BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0528.p
         (683 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314078|ref|YP_003778170.1| uncharacterized protein involve...   654   0.0  
gi|300311615|ref|YP_003775707.1| outer membrane biogenesis prote...   144   3e-35

>gi|300314078|ref|YP_003778170.1| uncharacterized protein involved
           in outer membrane biogenesis protein [Herbaspirillum
           seropedicae SmR1]
          Length = 682

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/349 (95%), Positives = 335/349 (95%), Gaps = 2/349 (0%)

Query: 1   MPRLTKIILWLCASLILLITAAVIFILSFDWNRAKPWINERVSASIGREFAIDGDLSLHW 60
           MPRLTKIILWLCASLILLITAAVIFILSFDWNRAKPWINERVSASIGREFAIDGDLSLHW
Sbjct: 1   MPRLTKIILWLCASLILLITAAVIFILSFDWNRAKPWINERVSASIGREFAIDGDLSLHW 60

Query: 61  QRAQTLPGAAPPGFWERWLPWPRLQAEQLRIGNPPAFSQAGQMATIGQVTFTLNPLPLLV 120
           QRAQTLPGAAPPGFWERWLPWPRLQAEQLRIGNPPAFSQAGQMATIGQVTFTLNPLPLLV
Sbjct: 61  QRAQTLPGAAPPGFWERWLPWPRLQAEQLRIGNPPAFSQAGQMATIGQVTFTLNPLPLLV 120

Query: 121 HDIALPSLDIRDPSVSLLRNAQAVNNWTFKSSSAGPSAWNLRLGRITLRQGKLSLDDAVD 180
           HDIALPSLDIRDPSVSLLRNAQAVNNWTFKSSSAGPSAWNLRLGRITLRQGKLSLDDAVD
Sbjct: 121 HDIALPSLDIRDPSVSLLRNAQAVNNWTFKSSSAGPSAWNLRLGRITLRQGKLSLDDAVD 180

Query: 181 KIKLKAEIDTLDPAVEKIYGLGWKLSGSFNGAPVSGQGKAGGVLSLQNAQQPYPLQAQVR 240
           KIKLKAEIDTLDPAVEKIYGLGWKLSGSFNGAPVSGQGKAGGVLSLQN QQPYPLQAQVR
Sbjct: 181 KIKLKAEIDTLDPAVEKIYGLGWKLSGSFNGAPVSGQGKAGGVLSLQNVQQPYPLQAQVR 240

Query: 241 VGKTAIGVHGTLTRPAALAALDLRLSVSGASMGNLYPLTGVLLPETPPFATEGRLIGKID 300
           VGKTAIGVHGTLTRPAALAALDLRLSVSGASMGNLYPLTGVLLPETPPFATEGRLIGKID
Sbjct: 241 VGKTAIGVHGTLTRPAALAALDLRLSVSGASMGNLYPLTGVLLPETPPFATEGRLIGKID 300

Query: 301 AGHSQWDYEDFRGKVGQSDINGSLRYATGAGRGAAAVDGLAHFRSAALR 349
           AGHSQWDYEDFRGKVGQSDINGSLRY TGAG   + + G     S  LR
Sbjct: 301 AGHSQWDYEDFRGKVGQSDINGSLRYTTGAGAARSQLTG--SLTSEVLR 347


>gi|300311615|ref|YP_003775707.1| outer membrane biogenesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 654

 Score =  144 bits (362), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 106/310 (34%), Positives = 147/310 (47%), Gaps = 17/310 (5%)

Query: 30  DWNRAKPWINERVSASIGREFAIDGDLSLHWQRAQTLPGAAPPGFWERWLPWPRLQAEQL 89
           DWN AKPW+  ++SA++GR+  +DG+L L W  AQ    A   G   R  P  RL+AE+L
Sbjct: 41  DWNSAKPWLGRQLSAALGRDIRVDGNLDLSWSLAQADDEA---GALARLAPQLRLRAERL 97

Query: 90  RIGNPPAFSQAGQMATIGQVTFTLNPLPLLVHDIALPSLDIRDPSVSLLRNAQAVNNWTF 149
            IGNP     +  +     +    +PLPLL     +  L +    + + R      NW F
Sbjct: 98  FIGNPDWAHSSDHLVRAAALDVRFSPLPLLHWHWHVTDLRVEGLDLVMERADDQRKNWRF 157

Query: 150 KSSSAGPSAWNLRLGRITL-------RQGKLSLDDAVDKIKLKAEIDTLDPAVEKIYGLG 202
             SS   S W+  + RI          +  L LD   D   L A       +   +  L 
Sbjct: 158 --SSQPRSRWSFDIHRIVFGHALIRYVELPLDLDLRFDARPLNATATNQKDSAALV--LQ 213

Query: 203 WKLSGSFNGAPVSGQGKAGGVLSLQNAQQPYPLQAQVRVGKTAIGVHGTLTRPAALAALD 262
             ++G +  A V+GQ K G +  L N    +PLQA+  +G     + G L  P  L+  D
Sbjct: 214 AAVTGRYGQAEVNGQIKGGALPDLLNEGSVFPLQAEGDIGGVQTQLSGNLINPHQLSRAD 273

Query: 263 LRLSVSGASMGNLYPLTGVLLPETPPFATEGRL-IGKIDAGHSQWD--YEDFRGKVGQSD 319
           LR+ ++G S+  LYP TGV LP T  F TEG L I ++D     WD  Y  F GKVG+SD
Sbjct: 274 LRIGLAGDSLDRLYPATGVPLPATRAFHTEGALTITRLDPQTKAWDWRYSGFSGKVGESD 333

Query: 320 INGSLRYATG 329
             G  +Y  G
Sbjct: 334 FAGDAQYVRG 343


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,328,921
Number of extensions: 109327
Number of successful extensions: 260
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 2
Length of query: 683
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 591
Effective length of database: 1,184,250
Effective search space: 699891750
Effective search space used: 699891750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 134 (56.2 bits)