BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0001.p (621 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313125|ref|YP_003777217.1| 1-deoxy-D-xylulose 5-phosphate ... 1262 0.0 gi|300310438|ref|YP_003774530.1| transketolase, C-terminal subun... 127 3e-30 gi|300309646|ref|YP_003773738.1| transketolase C-terminal subuni... 77 6e-15 >gi|300313125|ref|YP_003777217.1| 1-deoxy-D-xylulose 5-phosphate synthase [Herbaspirillum seropedicae SmR1] Length = 621 Score = 1262 bits (3266), Expect = 0.0, Method: Compositional matrix adjust. Identities = 616/621 (99%), Positives = 618/621 (99%) Query: 1 MLLNTINDPADLRRLSRHQLKPLAEELRGFLLDSVSKTGGHLSSNLGTVELTIALHYVFN 60 MLLNTINDPADLRRLSRHQLKPLAEELRGFLLDSVSKTGGHLSSNLGTVELTIALHYVFN Sbjct: 1 MLLNTINDPADLRRLSRHQLKPLAEELRGFLLDSVSKTGGHLSSNLGTVELTIALHYVFN 60 Query: 61 TPEDRVVWDVGHQTYPHKILTGRRERMDTLRQQEGISGFPRRIESQYDTFGTAHSSTSIS 120 TPEDRVVWDVGHQTYPHKILTGRRERMDTLRQQEGISGFPRRIESQYDTFGTAHSSTSIS Sbjct: 61 TPEDRVVWDVGHQTYPHKILTGRRERMDTLRQQEGISGFPRRIESQYDTFGTAHSSTSIS 120 Query: 121 AALGMALAARTQGSDRHAIAVIGDGAMTAGMAFEALNNAGVHEDVKLLVILNDNDMSISP 180 AALGMALAARTQGSDRHAIAVIGDGAMTAGMAFEALNNAGVHEDVKLLVILNDNDMSISP Sbjct: 121 AALGMALAARTQGSDRHAIAVIGDGAMTAGMAFEALNNAGVHEDVKLLVILNDNDMSISP 180 Query: 181 PVGALNRYLARLMSGKFYARARDVGKSVLPGPVLELAKRLEEHAKGMVVPATMFEEFGFN 240 PVGALNRYLARLMSGKFYARARDVGKSVLPGPVLELAKRLEEHAKGMVVPATMFEEFGFN Sbjct: 181 PVGALNRYLARLMSGKFYARARDVGKSVLPGPVLELAKRLEEHAKGMVVPATMFEEFGFN 240 Query: 241 YIGPIDGHDLDSLVPTLQNLKHLKGPQFLHVVTKKGQGYKLAEADPVLYHGPGKFNPSEG 300 YIGPIDGHDLDSLVPTLQNLKHLKGPQFLHVVTKKGQGYKLAEADPVLYHGPGKFNPSEG Sbjct: 241 YIGPIDGHDLDSLVPTLQNLKHLKGPQFLHVVTKKGQGYKLAEADPVLYHGPGKFNPSEG 300 Query: 301 IKPSAGGKLTYTKVFGDWLCDMAAADDKLVGITPAMREGSGMVDFEKKFPNRYYDVGIAE 360 IKPSAGGKLTYTKVFGDWLCDMAAADDKLVGITPAMREGSGMVDFEKKFPNRYYDVGIAE Sbjct: 301 IKPSAGGKLTYTKVFGDWLCDMAAADDKLVGITPAMREGSGMVDFEKKFPNRYYDVGIAE 360 Query: 361 QHAVTFAAGMACEGMKPVVAIYSTFLQRAYDQLIHDVALQNLDVTFALDRAGLVGADGAT 420 QHAVTFAAGMACEGMKPVVAIYSTFLQRAYDQLIHDVALQNLDVTFALDRAGLVGADGAT Sbjct: 361 QHAVTFAAGMACEGMKPVVAIYSTFLQRAYDQLIHDVALQNLDVTFALDRAGLVGADGAT 420 Query: 421 HAGNYDLAFLRCIPNMVVMAASDENECRKMLSTAYQYPGPASVRYPRGAGIGAAVDQTLE 480 HAGNYDLAFLRCIPNMVVMAASDENECRKMLSTAYQYPGPASVRYPRGAGIGAAVDQTLE Sbjct: 421 HAGNYDLAFLRCIPNMVVMAASDENECRKMLSTAYQYPGPASVRYPRGAGIGAAVDQTLE 480 Query: 481 TLPLGRGEIRRQGKDVAILNFGSLLAPALGAADKLNATVANMRFIKPLDVELVKQLAASH 540 TLPLGRGEIRRQGK+VAIL FGSLLAP+LGA DKLNATVANMRFIKPLDVELVKQLAASH Sbjct: 481 TLPLGRGEIRRQGKNVAILAFGSLLAPSLGAGDKLNATVANMRFIKPLDVELVKQLAASH 540 Query: 541 YALVTVEEGCIMGGAGAAVSEALAAAGINKPILHLGLPDRFIDHGDAAQLLAQCGLDANG 600 ALVTVEEGCIMGGAGAAVSEALAAAGINKPILHLGLPDRFIDHGDAAQLLAQCGLDANG Sbjct: 541 DALVTVEEGCIMGGAGAAVSEALAAAGINKPILHLGLPDRFIDHGDAAQLLAQCGLDANG 600 Query: 601 IADSIAQRFGKDQPKLVVNNG 621 IADSIAQRFGKDQPKLVVNNG Sbjct: 601 IADSIAQRFGKDQPKLVVNNG 621 >gi|300310438|ref|YP_003774530.1| transketolase, C-terminal subunit [Herbaspirillum seropedicae SmR1] Length = 334 Score = 127 bits (319), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 93/312 (29%), Positives = 148/312 (47%), Gaps = 9/312 (2%) Query: 304 SAGGKLTYTKVFGDWLCDMAAADDKLVGITPAMREGSGMVDFEKKFPNRYYDVGIAEQHA 363 +A G+ FG L D AA ++VG+T + + + + F+K +P R++ +G+AEQ Sbjct: 21 AAEGQRVQAAPFGKALVDYAADRPEIVGLTADLAKYTDLHLFQKAYPERFFQMGMAEQLL 80 Query: 364 VTFAAGMACEGMKPVVAIYSTF-LQRAYDQLIHDVALQNLDVTFALDRAGLVGADGATHA 422 + A GMA EG+ P Y+ F +RAYD + +A +NL+V GL G +H Sbjct: 81 MAAAGGMAKEGLVPFATTYAVFATRRAYDFIHQVIAEENLNVKICCALPGLTTGYGPSHQ 140 Query: 423 GNYDLAFLRCIPNMVVMAASDENECRKMLSTAYQYPGPASVRYPRGAGIGAAVDQTLETL 482 DLA +R IP M ++ D + + + + GP +R RG + +D+ Sbjct: 141 ATEDLAMMRAIPGMTIVDPCDALDLEQAVPQIAAHQGPVYMRLARG-NVPLVLDEYDYRF 199 Query: 483 PLGRGEIRRQGKDVAILNFGSLLAPALGA-----ADKLNATVANMRFIKPLD-VELVKQL 536 LGR + R G DV I++ G + AL ADK++ V + IKP D +V Q+ Sbjct: 200 ELGRAKEIRDGNDVLIISSGFMTMRALEVAKALEADKVSVAVLHCPTIKPFDEATVVAQV 259 Query: 537 AASHYALVTVEEGCIMGGAGAAVSEALAAAGINKPILHL-GLPDRFIDHGDAAQLLAQCG 595 + +V E ++GG G V+ L + L GLPD F+D G L + G Sbjct: 260 KKKNRLVVVAENHSVVGGLGEIVATTLMRHRVQPAGFQLAGLPDAFLDAGALPTLHDRYG 319 Query: 596 LDANGIADSIAQ 607 + + I + Sbjct: 320 ISCEVLGRRIKE 331 >gi|300309646|ref|YP_003773738.1| transketolase C-terminal subunit [Herbaspirillum seropedicae SmR1] Length = 321 Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 142/306 (46%), Gaps = 31/306 (10%) Query: 323 AAADDKLVGITPAMREGSGMVD-FEKKFPNRYYDVGIAEQHAVTFAAGMACEGMKPVVAI 381 A A+D+ + T A GS ++D FP+R+ +VGIAEQ+ + +AG+A EG K Sbjct: 19 AMAEDRQIFFTCA-DFGSPVLDKIRADFPDRFVNVGIAEQNLINVSAGLALEGYKVFAYA 77 Query: 382 YSTFL-QRAYDQLIHDVALQNLDVTFALDRAGLVGA------DGATHAGNYDLAFLRCIP 434 + F+ R Y+Q+ +AL + ++ G VGA G TH D+ +R +P Sbjct: 78 IAPFITMRCYEQVRVSLALLSEVRPMNVNLIG-VGAGYSYVVSGPTHQCYEDITLMRALP 136 Query: 435 NMVVMAASDENECRKMLSTAYQYPGPASVRY-----PRGAGIGAAVDQTLETLPLGRG-E 488 N V++A+D T GP +R+ P G GA L +G Sbjct: 137 NFQVLSAADHVTAAAFFDTCSNSMGPKYLRFDAQVLPVIYGDGAP--------DLAQGFH 188 Query: 489 IRRQGKDVAILNFGSLLAPALGAADKLNATVANMRFIKPLDV-----ELVKQLAASHYAL 543 I R+G + ++ G +L AL AA+ L A + I D+ + +++ S+ + Sbjct: 189 IHRRGGKIGLVATGYMLHTALQAAEVLAAEGIEVGVIDLFDLARFSADALQETLQSYAGI 248 Query: 544 VTVEEGCI-MGGAGAAVSEALAAAGINKPILHLGLPDRF-IDHGDAAQLLAQCGLDANGI 601 T+EEG GG + + E +A G+ +L++G+ + + G +L + G+ + Sbjct: 249 ATLEEGFRGRGGMDSMLFEFIARRGLQTRMLNIGVDGVYRFELGTRTELHEEVGIGPQAV 308 Query: 602 ADSIAQ 607 SI + Sbjct: 309 LTSIRE 314 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,030,768 Number of extensions: 90645 Number of successful extensions: 275 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 271 Number of HSP's successfully gapped: 3 Length of query: 621 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 530 Effective length of database: 1,188,985 Effective search space: 630162050 Effective search space used: 630162050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)