BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0013.p
         (379 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309437|ref|YP_003773529.1| homoserine O-acetyltransferase ...   790   0.0  
gi|300310402|ref|YP_003774494.1| homoserine acetyltransferase [H...    63   3e-11

>gi|300309437|ref|YP_003773529.1| homoserine O-acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 379

 Score =  790 bits (2040), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/379 (100%), Positives = 379/379 (100%)

Query: 1   MSIGIVSPQVMHFAEPLPLQGGSALADYSLTYETYGTLNADKSNAVLVCHALNASHHVAG 60
           MSIGIVSPQVMHFAEPLPLQGGSALADYSLTYETYGTLNADKSNAVLVCHALNASHHVAG
Sbjct: 1   MSIGIVSPQVMHFAEPLPLQGGSALADYSLTYETYGTLNADKSNAVLVCHALNASHHVAG 60

Query: 61  VYADDPDNVGWWDNMVGPGKSLDTDRFFVIGVNNLGSCFGSTGPMHANPATGKPYGADFP 120
           VYADDPDNVGWWDNMVGPGKSLDTDRFFVIGVNNLGSCFGSTGPMHANPATGKPYGADFP
Sbjct: 61  VYADDPDNVGWWDNMVGPGKSLDTDRFFVIGVNNLGSCFGSTGPMHANPATGKPYGADFP 120

Query: 121 VVTVEDWVNAQARLADRLGITCFAAVMGGSLGGMQALAWSMMYPDRLRHCLVIASTPKLS 180
           VVTVEDWVNAQARLADRLGITCFAAVMGGSLGGMQALAWSMMYPDRLRHCLVIASTPKLS
Sbjct: 121 VVTVEDWVNAQARLADRLGITCFAAVMGGSLGGMQALAWSMMYPDRLRHCLVIASTPKLS 180

Query: 181 AQNIAFNDVARQAILTDPQYHGGDFYAHGVVPKNGLRVARMVGHITYLSDDDMAEKFGRD 240
           AQNIAFNDVARQAILTDPQYHGGDFYAHGVVPKNGLRVARMVGHITYLSDDDMAEKFGRD
Sbjct: 181 AQNIAFNDVARQAILTDPQYHGGDFYAHGVVPKNGLRVARMVGHITYLSDDDMAEKFGRD 240

Query: 241 LRSGQYQFGYGVDFEIESYLRYQGDKFSTYFDANTYLLITKALDYFDPAREFGGDLAKAL 300
           LRSGQYQFGYGVDFEIESYLRYQGDKFSTYFDANTYLLITKALDYFDPAREFGGDLAKAL
Sbjct: 241 LRSGQYQFGYGVDFEIESYLRYQGDKFSTYFDANTYLLITKALDYFDPAREFGGDLAKAL 300

Query: 301 ACTKAKFLLVSFTTDWRFSPERSREMVQALVANKRRVSYAEIDAPHGHDAFLLDDARYMK 360
           ACTKAKFLLVSFTTDWRFSPERSREMVQALVANKRRVSYAEIDAPHGHDAFLLDDARYMK
Sbjct: 301 ACTKAKFLLVSFTTDWRFSPERSREMVQALVANKRRVSYAEIDAPHGHDAFLLDDARYMK 360

Query: 361 VVREYYGSIWTELQQEGRA 379
           VVREYYGSIWTELQQEGRA
Sbjct: 361 VVREYYGSIWTELQQEGRA 379


>gi|300310402|ref|YP_003774494.1| homoserine acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 359

 Score = 63.2 bits (152), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 88/187 (47%), Gaps = 22/187 (11%)

Query: 22  GSALADYSLTYETYGTLNADKSN-AVLVCHALNASHHVAGVYADDPDNVGWWDNMVGPGK 80
           G  L +  L Y T G    D++N AVLV H    S     + + D     +   + GPG+
Sbjct: 50  GQTLENLRLHYVTLG----DRANPAVLVLHGTYQSAQA--MLSKD-----FGGQLFGPGQ 98

Query: 81  SLDTDRFFVIGVNNLGSCFGSTGPMHANPATGKPYGADFPVVTVEDWVNAQAR-LADRLG 139
            LD  ++F+I  + +G    S       P+ G    A FP     D V AQ R L + +G
Sbjct: 99  PLDASKYFIIIPDGIGVGKSS------KPSDG--LRAAFPQYNYADMVLAQYRMLTEGMG 150

Query: 140 ITCFAAVMGGSLGGMQALAWSMMYPDRLRHCLVIASTP-KLSAQNIAFNDVARQAILTDP 198
           IT    ++G S+GGMQ   W   YP      + +AS P +++++N     +  ++I  DP
Sbjct: 151 ITHLRLIIGNSMGGMQTWIWGGTYPGFADGLVPMASQPTEMASRNWMMRRMLVESIKQDP 210

Query: 199 QYHGGDF 205
            ++ G++
Sbjct: 211 AWNNGNY 217


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,338,539
Number of extensions: 59715
Number of successful extensions: 139
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 2
Length of query: 379
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 292
Effective length of database: 1,207,925
Effective search space: 352714100
Effective search space used: 352714100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)