BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0003.p (169 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313525|ref|YP_003777617.1| AraC family transcription regul... 134 3e-33 gi|300311011|ref|YP_003775103.1| AraC family transcription regul... 108 3e-25 gi|300310311|ref|YP_003774403.1| AraC family transcription regul... 96 1e-21 gi|300310273|ref|YP_003774365.1| AraC family transcription regul... 96 2e-21 >gi|300313525|ref|YP_003777617.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 298 Score = 134 bits (338), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 68/153 (44%), Positives = 95/153 (62%), Gaps = 2/153 (1%) Query: 1 LRELLLKAAGFPESYSLGGWEERLIDVLLDELVAAPVE--DLHLPMPRNLRLRRLAEMML 58 L +++ A + Y+ RL VL++EL + LHLP P++ RLR +A + Sbjct: 112 LVQMICHLAEQRQDYAPHERTARLAAVLVEELEHSQRHALPLHLPAPQHSRLRAIARHLA 171 Query: 59 ADPTDKASKGDWAVRIGMSERTMSRLLLQEIGMSFGRWRRQLHIILALQRLTKGETVQRV 118 P D+ + W R MSER+ +R + E GMSFGRWRRQ+H++LALQRL G +VQRV Sbjct: 172 EHPADRRTVAQWGQRHAMSERSFARFVQAETGMSFGRWRRQIHLMLALQRLASGSSVQRV 231 Query: 119 ALELGYENASGFITMFRKATGKSPARYLSDRTG 151 + +LGY++ S FITMFRK GK PARY++ R Sbjct: 232 SQDLGYDSVSAFITMFRKTLGKPPARYMAQRQA 264 >gi|300311011|ref|YP_003775103.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 273 Score = 108 bits (269), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 58/140 (41%), Positives = 81/140 (57%) Query: 1 LRELLLKAAGFPESYSLGGWEERLIDVLLDELVAAPVEDLHLPMPRNLRLRRLAEMMLAD 60 LRELL++A Y L EE LI +LLDE+ A H+P+P RL L LA Sbjct: 118 LRELLIEATRMDPHYVLHSREENLIRLLLDEIGRAEEIPAHVPLPPEPRLGELCHRFLAA 177 Query: 61 PTDKASKGDWAVRIGMSERTMSRLLLQEIGMSFGRWRRQLHIILALQRLTKGETVQRVAL 120 P+ ++ WA+++ +SERT SR L + GM F +WR + ++ A+ RL G+ V +A Sbjct: 178 PSIRSGPAQWALQLHISERTFSRRFLAQTGMGFQQWRLRACVMYAISRLALGQPVTTIAY 237 Query: 121 ELGYENASGFITMFRKATGK 140 +LGYE + F TMFRK TG Sbjct: 238 DLGYERPAAFSTMFRKMTGH 257 >gi|300310311|ref|YP_003774403.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 96.3 bits (238), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 82/149 (55%), Gaps = 2/149 (1%) Query: 12 PESYSLGGWEERLIDVLLDELVAAPVEDLHLPMPRNLRLRRLAEMMLADPTDKASKGDWA 71 P Y+ + +++L EL AP + +P P + RL+ + E +LADP + S DWA Sbjct: 127 PRDYAPQSRAGHVAELILSELARAPAIPVAIPWPGDRRLQAICEAILADPGRQFSLADWA 186 Query: 72 VRIGMSERTMSRLLLQEIGMSFGRWRRQLHIILALQRLTKGETVQRVALELGYENASGFI 131 G S RT+ RL +E G+ F W +Q+H+ AL RL++G+ V VA LGY + S F Sbjct: 187 GMGGASVRTVIRLFPKETGLQFRHWVQQVHLSEALVRLSRGDPVGVVAQALGYRSQSAFS 246 Query: 132 TMFRKATGKSPARYLSDRTGGTERTSVPA 160 MFRKA +P YL + R S+PA Sbjct: 247 NMFRKALRTTPNHYLQRQE--RRRLSLPA 273 >gi|300310273|ref|YP_003774365.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 271 Score = 95.5 bits (236), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 54/153 (35%), Positives = 86/153 (56%), Gaps = 5/153 (3%) Query: 1 LRELLLKAAGFPESYSLGGWEERLIDVL-LDELVAAPVEDLHLPMP---RNLRLRRLAEM 56 LREL++ A E ++ RL+ L ++E++ P HLP P + + RL + Sbjct: 117 LRELIITLAQAREE-NMSAKRMRLLGALVMEEVLTQPTLPFHLPWPMSETDGPMARLCQA 175 Query: 57 MLADPTDKASKGDWAVRIGMSERTMSRLLLQEIGMSFGRWRRQLHIILALQRLTKGETVQ 116 +L DP D A+ +WA R+ M ++T R LQ GM+FG+WR+QL ++ +L L +G + Sbjct: 176 LLDDPGDMATAAEWADRLAMGQKTFHRRFLQSTGMTFGKWRQQLRLMSSLPLLMQGMPIT 235 Query: 117 RVALELGYENASGFITMFRKATGKSPARYLSDR 149 +VAL GY++ S + T F K GK P+ + R Sbjct: 236 QVALASGYDSHSAYTTAFGKQFGKPPSAFFPAR 268 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 502,733 Number of extensions: 16828 Number of successful extensions: 87 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 91 Number of HSP's successfully gapped: 4 Length of query: 169 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 90 Effective length of database: 1,245,805 Effective search space: 112122450 Effective search space used: 112122450 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)