BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0529.p (319 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314079|ref|YP_003778171.1| LysR family transcription regul... 652 0.0 gi|300310812|ref|YP_003774904.1| LysR family transcription regul... 150 2e-37 gi|300310675|ref|YP_003774767.1| LysR family transcription regul... 147 8e-37 gi|300310448|ref|YP_003774540.1| transcription regulator protein... 145 6e-36 gi|300313281|ref|YP_003777373.1| LysR family transcription regul... 144 9e-36 >gi|300314079|ref|YP_003778171.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/319 (100%), Positives = 319/319 (100%) Query: 1 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGV 60 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGV Sbjct: 1 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGV 60 Query: 61 KPTPRAEELWPTVRRALSELEAVIAPESFDISRAQNTFRMAMVDATAALWLPSLVRTIMR 120 KPTPRAEELWPTVRRALSELEAVIAPESFDISRAQNTFRMAMVDATAALWLPSLVRTIMR Sbjct: 61 KPTPRAEELWPTVRRALSELEAVIAPESFDISRAQNTFRMAMVDATAALWLPSLVRTIMR 120 Query: 121 DAPRIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQISHARLYTGQ 180 DAPRIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQISHARLYTGQ Sbjct: 121 DAPRIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQISHARLYTGQ 180 Query: 181 YVCVMHKSHPLAGQPLTLDSYCNADHLLVSLSGKPHAVIDDVLAGMNRERKILLTVNQFF 240 YVCVMHKSHPLAGQPLTLDSYCNADHLLVSLSGKPHAVIDDVLAGMNRERKILLTVNQFF Sbjct: 181 YVCVMHKSHPLAGQPLTLDSYCNADHLLVSLSGKPHAVIDDVLAGMNRERKILLTVNQFF 240 Query: 241 TAGRIVASSELITVLPRHLVAATGMAEALVVKELPFQTPEEHVDMLWHERDARNPAHKWL 300 TAGRIVASSELITVLPRHLVAATGMAEALVVKELPFQTPEEHVDMLWHERDARNPAHKWL Sbjct: 241 TAGRIVASSELITVLPRHLVAATGMAEALVVKELPFQTPEEHVDMLWHERDARNPAHKWL 300 Query: 301 RAHLSATTHDEFGRINMKR 319 RAHLSATTHDEFGRINMKR Sbjct: 301 RAHLSATTHDEFGRINMKR 319 >gi|300310812|ref|YP_003774904.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 311 Score = 150 bits (378), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 102/319 (31%), Positives = 161/319 (50%), Gaps = 16/319 (5%) Query: 1 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGV 60 M+ DLNLL+ F + ++LT AA L +TQPAVS+ALRRLR+ +D L +R+ + Sbjct: 4 MNIAAADLNLLKTFIVIWELRSLTAAAERLHLTQPAVSHALRRLREMFDDPLFVRSTSAM 63 Query: 61 KPTPRAEELWPTVRRALSEL-EAVIAPESFDISRAQNTFRMAMVDATAALWLPSLVRTIM 119 PT A L + RAL L EA+ FD + A TF + M D + + LP L+ + Sbjct: 64 VPTETAIRLHEPIARALDILQEALHTHAQFDPATATRTFHLVMSDMSCSHVLPLLMEELA 123 Query: 120 RDAPRIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQISHARLYTG 179 AP + I + + + A + GD+DLA G+ PG+ +SQ+ LY Sbjct: 124 HAAPHVSIEVQQMAMENLGAAMRNGDVDLAFGYLPGLPED-------CQSQLV---LY-D 172 Query: 180 QYVCVMHKSHPLAGQPLTLDSYCNADHLLVSLSGKPHAVIDDVLAGMNRERKILLTVNQF 239 Y+C++ + HPLA PLTL++ ++ + H + +DVL +R + L + F Sbjct: 173 DYICMLRREHPLAQGPLTLENLLQLRYVYTVTNTTGHQLAEDVLRNAGVKRDVALRMPHF 232 Query: 240 FTAGRIVASSELITVLPRHLVAATGMAEALVVKELPFQTPEEHVDMLWHERDARNPAHKW 299 A +IV ++L LPR + + A V+ +LP + P V + H R + + +W Sbjct: 233 TVAPQIVRITDLALFLPRSIAERNNLDHAFVLLDLPLEMPRIPVSIYTHTRFSGDTGIQW 292 Query: 300 LRAHL----SATTHDEFGR 314 LR+ L +HD+ R Sbjct: 293 LRSLLIEMFGRGSHDDCAR 311 >gi|300310675|ref|YP_003774767.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 309 Score = 147 bits (372), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 150/304 (49%), Gaps = 15/304 (4%) Query: 2 SFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGVK 61 +F +DLNLLRVF A+ E++LT A N L ++QPAVS AL RLR +D L IRT G++ Sbjct: 3 TFNNMDLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFDDPLFIRTKEGMQ 62 Query: 62 PTPRAEELWPTVRRALSELE-AVIAPESFDISRAQNTFRMAMVDATAALWLPSLVRTIMR 120 PTP A EL + RAL ++ A+ E FD +++ FR +M D ++LP L + Sbjct: 63 PTPAALELAKPINRALQAVQDALRYTERFDPAQSTRVFRASMTDVAEMMFLPDLCEILTA 122 Query: 121 DAPRIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQISHARLYTGQ 180 AP +++++ + L G +D A G P + K H L+ Sbjct: 123 QAPDVRLQVEQVPPAHLEEALRTGQLDFAFGNLPAL-----------KPVTCHELLFRET 171 Query: 181 YVCVMHKSHPLAGQP-LTLDSYCNADHLLVSLSGKPHAVIDDVLAGMNRERKILLTVNQF 239 YVC+M + L + L LD + H+LV + H +++ + +R+I L++ F Sbjct: 172 YVCLMRQRDGLPQRAQLELDEFLAMSHVLVESAESSHHQVENSFQKLGVQRRISLSIPHF 231 Query: 240 FTAGRIVASSELITVLPRHL--VAATGMAEALVVKELPFQTPEEHVDMLWHERDARNPAH 297 RI+ S+L+ +P + + + V +LP P V + WH+ + + Sbjct: 232 TVLPRILGKSDLVATVPARIARLFHSEHPGVFVSYQLPVNIPVVEVTLHWHQSFDHDAGN 291 Query: 298 KWLR 301 WLR Sbjct: 292 SWLR 295 >gi|300310448|ref|YP_003774540.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 145 bits (365), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 94/305 (30%), Positives = 148/305 (48%), Gaps = 17/305 (5%) Query: 6 LDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGVKPTPR 65 +DLNLL VF V E+ ++ A L ++QPAVSNAL RLR + D+L +RTA G++PTP Sbjct: 9 IDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFEDELFVRTAQGMQPTPF 68 Query: 66 AEELWPTVRRALSEL-EAVIAPESFDISRAQNTFRMAMVDATAALWLPSLVRTIMRDAPR 124 AE+L V AL ++ A+ E F + F +AM D ++P+L+ R AP Sbjct: 69 AEQLAEPVAAALQQVARALNLQEGFAPQTSARRFTIAMTDVGEVYFMPALIEACARCAPG 128 Query: 125 IKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQISHARLYTGQYVCV 184 + I + D ++ + G +DLA+G F ++ L RL+ +YV + Sbjct: 129 VSISTVRAGAIDLKSEMESGRVDLAIGAFDNLSEAL-----------YQRRLFRQEYVSM 177 Query: 185 MHKSH----PLAGQPLTLDSYCNADHLLVSLSGKPHAVIDDVLAGMNRERKILLTVNQFF 240 H P G+ ++L + A+HL+VS P+ I+ L + V F Sbjct: 178 FRIGHALDKPGRGE-VSLKEFLAAEHLMVSSQESPYDRINQNLEKAGILPSVRFRVPHFT 236 Query: 241 TAGRIVASSELITVLPRHLVAATGMAEALVVKELPFQTPEEHVDMLWHERDARNPAHKWL 300 IV+S+ L+ +PR L + L + P + P +M WH R ++ + WL Sbjct: 237 AVPYIVSSTALVVTVPRKLAESAAAPFGLRYIKPPLRLPSLQTNMFWHRRYNQDEGNVWL 296 Query: 301 RAHLS 305 R +S Sbjct: 297 RGFIS 301 >gi|300313281|ref|YP_003777373.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 323 Score = 144 bits (363), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 87/299 (29%), Positives = 147/299 (49%), Gaps = 11/299 (3%) Query: 5 TLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGVKPTP 64 DLNLL + AV E++++ AA L M+QPAVS AL +LR L D L ++T G++PTP Sbjct: 3 NFDLNLLPIALAVFEERSVSAAARKLDMSQPAVSVALNKLRSALGDPLFVKTGRGMQPTP 62 Query: 65 RAEELWPTVRRALSELEA-VIAPESFDISRAQNTFRMAMVDATAALWLPSLVRTIMRDAP 123 RA L R L + A V++ + F + F +A+ D + LP L+ I +AP Sbjct: 63 RAVSLIGPTREILQRVHAEVLSSDQFTPATTTKRFVLALSDIGELMLLPRLLERIRDEAP 122 Query: 124 RIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQISHARLYTGQYVC 183 + + + + A L G++DLA+G+FP + RL++ +VC Sbjct: 123 HASVVTVTMAPAELVAALESGEVDLAIGYFP----------DLRNRNFFQQRLFSQDFVC 172 Query: 184 VMHKSHPLAGQPLTLDSYCNADHLLVSLSGKPHAVIDDVLAGMNRERKILLTVNQFFTAG 243 ++ HPL Q ++L+ Y A H++V G+ + + L R+++L+ F Sbjct: 173 LLRAGHPLPAQKISLEHYQAAGHIVVKAEGRDQPMCERFLLRRKIRRRVVLSTAHFMAIP 232 Query: 244 RIVASSELITVLPRHLVAATGMAEALVVKELPFQTPEEHVDMLWHERDARNPAHKWLRA 302 +VA+S+L+ +PR + + E F+ P + WH + ++ + WLR Sbjct: 233 LLVATSDLVATVPRAFGEFVVRFAGIRLVEPGFEMPMLDLKQHWHRKYHKDAGNAWLRG 291 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 948,259 Number of extensions: 37692 Number of successful extensions: 253 Number of sequences better than 1.0e-08: 24 Number of HSP's gapped: 250 Number of HSP's successfully gapped: 24 Length of query: 319 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 234 Effective length of database: 1,217,395 Effective search space: 284870430 Effective search space used: 284870430 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 130 (54.7 bits)