BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0002.p (791 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311660|ref|YP_003775752.1| TonB-dependent receptor protein... 115 9e-27 gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore... 114 3e-26 gi|300310762|ref|YP_003774854.1| outer membrane ferric sideropho... 105 2e-23 gi|300311652|ref|YP_003775744.1| TonB-dependent siderophore rece... 103 8e-23 gi|300312551|ref|YP_003776643.1| ferrisiderophore receptor prote... 97 3e-21 >gi|300311660|ref|YP_003775752.1| TonB-dependent receptor protein [Herbaspirillum seropedicae SmR1] Length = 705 Score = 115 bits (289), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 163/631 (25%), Positives = 250/631 (39%), Gaps = 79/631 (12%) Query: 79 LPTVTVTSRTDTATTEGTGSYTTGATAAATRLPLSLQETPQSVTVITRQRMDDQQLNSVQ 138 LP V + + +TA G Y TA+AT+ + E PQSV+V+TR MD + + S+ Sbjct: 31 LPQVEIKADAETANGPVNG-YVAKRTASATKTDTPVLEVPQSVSVVTRDEMDARGVTSLL 89 Query: 139 SVLDNTTGITS--YQSDSERTSFYS-RGFLINNVQ---YDGIPTVLGSTVNGSGISTIDT 192 VL G S + D +++ RGF+ V +G+ + G G G +T Sbjct: 90 DVLRYMPGANSETHGVDPRGYEYFNLRGFINAQVTSNFLNGLRQIPG----GFGQFRTET 145 Query: 193 SFYDRVEVVRGGSGLLTGTGNPSAAINLVRKRPTQDFSAAASLSVGSWDTRRGTADISTP 252 +R+EV+RG + G +P IN V K P D + +GS++ ++ AD++ Sbjct: 146 YGMERIEVLRGPGSVTFGQADPGGVINRVSKLPGMDIPNELGVDIGSFNRKQVVADLNGH 205 Query: 253 LTADGGIRARVVATDQEG---HSYINGYKPEKKSFYGIIEAELTSR----TTVSLGYDYQ 305 T DG RVV + + + NG + FY + LT R T+++L DY Sbjct: 206 -TQDGEYLWRVVGLGLDSNNQYKFNNGQSGDNNRFY--LAPSLTWRPSASTSLTLMADYM 262 Query: 306 DLTSTGPTWGGL-PLWFSNGTQVSYSPSQSYAQD-WSHWNNTIKTAFAEIDHRFDNGWKL 363 + S W + P T + + D WS + +H+FDN W Sbjct: 263 NDRSGSSRWTAVRPGNVLTHTLIGDPNFDRQSNDQWSFG--------YQFEHKFDNAWTF 314 Query: 364 RAIANQYRTEYNAELLGLVGRPDATTGLGFFPTGAYPVALASNARSRQNTFDVMASGPFE 423 R Q A L + + T G T V N++ D G + Sbjct: 315 RQNFRQ------ANLKSVYAALNPGTLTGSVLTRGTTVY---NSQVDNTLVDNQLEGRLK 365 Query: 424 LLGRQHELVVGATTSR---RTSDQNAIAPFYAGFSPVNIYDLSTPFARPDFAAMNWARTN 480 +H ++ G SR R AP +PV Y ++ P A F + Sbjct: 366 WGATEHTVLFGLDWSRMYDREVRYRGAAPSLNIDNPV--YGVTIPAATTLFGNL-----E 418 Query: 481 TEIKQSGVYGAARFSLAQPLKLIVGGRLSNYEIDDSVSGSAMHY-------KKNSVFTPY 533 + Q+G+Y + Q L L +GGR D V +Y +S + Sbjct: 419 ENMNQTGLYAQDQIKFDQRLTLTLGGRW------DKVKDETRNYFNRTTTRSDDSALSGR 472 Query: 534 AGLVYDINNIYSTYVSYTRIFNPQTDYQDSKGNVLTPATGKTTEVGVKGAYMGGRLNAAV 593 GL Y + + YVSY F PQT D G P + EVG+K G+ Sbjct: 473 IGLSYLVTRDIAPYVSYATSFLPQTG-SDFNGKPFDPTKARQAEVGIKYQPADGKTLFTA 531 Query: 594 AVFETKLDNAAQIVAGAFTPGGAQAYTGV--DGTKSRGIEVDLQGELTRGWNIYAGLSHF 651 A+FE N TP A V KSRG+E++ +GE+ +G N+ A ++ Sbjct: 532 ALFELTKTNVQ-------TPDPAHTNFNVLSGEIKSRGLELEAKGEIVKGLNLSASYTYT 584 Query: 652 ---TAQDGNGVRLNSQ---IPRTTAQLFTTY 676 Q+ L Q +PR A ++ Y Sbjct: 585 DVKNTQNNTASLLGKQPILVPRQAASVWADY 615 >gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 704 Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 152/634 (23%), Positives = 249/634 (39%), Gaps = 79/634 (12%) Query: 42 LSSAVTAAVFMSAQAVFAADSSQTQTRSDAASQEQASLPTVTVTSRTDTATTEGTGSYTT 101 L AV A +S A+ A A Q+ +LP + V+ Y Sbjct: 8 LRLAVLATCSLSPLAILPA----------CAQQDTTALPAIEVSG------ARANDGYVA 51 Query: 102 GATAAATRLPLSLQETPQSVTVITRQRMDDQQLNSVQSVLDNTTGITSYQSDSERTSFYS 161 + T+ L++ PQ++ V+ Q + DQ +S+Q VL N G+ D +R + Sbjct: 52 PTAVSGTKSEAPLRDVPQTINVVPAQVIRDQNASSLQDVLKNVPGLGLSTGDGQRDQVFI 111 Query: 162 RGFLINNVQY-DGIPTVLGSTVNGSGISTIDTSFYDRVEVVRGGSGLLTGTGNPSAAINL 220 RGF Q+ DG + D S + VEV++G + +L G G+ IN Sbjct: 112 RGFTAIGDQFVDGF--------RDDALYFRDLSNVESVEVIKGPAAVLYGRGSSGGLINR 163 Query: 221 VRKRPTQDFSAAASLSVGSWDTRRGTADISTPLTADGGIRARVVATDQEGHSYINGYKPE 280 V K+P D S S + S RR D+ +G + R+ + G S+ + Sbjct: 164 VTKKPGVDVS-DVSFTANSTAGRRAELDLGR--AGEGALSWRLTGAVERGDSFRAQQFID 220 Query: 281 KKSFYGIIEAELTSRTTVSLGYDYQDLTSTGPTWGGLPLWFSNGTQVSYSPSQSY----A 336 + + + ++ T + L DY L G+P + G V P +Y A Sbjct: 221 RTAIAPSVALRFSADTKLLLQMDY--LEDRRMMDFGIPSY--RGRPVDVDPGTTYGARNA 276 Query: 337 QDWSHWNNTIKTAFAEIDHRFDNGWKLRAIANQYRTEYNAELL--GLVGRPDATTGLGFF 394 +D + + + A HRF++ + R Y N G V ATT L Sbjct: 277 RDADFVQSRVASTTATFTHRFNDEFSFRNGLRYYDYHLNRNNTNGGTVNEATATTTLNH- 335 Query: 395 PTGAYPVALASNARSRQNTFD-VMASGPFELLGRQHELVVGATTSRRTSDQNAIAPFYAG 453 A R F+ + +L +HE++ G ++ D + A Sbjct: 336 ---------AKLVRDENGWFNQSELTQKLQLGSIRHEILYGLELGSQSKDASQ-ASGVVN 385 Query: 454 FSPVNIYDLSTPFARPDFAAMNWARTNTEIKQSGVYGA------ARFSLAQPLKLIVGGR 507 F V+I++ P P+ R N G Y SL++ K +VG R Sbjct: 386 FPGVSIFNPVLPVVDPN-------RLNPPTLTYGTYDTFATYLQDSLSLSEQWKALVGLR 438 Query: 508 LSNY----EIDDSVSGSAMHYKK-NSVFTPYAGLVYDINNIYSTYVSYTRIFNPQTD-YQ 561 Y I + +GS ++ ++ +P AGLV+ + S Y+S++R F P + + Sbjct: 439 YDRYRQQSRILNLANGSTADLQRTDTAVSPRAGLVWQPSLTQSYYLSWSRSFQPSGESFA 498 Query: 562 DSKGNV-LTPATGKTTEVGVKGAYMGGRLNAAVAVFETKLDN-AAQIVAGAFTPGGAQAY 619 + N L P + TE G K + GR +A V+VF + DN + + G P G Q Sbjct: 499 LATNNADLAPEQTRNTEAGAKYDFWEGRASATVSVFRLERDNIKSALPNGVVIPVGKQ-- 556 Query: 620 TGVDGTKSRGIEVDLQGELTRGWNIYAGLSHFTA 653 ++ G E+ +L +GW + AG + A Sbjct: 557 ------RTDGAELSFSADLKQGWKLLAGYAWLNA 584 >gi|300310762|ref|YP_003774854.1| outer membrane ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 717 Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 144/569 (25%), Positives = 252/569 (44%), Gaps = 68/569 (11%) Query: 107 ATRLPLSLQETPQSVTVITRQRMDDQQLNSVQSVLDNTTGITSYQSDSERTSFYSRGFL- 165 ATR E PQS+ ++ +++ ++ L GI+S SD+ +F RGF Sbjct: 70 ATRSAADPMEVPQSIQSVSVEQVSVYGARTLAGALLGVPGISSI-SDTRFDAFRIRGFSS 128 Query: 166 INNVQYDGI---PTVLGSTVNGSGISTIDTSFYDRVEVVRGGSGLLTGTGNPSAAINLVR 222 N++ DG+ P + G+ I+ RVEV+RG + +L G G+ IN + Sbjct: 129 ANDLLLDGMRDDPQYV------RGLGNIE-----RVEVLRGPASVLYGRGSGGGVINRIS 177 Query: 223 KRPTQDFSAAASLSVGSWDTRRGTADISTPLTADGGIRARVVATDQEGHSYINGYKPEKK 282 K+P QD ++ A+LS+GS D + PL + R+ + S+ + ++ Sbjct: 178 KQPGQDVASQATLSLGSAGLLGAALDWNRPLAPHWAL--RINTGREHAGSFRDTVNGTRQ 235 Query: 283 SFYGIIEAELTSRTTVSLGYDYQDLTSTGPTWG--GLPLWFSNGTQVSYS-PSQSYAQDW 339 F ++ E + R + L +Y + P G G + +NG +Y+ PS + Q Sbjct: 236 YFAPALKWE-SGRDSWLLQAEYDEYERV-PDRGIPGRAIATANGEPTAYALPSAGHEQ-- 291 Query: 340 SHWNNTIKTAFAEIDHRFDNGWKLRAIANQYRTEYNAELLGLVGRPDATTGLGFFPTGAY 399 + + +I H RA++ + + L+ L D T F T AY Sbjct: 292 -FFGAAGRDVIRDI-HMSLRSTLTRALSQDWTLRHALALMDLNSNFDNT-----FVTQAY 344 Query: 400 ---PVALASNARSR--QNTFDVMASGPFELLGR--QHELVVGATTS---RRTSDQNAIAP 449 P+ L R+R QN ELLG+ H+L++G S R + AP Sbjct: 345 QSAPLDLDRVQRTRYQQNLQQRSVQNNLELLGQLGAHDLLLGVEHSWQKREPRLWSVAAP 404 Query: 450 FYAGFSPVNIY---DLSTPFARPDFAAMNWARTNTEIKQSGVYGAARFSLAQPLKLIVGG 506 + +P N D +TPF MN+ + + G+Y + +LA K++ G Sbjct: 405 AVSAVTPENTRNGDDPTTPF------QMNYHKASN----LGLYVQDKITLAAHWKMLAGL 454 Query: 507 RLSNYEIDDSVSGSAMHYKKNS-VFTPYAGLVYDINNIYSTYVSYTRIFNPQTD-----Y 560 R +E+D + + ++ + +P G+V++ Y+S+++ F P Sbjct: 455 RWDRFEVDSRNRRNGVRSERTAHALSPRIGVVWEALPGQHAYLSWSKNFAPVGGDVIGIT 514 Query: 561 QDSKGNV--LTPATGKTTEVGVKGAYMGGRLNAAVAVFETKLDNAAQIVAGAFTPGGAQA 618 D++GN L P + E G+K ++ RL+ +A F+ +L N + VA PG + Sbjct: 515 PDARGNFNDLKPQFSRQVEAGIKSEWLDRRLSTTLAWFQLELFN--RNVADPVRPGFFEQ 572 Query: 619 YTGVDGTKSRGIEVDLQGELTRGWNIYAG 647 +G++ ++RGIE+ ++GEL W + AG Sbjct: 573 -SGLE--RNRGIELSVEGELAAPWFVRAG 598 >gi|300311652|ref|YP_003775744.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 832 Score = 103 bits (256), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 154/644 (23%), Positives = 263/644 (40%), Gaps = 64/644 (9%) Query: 79 LPTVTVTSRTDT-ATTEGTGSYTTGATAAATRLPLSLQETPQSVTVITRQRMDDQQLNSV 137 L +TV+ R D + Y +A AT+ L E QSV+V+TR M+ + NS+ Sbjct: 156 LGNITVSGRRDEPGAADPVEGYVALRSATATKTDTPLLELAQSVSVVTRAEMEARGANSI 215 Query: 138 QSVLDNTTGITS--YQSDSERTSFYS-RGFLINNVQYDGIPTVLGSTVNGSGISTIDTSF 194 VL G + + D +++ RGF IN L +G G+ +T Sbjct: 216 LDVLRYMPGANTETHGVDPRGYDYFNLRGF-INAQTTSNYLNGLRQIPSGFGMFRTETYG 274 Query: 195 YDRVEVVRGGSGLLTGTGNPSAAINLVRKRPTQDFSAAASLSVGSWDTRRGTADISTPLT 254 +RVEV+RG + G +P +N V K + VGS+ R+ AD+S L Sbjct: 275 LERVEVLRGANSASFGQADPGGVVNRVSKLAGSGARNELMVDVGSFQRRQVAADLSGDLD 334 Query: 255 ADGGIRARVVATDQEGHS---YINGYKPEKKSFYGI--IEAELTSRTTVSLGYDYQDLTS 309 +G ++AR+V +G + Y NG + Y ++ ++ T++ L +Y S Sbjct: 335 PEGRVQARLVGLLLDGDTQFRYANGRAGDNDRLYLAPSLKIRPSADTSLILLAEYLKDRS 394 Query: 310 TGPTWGGLPLWFSNGTQVSYSP--SQSYAQDWSH-WNNTIKTAFAEIDHRFDNGWKLRAI 366 W + S + P Q + WS W ++HR D W LR Sbjct: 395 GSGRWTAVRADGSQTHTLLGDPDFDQQRGEQWSLGW---------MLEHRLDATWTLRQH 445 Query: 367 ANQ--YRTEYNAELLGLVGRPDATTGLGFFPTGAYPVALASNARSRQNT-FDVMASGPFE 423 Q R++Y A G F + A +NT D A + Sbjct: 446 FRQAALRSQY------------AAVNPGSFNGSILSRSTAVYDTQVENTLLDNQALARVQ 493 Query: 424 LLGRQHELVVGATTSRRTSDQNAIAPFYAGFSPVNIYDLSTP-FARPDFAA-MNWARTNT 481 +H++++G S ++ + Y G +P D+ P + +P AA + + Sbjct: 494 WGQAEHQVLLGLDWSHMSAREQR----YRGVAPS--LDIDNPVYTQPIPAATTRFGDLDQ 547 Query: 482 EIKQSGVYGAARFSLAQPLKLIVGGRLS-NYEIDDSVSGSAMHYKKNSVFTPYAGLVYDI 540 + Q+G+Y + Q + L +G R + + + + +++ + + F+ GL Y + Sbjct: 548 TLVQTGLYAQDQIRY-QRIVLTLGARYDRSRDSTRNAANNSLQAAEENAFSGRVGLSYLV 606 Query: 541 NNIYSTYVSYTRIFNPQTDYQDSKGNVLTPATGKTTEVGVKGAYMGGRLNAAVAVFETKL 600 + + YVSY F PQ QD G AT + E GVK GR A+++ Sbjct: 607 SPELAPYVSYGSSFLPQAG-QDVDGKPFKAATARQIEAGVKYQPGHGRAVYTAALYQLVK 665 Query: 601 DNA--AQIVAGAFTPGGAQAYTGVDGTKSRGIEVDLQGELTRGWNIYAGLSHFTAQDGNG 658 DNA + + F+ Q +SRG+E++ +GEL G N+ A ++ + Sbjct: 666 DNALGSDPLHANFSVSNGQ-------VRSRGVELEAKGELLPGLNVTAAYTYAQVVNTQN 718 Query: 659 V------RLNSQIPRTTAQLFTTYQLP-GEWSKLTLGGGVKXPG 695 + +PR A L+ Y + G+ + + +G G + G Sbjct: 719 AAPELIGKTPILVPRQAASLWLDYTVQRGDLAGMGVGAGARYTG 762 >gi|300312551|ref|YP_003776643.1| ferrisiderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 755 Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 146/633 (23%), Positives = 253/633 (39%), Gaps = 74/633 (11%) Query: 114 LQETPQSVTVITRQRMDDQQLNSVQSVLDNTTGITSY-----QSDSERTSFYSRGFLINN 168 L +TPQ++ ++ R M Q S+ VL NT G+ ++ S S + Y RGF Sbjct: 70 LVDTPQTLQILRRPLMAQQAATSLSDVLRNTPGVGAFFLGENGSTSTGDTIYMRGF---- 125 Query: 169 VQYDGIPTVLGSTVNGSGISTIDTSFYDRVEVVRGGSGLLTGTGNPSAAINLVRKRPTQD 228 D + V G + D ++VEV++G +G G G+P+ +INLV K+P Sbjct: 126 ---DATGVIFVDNVRDLGAISRDVFNIEQVEVLKGQAGTDNGRGSPTGSINLVTKQPELV 182 Query: 229 FSAAASLSVGSWDTRRGTADISTPLTADGGIRARVVATDQEGHSYING---YKPEKKSFY 285 + S + GSW +R T D + L AD G+ R+ Q HS + G + F Sbjct: 183 DAVTVSATYGSWIQKRATLDWNRILDADRGLALRLNLMKQ--HSGVPGRHVVHNARDGFA 240 Query: 286 GIIEAELTSRTTVSLGYDY---QDLTSTGPTWGGLP---------LWFSNGTQVSYSPSQ 333 + L + T + Y + ++ G + GLP + SN +VS S Sbjct: 241 PSLAFGLNTPTRIFFNYLHIQQDNVPDGGVSTIGLPGYSTPDPNRPYISNAPKVSTSNFY 300 Query: 334 SYAQDWSHWNNTIKTAFAEIDHRFDNGWKLRAIANQYRTEYNAELLGLV--GRPDATTGL 391 + D++ N + T ++H F KL+ RT+ + L V G + + Sbjct: 301 GHVNDYNRVNTDMTT--LRVEHDFSPDLKLQNTTRYARTDQDYRLSSFVAIGVKTDRSSV 358 Query: 392 GFF---PTGAYPVALASNARSRQNTFDVMAS------GPFELLGRQHELVVGATTSRRTS 442 F P ++ N +R++ + + S F+ QH LV G +R Sbjct: 359 SLFTPSPEDRSTWEVSRNIITRRDQSNEILSNQTHLTASFQSGALQHTLVGGLELTRER- 417 Query: 443 DQNAIAPFYAGFSP-VNIYDLSTPFARPDFAAMNWARTNTEIKQSGVYGAARFSLAQPLK 501 Q+A++ P N+Y + F R + +Y + Sbjct: 418 -QHALSFTGPSRRPRANLYQPNPEFDDSGTLISVNGRNKGQTDTVSLYALDTLKFNERWS 476 Query: 502 LIVGGRLSNYE--IDDSV--SGSAMHYKKNSVFTPYAGLVYDINNIYSTYVSYTRI---- 553 L +G R Y DD+ +G +H K +F +V+ + S Y Y Sbjct: 477 LSLGLREDFYRTSFDDTKPNAGGPLH-KSGGLFNAKVAVVFKPTSYSSLYALYASAQQPP 535 Query: 554 ----FNPQTDYQDSKGNVLTPATGKTTEVGVKGAYMGGRLNAAVAVFETKLDNAAQIVAG 609 FN ++ P T E+G K + +L A A++ T+++N ++ + Sbjct: 536 GGANFNLSASRSNASHTDYAPQKTDTGEIGTKWELLDRKLIATAALYRTEVNNEVELDSL 595 Query: 610 AFTPGGAQAYTGVDGTKSRGIEVDLQGELTRGWNIYAGLSHFTAQDGNGVRLNSQ----- 664 T Y ++G+E+ + G+L+ ++ AG SH +Q G +++ Sbjct: 596 TNT------YFQTGKKITQGLELGVTGDLSPTVSLTAGYSHMQSQVSRGALVSATGENFL 649 Query: 665 --IPRTTAQLFTTYQLPGEWSKLTLGGGVKXPG 695 PR + + +++LP TLGGG++ G Sbjct: 650 AYAPRRSFTSWVSWRLP---QGFTLGGGLRYSG 679 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.131 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,476,742 Number of extensions: 110106 Number of successful extensions: 388 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 345 Number of HSP's successfully gapped: 21 Length of query: 791 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 698 Effective length of database: 1,179,515 Effective search space: 823301470 Effective search space used: 823301470 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)