BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0506.p (554 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314057|ref|YP_003778149.1| methyl-accepting chemotaxis pro... 1072 0.0 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 366 e-102 gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis tra... 355 4e-99 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 352 7e-98 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 347 2e-96 >gi|300314057|ref|YP_003778149.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 554 Score = 1072 bits (2772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 545/554 (98%), Positives = 545/554 (98%) Query: 1 MKPAADKPASLSVATRLALSFALVLAMMLVLTVVSISRVNAINDSLTTVSDDNNVKQRYA 60 MKPAADKPASLSVATRLALSFALVLAMMLVLTVVSISRVNAINDSLTTVSDDNNVKQRYA Sbjct: 1 MKPAADKPASLSVATRLALSFALVLAMMLVLTVVSISRVNAINDSLTTVSDDNNVKQRYA 60 Query: 61 INFRGSVHDRAIALRDLTLVGDTELKDVSALISKLDADYQRSAKLLDEMFAGMQVRPEER 120 INFRGSVHDRAIALRDLTLVGDTELKDVSALISKLDADYQRSAKLLDEMFAGMQVRPEER Sbjct: 61 INFRGSVHDRAIALRDLTLVGDTELKDVSALISKLDADYQRSAKLLDEMFAGMQVRPEER 120 Query: 121 ASLDSIKAVEARAMPLAAKVIAARSSGDVEGARQLMLSQAKPAFVDWLAAINHFIDMEES 180 ASLDSIKAVEARAMPLAAKVIAARSSGDVEGARQLMLSQAKPAFVDWLAAINHFIDMEES Sbjct: 121 ASLDSIKAVEARAMPLAAKVIAARSSGDVEGARQLMLSQAKPAFVDWLAAINHFIDMEES 180 Query: 181 MSQAESAKARTVAREFKAFMLVLLAAALVAGTVLAMLITRSIRGALGAEPDEVKELALAV 240 MSQAESAKARTVAREFKAFMLVLLAAALVAGTVLAMLITRSIRGALGAEPDEVKELALAV Sbjct: 181 MSQAESAKARTVAREFKAFMLVLLAAALVAGTVLAMLITRSIRGALGAEPDEVKELALAV 240 Query: 241 DRGELYHAAALPLAGKTRARSIMATLSEMSGNLRHTVTRVRDAADGVATISSQIAAGNRD 300 DRGELYHAAALPLAGKTRARSIMATLSEMSGNLRHTVTRVRDAADGVATISSQIAAGNRD Sbjct: 241 DRGELYHAAALPLAGKTRARSIMATLSEMSGNLRHTVTRVRDAADGVATISSQIAAGNRD 300 Query: 301 LAARTEDQAASLEETASAMEQLTATVKQNDNHARQANQLAHNASEIARQGGAIVDNVVDT 360 LAARTEDQAASLEETASAMEQLTATVKQNDNHARQANQLAHNASEIARQGGAIVDNVVDT Sbjct: 301 LAARTEDQAASLEETASAMEQLTATVKQNDNHARQANQLAHNASEIARQGGAIVDNVVDT 360 Query: 361 MAAINVSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRS 420 MAAINVSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRS Sbjct: 361 MAAINVSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRS 420 Query: 421 AAAAKEVKQLIDDSVQNVENGTHLVEQAGQTMEQIVASVQQVTDVMGEISSASHEQSLGI 480 AAAAKEVKQLIDDSVQNVENGTHLVEQAGQTMEQIVASVQQVTDVMGEISSASHEQSLGI Sbjct: 421 AAAAKEVKQLIDDSVQNVENGTHLVEQAGQTMEQIVASVQQVTDVMGEISSASHEQSLGI 480 Query: 481 EEVHKAIALMDQVTQHNAALVEQASAAVATLQEQAVNLNQAVGVFQLERPDQSPRARARA 540 EEVHKAIALMDQVTQHNAALVEQASAAVATLQEQAVNLNQAVGVFQLERPDQSP R Sbjct: 481 EEVHKAIALMDQVTQHNAALVEQASAAVATLQEQAVNLNQAVGVFQLERPDQSPTLRTIN 540 Query: 541 RARARALAMDARAA 554 A ALAMDARAA Sbjct: 541 VKAAPALAMDARAA 554 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 366 bits (939), Expect = e-102, Method: Compositional matrix adjust. Identities = 251/531 (47%), Positives = 345/531 (64%), Gaps = 30/531 (5%) Query: 10 SLSVATRLALSFALVLAMMLVLTVVSISRVNAINDSLTTVSDDNNVKQRYAINFRGSVHD 69 +L VA RLA FA ++A++ V++V + ++N IN ++ + +D +K R+A + R V++ Sbjct: 7 NLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGVNE 66 Query: 70 RAIALRDLTLVGDTELKDVS-ALISKLDADYQRSAKLLDEMFAG--MQVRPEERASLDSI 126 + LR + + D E + + ++L+ +++ + LD++ A V ++ +LD Sbjct: 67 QIKYLRGIAI--DIENRPANEKRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKALD-- 122 Query: 127 KAVEARAMPLAAK--VIAARSSGDVEGARQLMLSQAKPAFVDWLAAINHFIDMEESMSQA 184 EAR A+K +A +G+ A + +L + ++LA F D +++ QA Sbjct: 123 ---EARIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQA 179 Query: 185 ESAKARTVAREFKAFMLVLLA--AALVAGTVLAMLITRSIRGALGAEPDEVKELALAVDR 242 E AKA VA A + L AA++A +L L+ RSI VK L AV Sbjct: 180 EGAKA--VADGAMAIEVTLACSMAAVLAAIILGYLMARSI----------VKPLTEAVRV 227 Query: 243 GELYHAAALPLAGKTRAR----SIMATLSEMSGNLRHTVTRVRDAADGVATISSQIAAGN 298 E A L + +R +M L +M+ NL V+ VR + + T S +IA+GN Sbjct: 228 AENVAAGDLTTRIEPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGN 287 Query: 299 RDLAARTEDQAASLEETASAMEQLTATVKQNDNHARQANQLAHNASEIARQGGAIVDNVV 358 DL+ARTE QA SLEETASAME++T+TV+QN ++ARQANQ+A +ASEIA QGG IV VV Sbjct: 288 LDLSARTEQQAGSLEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVV 347 Query: 359 DTMAAINVSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQ 418 TM IN SSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVR+LAQ Sbjct: 348 HTMDEINQSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQ 407 Query: 419 RSAAAAKEVKQLIDDSVQNVENGTHLVEQAGQTMEQIVASVQQVTDVMGEISSASHEQSL 478 RSAAAAKE+K LI DSV VE G+ LV QAG TMEQ+V+SV+ VTD++ EIS+AS EQS Sbjct: 408 RSAAAAKEIKALIADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSS 467 Query: 479 GIEEVHKAIALMDQVTQHNAALVEQASAAVATLQEQAVNLNQAVGVFQLER 529 GIEE+++A+ MD+ TQ NAALVEQA+AA ++QEQAV L Q++ +F+LE+ Sbjct: 468 GIEEINRAVTQMDEGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQ 518 >gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 547 Score = 355 bits (912), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 223/526 (42%), Positives = 326/526 (61%), Gaps = 6/526 (1%) Query: 10 SLSVATRLALSFALVLAMMLVLTVVSISRVNAINDSLTTVSDDNNVKQRYAINFRGSVHD 69 +L V TRLAL F L+L +L ++ + + + +ND+LT ++D NN + + R ++ Sbjct: 3 NLKVVTRLALGFGLILVFLLSISALGLYGMARVNDALTDITDVNNAEIKLVTALRNALSQ 62 Query: 70 RAIALRDLTLVGD-TELKDVSALISKLDADYQRSAKLLDEMFAGMQVRPE-ERASLDSIK 127 RA+A+R++ L+ + +++ S +++ + Y + LD+MF E ER L IK Sbjct: 63 RALAIRNIALLDEQADMQVESQTLARQEKLYADAYAALDKMFTTEAATTERERQLLVQIK 122 Query: 128 AVEARAMPLAAKVIAARSSGDVEGARQLMLSQAKPAFVDWLAAINHFIDMEESMSQAESA 187 EA +PL AK + A +++++Q +P W+ ++ + E+ ++ + Sbjct: 123 NDEAATLPLMAKAVQLGLENKAAEAGKMLITQVRPKQQAWIKSLTELAEFEDQLNDEAAT 182 Query: 188 KARTVAREFKAFMLVLLAAALVAGTVLAMLITRSIRGALGAEPDEVKELALAVDRGELYH 247 AR + + AAL+ G + LI RSI LGAEP E + +A + G+L Sbjct: 183 SARNTYAWLRMVTVAAALAALLVGVAASALIARSILRQLGAEPSEAQAVARDIASGDL-- 240 Query: 248 AAALPLAGKTRARSIMATLSEMSGNLRHTVTRVRDAADGVATISSQIAAGNRDLAARTED 307 A + + S+MA++ +M L ++ AA+ ++ S QIA GN DL+ RTE+ Sbjct: 241 -TATVRVREGDSSSLMASIEQMRYQLNVIAHGIKSAAETISVASGQIAQGNFDLSQRTEE 299 Query: 308 QAASLEETASAMEQLTATVKQNDNHARQANQLAHNASEIARQGGAIVDNVVDTMAAINVS 367 QAASLEETA++ME+LT TV+QN HA +A +L+ A+E A G D VV TM I S Sbjct: 300 QAASLEETAASMEELTTTVRQNTQHASEALRLSGGATETAAAGSQAFDRVVQTMDRITAS 359 Query: 368 SRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEV 427 S K+ DII VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA AAKE+ Sbjct: 360 SSKMSDIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVAAKEI 419 Query: 428 KQLIDDSVQNVENGTHLVEQAGQTMEQIVASVQQVTDVMGEISSASHEQSLGIEEVHKAI 487 K+LI +S+ +V G+ LV AGQ M QIVASVQ+ ++M I++A+ EQ GIE+++ A+ Sbjct: 420 KELIGESMSHVGAGSQLVSDAGQQMAQIVASVQRFGEIMNNIATATQEQGSGIEQINTAM 479 Query: 488 ALMDQVTQHNAALVEQASAAVATLQEQAVNLNQAVGVFQLERPDQS 533 MDQVTQ NAALVE+ASAA +L +QA L + V VF++ R D+S Sbjct: 480 VQMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKI-RQDRS 524 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 352 bits (902), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 250/557 (44%), Positives = 346/557 (62%), Gaps = 59/557 (10%) Query: 11 LSVATRLALSFALVLAMMLVLTVVSISRVNAINDSLTTVSDDNNVKQRYAINFRGSVHDR 70 L ++ +L +F +V+AM+ L V SI +++ +N + T +S N+ S+ Sbjct: 7 LRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEIS----------TNWLPSIRTL 56 Query: 71 AIALRDLTLVGDTELKDVSALISKLDADYQRSAKLLDEMFAGMQVR-------------- 116 A ++ + EL+ + A + AK +E+ GMQV+ Sbjct: 57 ARLQLAMSRLRSFELQHILA----------KDAKEYEEVERGMQVQMNNLKTAQAEYVTQ 106 Query: 117 ---PEERASLDSIKAVEARAMPLAAKVIAARSSGDVEGARQLMLSQAKPAF------VDW 167 PEE+A ++ + A + K+IA G E AR L ++ A+ +D Sbjct: 107 ISEPEEKAIYPEVEKLIATFVSEHDKIIALSRQGKDEEARNLQRGESTKAYRTSLQQIDK 166 Query: 168 LAAIN-HFIDMEESMSQAESAKARTVAREFKAFMLVLLAAALVAGTVLAMLITRSIRGAL 226 LAA+N D+ + A A+AR +++V +AA + +LA+ ++R I Sbjct: 167 LAAVNDKGADISNKQADAIYAQARL-------WIIVTVAACIGLAMLLAVWVSRLI---- 215 Query: 227 GAEP-DEVKELALAVDRGELYHAAALPLAGKTRARSIMATLSEMSGNLRHTVTRVRDAAD 285 A P +E +A V G+L + AGK ++ L M+ +L V +VR Sbjct: 216 -ARPLEEAVSVAQRVAGGDL--TTRIEPAGKDETGQLLVALKSMNDSLVGIVGQVRMGTQ 272 Query: 286 GVATISSQIAAGNRDLAARTEDQAASLEETASAMEQLTATVKQNDNHARQANQLAHNASE 345 + T S++IA+GN DL++RTE+QA+SLEETASAME+LT+TVKQN ++ARQANQLA +ASE Sbjct: 273 TITTASTEIASGNLDLSSRTEEQASSLEETASAMEELTSTVKQNADNARQANQLAVSASE 332 Query: 346 IARQGGAIVDNVVDTMAAINVSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRG 405 +A QGGA+V+ VVDTM +IN SSRKI DIIGVIDGIAFQTNILALNAAVEAARAGEQGRG Sbjct: 333 VASQGGAVVNQVVDTMGSINASSRKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRG 392 Query: 406 FAVVATEVRNLAQRSAAAAKEVKQLIDDSVQNVENGTHLVEQAGQTMEQIVASVQQVTDV 465 FAVVA+EVR+LAQRSA AAKE+K+LI+ SV V+ G+ LVE+AG TM ++V SV++VTD+ Sbjct: 393 FAVVASEVRSLAQRSAGAAKEIKELIEGSVAQVDMGSKLVERAGITMSEVVQSVRRVTDI 452 Query: 466 MGEISSASHEQSLGIEEVHKAIALMDQVTQHNAALVEQASAAVATLQEQAVNLNQAVGVF 525 +GEISSAS EQS GIE+V+ AIA MD+VTQ NAALVE+A+AA +LQEQA L Q VG F Sbjct: 453 VGEISSASQEQSEGIEQVNLAIAQMDEVTQQNAALVEEAAAAAQSLQEQAETLTQTVGFF 512 Query: 526 QLERPDQSPRARARARA 542 +LE+ P +R RA Sbjct: 513 KLEQQPDEPASRPPVRA 529 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 347 bits (889), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 227/519 (43%), Positives = 329/519 (63%), Gaps = 9/519 (1%) Query: 10 SLSVATRLALSFALVLAMMLVLTVVSISRVNAINDSLTTVSDDNNVKQRYAINFRGSVHD 69 +L + RLA+ F +L +M V+ + + R+ +I D+ ++ K+R A+ + ++ + Sbjct: 3 NLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAIKE 62 Query: 70 RAIALRDLTLVGDTELKDVSALISKLDADYQRSAKLLDEMFAGMQVRPEERASLDSIKAV 129 + R ++ + + ++DA R ++L E+ A + EE+ D + + Sbjct: 63 NGV--RTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAI-TDAEEKRLFDEVGKL 119 Query: 130 EARAMPLAAKVIAARSSGDVEGARQLMLSQAKPAFVDWLAAINHFIDMEESMSQAESAKA 189 A + +++GD AR++ + D+ + + D ++ + +A Sbjct: 120 RAAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAI 179 Query: 190 RTVAREFKAFMLVLLAAALVAGTVLAMLITRSIRGALGAEPDEVKELALAVDRGELYHAA 249 R ++ +L L A +V G LA L+TRSI L ++ +A V G+L + Sbjct: 180 NRDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPL----NQAVTIAETVAAGDL--TS 233 Query: 250 ALPLAGKTRARSIMATLSEMSGNLRHTVTRVRDAADGVATISSQIAAGNRDLAARTEDQA 309 + + + ++A L M+GNL V RVR + + T S +IA GN DL+ARTE QA Sbjct: 234 RIDSSSRDETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQA 293 Query: 310 ASLEETASAMEQLTATVKQNDNHARQANQLAHNASEIARQGGAIVDNVVDTMAAINVSSR 369 SLEETASAMEQLT+TVKQN ++ARQAN+LA +AS++A QGGA+VD VV TM AI+ SS+ Sbjct: 294 GSLEETASAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQ 353 Query: 370 KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEVKQ 429 KI DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKE+KQ Sbjct: 354 KIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQ 413 Query: 430 LIDDSVQNVENGTHLVEQAGQTMEQIVASVQQVTDVMGEISSASHEQSLGIEEVHKAIAL 489 LIDDSV+ V++G+ LV +AG TM+++V SV +VT V+ EI+ AS EQS GIE+V+ AI Sbjct: 414 LIDDSVEKVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITH 473 Query: 490 MDQVTQHNAALVEQASAAVATLQEQAVNLNQAVGVFQLE 528 +D+ TQ NAALVEQA+AA ++Q+QA +L AV VF+LE Sbjct: 474 IDETTQQNAALVEQAAAAARSMQDQAASLTDAVSVFRLE 512 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.125 0.323 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,158,418 Number of extensions: 38121 Number of successful extensions: 634 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 334 Number of HSP's successfully gapped: 72 Length of query: 554 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 464 Effective length of database: 1,193,720 Effective search space: 553886080 Effective search space used: 553886080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)