BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0001.p
         (585 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312883|ref|YP_003776975.1| hypothetical protein Hsero_3589...   176   4e-45

>gi|300312883|ref|YP_003776975.1| hypothetical protein Hsero_3589
           [Herbaspirillum seropedicae SmR1]
          Length = 201

 Score =  176 bits (447), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 94/116 (81%), Positives = 106/116 (91%)

Query: 83  GPTRRWYIRDRISIREIARRLDISRNTVRRYIRSDVSEPAYPARRSPSSLDDFTAKLSAW 142
           G  RRWYIRDRISIREIARRLDISRNTVRR IR++  EP+YP+R+S SSLD+F  +L+AW
Sbjct: 8   GIIRRWYIRDRISIREIARRLDISRNTVRRSIRTEAIEPSYPSRKSSSSLDEFAPQLTAW 67

Query: 143 LSADAVKSRKQRRTLKQMFLDLRELGYEGSYDRVAAFSRQWKVGQMERVKSASKST 198
           LSA+AVKSRKQRRTLKQMFLDL+ELGY+GSYDRVAAF R+WKVGQMERV SASKST
Sbjct: 68  LSAEAVKSRKQRRTLKQMFLDLKELGYKGSYDRVAAFGRRWKVGQMERVNSASKST 123


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,881,945
Number of extensions: 77719
Number of successful extensions: 207
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 495
Effective length of database: 1,193,720
Effective search space: 590891400
Effective search space used: 590891400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)