BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0508.p (617 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPas... 1252 0.0 gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 259 3e-70 gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPas... 242 6e-65 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 230 3e-61 gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 229 4e-61 >gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 618 Score = 1252 bits (3239), Expect = 0.0, Method: Compositional matrix adjust. Identities = 615/618 (99%), Positives = 616/618 (99%), Gaps = 1/618 (0%) Query: 1 MFSWFEKLVQPYPEHHPLPPPRGFMRFIWFCTKGVRPYIAAMTLMTAIIGVFEALLFAAL 60 MFSWFEKLVQPYPEHHPLPPPRGFMRFIWFCTKGVRPYIAAMTLMTAIIGVFEALLFAAL Sbjct: 1 MFSWFEKLVQPYPEHHPLPPPRGFMRFIWFCTKGVRPYIAAMTLMTAIIGVFEALLFAAL 60 Query: 61 GRIVDWLAKIAPSQLWSQEGHTLTWLVLILAASPLLIALQTMYKHQTLAGNFPMLLRWNF 120 GRIVDWLAKIAPSQLWSQEGHTLTWLVLILAASPLLIALQTMYKHQTLAGNFPMLLRWNF Sbjct: 61 GRIVDWLAKIAPSQLWSQEGHTLTWLVLILAASPLLIALQTMYKHQTLAGNFPMLLRWNF 120 Query: 121 HRLMLSQSMSFYQNEFAGRVATKVMQTALAVRDFCMIVGDILVFITIYFATLIGVVGSFD 180 HRLMLSQSMSFYQNEFAGRVATKVMQTALAVRDFCMIVGDILVFITIYFATLIGVVGSFD Sbjct: 121 HRLMLSQSMSFYQNEFAGRVATKVMQTALAVRDFCMIVGDILVFITIYFATLIGVVGSFD 180 Query: 181 IWMLAPFFIWLAAFAVALRYFVPRLSAVARNQADARSLMTGRITDAYTNIATVKLFSHAG 240 IWMLAPFFIWLAAFAVALRYFVPRLSAVARNQADARSLMTGRITDAYTNIATVKLFSHAG Sbjct: 181 IWMLAPFFIWLAAFAVALRYFVPRLSAVARNQADARSLMTGRITDAYTNIATVKLFSHAG 240 Query: 241 READYARSAMREFLVTVNQQMRLVSGFEVVNHLLNMVLIIGATGVSLYLWTQGKVGVGAV 300 READYARSAMREFLVTVNQQMRLVSGFEVVNHLLNMVLIIGATGVSLYLWTQGKVGVGAV Sbjct: 241 READYARSAMREFLVTVNQQMRLVSGFEVVNHLLNMVLIIGATGVSLYLWTQGKVGVGAV 300 Query: 301 AASTAMALRLNGIAHWVMWEMSSLFEHVGTVQDGINTLARAHDVKDAPDAQPLKVSQGEL 360 AASTAMALRLNGIAHWVMWEMSSLFEHVGTVQDGINTLARAHDVKDAPDAQPLKVSQGEL Sbjct: 301 AASTAMALRLNGIAHWVMWEMSSLFEHVGTVQDGINTLARAHDVKDAPDAQPLKVSQGEL 360 Query: 361 RFEGVSFSY-GAAPRPVVDKLDLVIRPGEKIGLVGRSGAGKSTIVNLLLRFYDIEGGRIT 419 RFEGVSFSY GAAPRPVVDKLDLVIRPGEKIGLVGRSGAGKSTIVNLLLRFYDIEGGRIT Sbjct: 361 RFEGVSFSYGGAAPRPVVDKLDLVIRPGEKIGLVGRSGAGKSTIVNLLLRFYDIEGGRIT 420 Query: 420 IDGQDIAHVTQDSLRAQIGMVTQDTSLLHRSVRENITYGRPDASDAEMTHAAERAEAHDF 479 IDGQDIAHVTQDSLRAQIGMVTQDTSLLHRSVRENITYGRPDASDAEMTHAAERAEAHDF Sbjct: 421 IDGQDIAHVTQDSLRAQIGMVTQDTSLLHRSVRENITYGRPDASDAEMTHAAERAEAHDF 480 Query: 480 IGTLADAKGRTGYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEA 539 IGTLADAKGRTGYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEA Sbjct: 481 IGTLADAKGRTGYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEA 540 Query: 540 AIQTSLYKLMEGKTVVAIAHRLSTIAAMDRLIVLDQGRIVEQGTHAELLAANGLYARLWS 599 AIQTSLYKLMEGKTVVAIAHRLSTIAAMDRLIVLDQGRIVEQG+HAELLAANGLYARLWS Sbjct: 541 AIQTSLYKLMEGKTVVAIAHRLSTIAAMDRLIVLDQGRIVEQGSHAELLAANGLYARLWS 600 Query: 600 HQSGGFLGEEEEDAAVTA 617 HQSGGFLGEEEEDAAV A Sbjct: 601 HQSGGFLGEEEEDAAVMA 618 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 259 bits (663), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 160/401 (39%), Positives = 227/401 (56%), Gaps = 22/401 (5%) Query: 211 NQADARSLMTGRITDAYTNIATVKLFSHAGREAD-YARSAMREFLVTVNQQMRLVSGFEV 269 N+ D+ + R D+ N TVK F + EA Y R V Q S + Sbjct: 215 NELDSHA--NTRAIDSLLNYETVKYFGNEEFEARRYDEGLQRYERAAVKSQ----SSLSL 268 Query: 270 VNHLLNMVLIIGATGVSLYLW------TQGKVGVGAVAASTAMALRLNGIAHWVMWEMSS 323 +N + ++ A V+L LW G + +G + A ++L +++ Sbjct: 269 LNTGQSAII---AIAVTLILWRATVGVIDGSMTLGDMVLVNAFMIQLYIPLNFLGVLYRE 325 Query: 324 LFEHVGTVQDGINTLARAHDVKDAPDAQPLKVSQGELRFEGVSFSYGAAPRPVVDKLDLV 383 + + + ++ + L +V D+ DA+PLK L F+ V FSY R ++ +D Sbjct: 326 IKQSLADMERLFSLLEEHREVADSADAKPLKTQGANLHFDHVDFSY-ERNRQILFDVDFT 384 Query: 384 IRPGEKIGLVGRSGAGKSTIVNLLLRFYDIEGGRITIDGQDIAHVTQDSLRAQIGMVTQD 443 ++ G +VG SG+GKST+ LL RFYD++ G I IDGQD+ VTQ SLR IG+V QD Sbjct: 385 VQAGTTTAVVGHSGSGKSTLSRLLYRFYDVDAGAIRIDGQDLRTVTQASLRQAIGIVPQD 444 Query: 444 TSLLHRSVRENITYGRPDASDAEMTHAAERAEAHDFIGTLADAKGRTGYDAHVGERGVKL 503 T L + ++ NI YG+P A+ ++ AA+ A HDFI +L D GY + VGERG+KL Sbjct: 445 TVLFNDTIEYNIAYGKPGATREQIVAAAKAAYIHDFIESLPD-----GYASMVGERGLKL 499 Query: 504 SGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEAAIQTSLYKLMEGKTVVAIAHRLST 563 SGG++QR+AIAR +LKD IL+ DEATSALDS E AIQ L ++ +T + IAHRLST Sbjct: 500 SGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTTLVIAHRLST 559 Query: 564 IAAMDRLIVLDQGRIVEQGTHAELLAANGLYARLWSHQSGG 604 I +++VLD GRIVE+GTHA LL A GLYA++W Q G Sbjct: 560 IVNAQQILVLDHGRIVERGTHAGLLMAGGLYAQMWLRQQAG 600 >gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 614 Score = 242 bits (618), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 193/515 (37%), Positives = 284/515 (55%), Gaps = 59/515 (11%) Query: 116 LRWNFHRLMLSQSMSFYQNEFAGRVA------TKVMQT------ALAVRDFCMIVG--DI 161 LR + +++QS F++ G V T ++QT ++A+R+ + +G + Sbjct: 126 LRSAVYAHVVTQSPEFFETTKTGEVLSRLTTDTTLIQTLVGTSISMALRNALLFIGGMSM 185 Query: 162 LVFITIYFATLIGVVGSFDIWMLAPFFIWLAAFAVALRYFVPRLSAVARNQADARSLMTG 221 L F + ++I I MLA + + + +R +LS ++++ S M G Sbjct: 186 LFFTSARLTSII-------IVMLAAVVLPIVFYGRRVR----KLSRASQDRVADASAMAG 234 Query: 222 RITDAYTNIATVKLFSHAGREAD-YARSAMREFLVTVNQQMRLVSGFEVVNHLLNMVLII 280 I +A + TV+ F+H EA +A+S R F T +++R S VV ++L+ Sbjct: 235 EILNA---MPTVQAFTHEEIEARRFAQSVERAF-GTAMERVRARSLLTVVA----ILLVF 286 Query: 281 GATGVSLYLWTQGKVGVGAVAASTAMALRLNGI---AHWVMWEMSSLFEHVGTVQDGINT 337 GA + LW +G AV + L A V + +L E +G Q Sbjct: 287 GA--IVFVLW----LGAHAVMEGSMSGGELGQFILYASLVAGSLGALSEVMGDTQRAAGA 340 Query: 338 LARAHDVKDA---------PDAQPLKVSQGE-LRFEGVSFSYGAAP-RPVVDKLDLVIRP 386 R D+ A P+ P + + G L +GV F Y + P P + +L L ++P Sbjct: 341 TERLLDLLAAHSPVQSVLLPEKLPPRTANGAALTVQGVDFHYPSRPGHPSLTQLSLTVQP 400 Query: 387 GEKIGLVGRSGAGKSTIVNLLLRFYDIEGGRITIDGQDIAHVTQDSLRAQIGMVTQDTSL 446 GE + +VG SGAGK+T+ LLLRFYD + G+I +DG DI ++ +LR IG+V QDT + Sbjct: 401 GETVAIVGPSGAGKTTLFQLLLRFYDPQQGQILLDGVDIRYLDLQALRGAIGIVPQDTVI 460 Query: 447 LHRSVRENITYGRPDASDAEMTHAAERAEAHDFIGTLADAKGRTGYDAHVGERGVKLSGG 506 + ENI +GRP+ASDAE+ AA+ A AH+FI L + Y +GERGV+LSGG Sbjct: 461 FSANAMENIRFGRPEASDAEVIAAAQMAAAHEFIERLPGS-----YACFLGERGVRLSGG 515 Query: 507 QRQRIAIARVMLKDAPILLLDEATSALDSEVEAAIQTSLYKLMEGKTVVAIAHRLSTIAA 566 QRQRIAIAR +LK+ P+LLLDEATSALD+E E +Q +L M G+T + IAHRL+T+ Sbjct: 516 QRQRIAIARALLKNPPLLLLDEATSALDAESERLVQGALEAAMVGRTTLVIAHRLATVQR 575 Query: 567 MDRLIVLDQGRIVEQGTHAELLAANGLYARLWSHQ 601 DR+IVL+ GRIVE GTHAEL+A +GLYA L + Q Sbjct: 576 ADRIIVLEHGRIVESGTHAELVARDGLYAGLAALQ 610 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 230 bits (586), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 152/393 (38%), Positives = 213/393 (54%), Gaps = 21/393 (5%) Query: 217 SLMTGRITDAYTNIATVKLFSHAGREADYARSAMREFLVTVNQQMRLVSGFEVVNHLLNM 276 S +T + D I VK F+ RE R A R L+ ++ ++ S F L Sbjct: 362 SEVTNVLADTIPGIRVVKAFAQEKREVARFREANRHNLMVNDRVNKIWSLFTPTVTFLTE 421 Query: 277 VLIIGATGVSLYLWTQGKVGVGAVAASTAMALRLNGIAHWVMWEMSSLFEHVGTVQDGIN 336 V ++ ++ + ++ VG + A A R + S+ V Q Sbjct: 422 VGLLVVWVFGIWQVSSNQITVGVLTAFLAYISRFYT-------RLDSMSRIVSVTQKAAA 474 Query: 337 TLARAHDVKDAPDAQP-------LKVSQGELRFEGVSFSYGAAPRPVVDKLDLVIRPGEK 389 R D+ D + P L+ QG + + F YG R V+ + L I PGE Sbjct: 475 GAKRIFDILDHVSSVPEPANPVHLEKVQGAIEVRNIGFRYGN--RAVIRNMSLSIAPGEM 532 Query: 390 IGLVGRSGAGKSTIVNLLLRFYDIEGGRITIDGQDIAHVTQDSLRAQIGMVTQDTSLLHR 449 IGLVG SG+GKST+VNL+ RFYD+ G I IDG DI + R IG+V Q+ L Sbjct: 533 IGLVGHSGSGKSTMVNLICRFYDVSEGAIRIDGVDIRSLPISEYRRNIGLVLQEPFLFFG 592 Query: 450 SVRENITYGRPDASDAEMTHAAERAEAHDFIGTLADAKGRTGYDAHVGERGVKLSGGQRQ 509 ++ ENI YG+P+A+ E+ AA A AH+FI L GYD+ VGERG LSGG+RQ Sbjct: 593 TIAENIAYGKPEATREEIIAAARAAHAHEFILRLPQ-----GYDSLVGERGQALSGGERQ 647 Query: 510 RIAIARVMLKDAPILLLDEATSALDSEVEAAIQTSLYKLMEGKTVVAIAHRLSTIAAMDR 569 RI+IAR +L D IL+LDEATS++D+ E IQ +L L++G+T +AIAHRLST+ DR Sbjct: 648 RISIARALLIDPRILILDEATSSVDTTTEKEIQKALDNLVQGRTTIAIAHRLSTLRKADR 707 Query: 570 LIVLDQGRIVEQGTHAELLAANGLYARLWSHQS 602 L+VLD+G++VE G H EL+A G Y +L+ Q+ Sbjct: 708 LVVLDRGQVVEVGNHEELMAREGHYYKLYQAQA 740 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 229 bits (585), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 130/285 (45%), Positives = 176/285 (61%), Gaps = 17/285 (5%) Query: 325 FEHVGTVQDGINTLARAHDVKDAP-----DAQPLKVSQGELRFEGVSFSYGAAPRPVVDK 379 F+ +G +++R DV DA + L G + F+ VSF Y V+ Sbjct: 443 FQQIGI------SMSRLADVLDARTEVAGNRTRLPRVNGAISFDLVSFRYRPETPEVIRG 496 Query: 380 LDLVIRPGEKIGLVGRSGAGKSTIVNLLLRFYDIEGGRITIDGQDIAHVTQDSLRAQIGM 439 L L IRPGE IG+VGRSG+GKST+ L+ R Y E GRI++DGQDIA + SLR QIG+ Sbjct: 497 LSLQIRPGEVIGIVGRSGSGKSTLAKLVQRLYICETGRISVDGQDIAIIDTASLRQQIGV 556 Query: 440 VTQDTSLLHRSVRENITYGRPDASDAEMTHAAERAEAHDFIGTLADAKGRTGYDAHVGER 499 V Q+ +L RS+R+NI P ++ AA+ A AHDFI L + GYD VGE+ Sbjct: 557 VLQENTLFSRSIRDNIALADPSTPIEQIIEAAKLAGAHDFICELPE-----GYDTMVGEQ 611 Query: 500 GVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEAAIQTSLYKLMEGKTVVAIAH 559 G LSGGQRQRIAIAR ++ + IL+ DEATSALD E E IQ ++ ++ G+TV+ IAH Sbjct: 612 GSGLSGGQRQRIAIARALITNPGILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAH 671 Query: 560 RLSTIAAMDRLIVLDQGRIVEQGTHAELL-AANGLYARLWSHQSG 603 RLS + DR+IV+++GR+ E G+H EL+ G+YA L Q+G Sbjct: 672 RLSAVRDADRIIVMERGRVAESGSHDELIDLPGGIYAHLHRLQAG 716 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,834,108 Number of extensions: 76290 Number of successful extensions: 745 Number of sequences better than 1.0e-08: 123 Number of HSP's gapped: 596 Number of HSP's successfully gapped: 136 Length of query: 617 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 526 Effective length of database: 1,188,985 Effective search space: 625406110 Effective search space used: 625406110 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)