300309704|ref|YP_003773796.1| octaprenyldiphosphate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 309

 Score =  106 bits (264), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 20/225 (8%)

Query: 41  LHEAMRYTAMDGGKRVRPLLVYAAGELFDTPRALLERAAAAVEMIHVYSLVHDDMPCMDD 100
           +++   Y    GGKR+RP+LV      F          AA +E IH  +L+HDD+  +D+
Sbjct: 19  VNQVAEYIISAGGKRLRPVLVVLIANAFGYKGEHHHSLAAVIEFIHTATLLHDDV--VDE 76

Query: 101 DALRRGKPTVHIRYDEATALLVGDALQAQAFDTLAAPLESEPGSANAGLPARQLRMVKLL 160
            +LRRGK T +  +  A ++LVGD L ++AF  + A           G P    R+++++
Sbjct: 77  SSLRRGKQTANAMFGNAASVLVGDFLYSRAFQMMVA----------VGNP----RVMEIV 122

Query: 161 AEAAGSVGMCGGQAIDLASV-GMTLSLAELEQMHRLKTGALLRAAVLLGALGGKALTAAE 219
           A+A   +    G+ + L ++    +      Q+ R KT  L  AA  +GAL   A  A  
Sbjct: 123 ADATNVI--AEGEVLQLLNMHNPDVDENGYLQVIRSKTAKLFEAASQIGALIAGADEAGI 180

Query: 220 SAALDDYARAIGLAFQVVDDILDATADSATLGKTAGKDAADNKPT 264
            AA + Y R+IG AFQ++DD+LD + +SA +GK  G D  + KPT
Sbjct: 181 EAAAE-YGRSIGTAFQLIDDVLDYSGNSAEIGKNVGDDLREGKPT 224


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 848,708
Number of extensions: 33041
Number of successful extensions: 146
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 2
Length of query: 311
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,217,395
Effective search space: 275131270
Effective search space used: 275131270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)