BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0505.p (596 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314056|ref|YP_003778148.1| ABC transporter permease and AT... 1204 0.0 gi|300312125|ref|YP_003776217.1| ABC transporter permease and AT... 347 2e-96 gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate A... 76 6e-15 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 72 9e-14 gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPas... 69 1e-12 >gi|300314056|ref|YP_003778148.1| ABC transporter permease and ATPase components protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 1204 bits (3115), Expect = 0.0, Method: Compositional matrix adjust. Identities = 593/596 (99%), Positives = 594/596 (99%) Query: 1 MTDPHAKSATPLSPHALDTPNRASRAEIWALIRPFWVSEEKWKAWALLLSIIALNLGMVY 60 MTDPHAKSATP SPHALDTPNRASRAEIWALIRPFWVSEEKWKAWALLLSIIALNLGMVY Sbjct: 1 MTDPHAKSATPPSPHALDTPNRASRAEIWALIRPFWVSEEKWKAWALLLSIIALNLGMVY 60 Query: 61 INVRLNSWNRDMYDVLQSRDYAQFKALLWQFSWLAFIFVAIAIYSVYLKQALQIRWRYWM 120 INVRLNSWNRDMYDVLQSRDYAQFKALLWQFSWLAFIFVAIAIYSVYLKQALQIRWRYWM Sbjct: 61 INVRLNSWNRDMYDVLQSRDYAQFKALLWQFSWLAFIFVAIAIYSVYLKQALQIRWRYWM 120 Query: 121 SQRYLDRWLAHRAYYRIEQGQQGRLSDNPDQRIAEDLQALTSSTLSLVLGFISSSVTLFS 180 SQRYLDRWLAHRAYYRIEQGQQGRLSDNPDQRIAEDLQALTSSTLSLVLGFISSSVTLFS Sbjct: 121 SQRYLDRWLAHRAYYRIEQGQQGRLSDNPDQRIAEDLQALTSSTLSLVLGFISSSVTLFS 180 Query: 181 FIHILWAVSGPLTFSALGQSWVIPGYMVWFVIAYAVVGSGLVWWIGRPLVGLSFHQERFE 240 FIHILWAVSGPLTFSALGQSWVIPGYMVWFVIAYAVVGSGLVWWIGRPLVGLSFHQERFE Sbjct: 181 FIHILWAVSGPLTFSALGQSWVIPGYMVWFVIAYAVVGSGLVWWIGRPLVGLSFHQERFE 240 Query: 241 ANFRFGLIRVREHAEAVALYRGEPQEHAQLTARLDDIRRNWWEIMRLTKMLNVAVNFYGQ 300 ANFRFGLIRVREHAEAVALYRGEPQEHAQLTARLDDIRRNWWEIMRLTKMLNVAVNFYGQ Sbjct: 241 ANFRFGLIRVREHAEAVALYRGEPQEHAQLTARLDDIRRNWWEIMRLTKMLNVAVNFYGQ 300 Query: 301 FAVIFPMLVSAPRYFSGAISLGVLMQISNAFGQVQDALSWFINAFTTLASWKASINRLAG 360 FAVIFPMLVSAPRYFSGAISLGVLMQISNAFGQVQDALSWFINAFTTLASWKASINRLAG Sbjct: 301 FAVIFPMLVSAPRYFSGAISLGVLMQISNAFGQVQDALSWFINAFTTLASWKASINRLAG 360 Query: 361 FNADVERAAGMPRHIDVAPHAGSAVTLQGLQLSFPDGAPMMRALDARVESGEHVLISGPS 420 FNADVERAAGMPRHIDVAPHAGSAVTLQGLQLSFPDGAPMM ALDARVESGEHVLISGPS Sbjct: 361 FNADVERAAGMPRHIDVAPHAGSAVTLQGLQLSFPDGAPMMHALDARVESGEHVLISGPS 420 Query: 421 GCGKSTLMRAMADIWPYGQGRIQLPQDAPAMFLPQRSYLPIGTLRAALSYPAAEGSFDDA 480 GCGKSTLMRAMADIWPYGQGRIQLPQDAPAMFLPQRSYLPIGTLRAALSYPAAEGSFDDA Sbjct: 421 GCGKSTLMRAMADIWPYGQGRIQLPQDAPAMFLPQRSYLPIGTLRAALSYPAAEGSFDDA 480 Query: 481 LITRYLGLCRLAHLADRLDVAANWSHALSPGEQQRLAFVRVFLNRPRLVFLDEASSAMDG 540 LITRYLGLCRLAHLADRLDVAANWSHALSPGEQQRLAFVRVFLNRPRLVFLDEASSAMDG Sbjct: 481 LITRYLGLCRLAHLADRLDVAANWSHALSPGEQQRLAFVRVFLNRPRLVFLDEASSAMDG 540 Query: 541 QTEEVLYAALPRELPGVTVISIAHRETLARFHDVRWHFVAPGEGEGGGHRVEMAPM 596 QTEEVLYAALPRELPGVTVISIAHRETLARFHDVRWHFVAPGEGEGGGHRVEMAP+ Sbjct: 541 QTEEVLYAALPRELPGVTVISIAHRETLARFHDVRWHFVAPGEGEGGGHRVEMAPV 596 >gi|300312125|ref|YP_003776217.1| ABC transporter permease and ATPase components protein [Herbaspirillum seropedicae SmR1] Length = 594 Score = 347 bits (890), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 198/550 (36%), Positives = 304/550 (55%), Gaps = 5/550 (0%) Query: 25 RAEIWALIRPFWVSEEKWKAWALLLSIIALNLGMVYINVRLNSWNRDMYDVLQSRDYAQF 84 R W L + +W S E + L I+ VY ++R+N W YD + S + Sbjct: 23 RTSTWWLFKSYWTSREAPVSALLAAFIVGSGFVGVYFSLRVNQWTGKFYDAIGSGRFGTI 82 Query: 85 KALLWQFSWLAFIFVAIAIYSVYLKQALQIRWRYWMSQRYLDRWLAHRAYYRIEQGQQGR 144 ALL F L + +AI + L++RWR W++ +D+W AY+RIE+ + Sbjct: 83 PALLTLFLGLIMVAATLAISASVAADVLKLRWRTWLTTTLIDQWTRSGAYFRIERD---K 139 Query: 145 LSDNPDQRIAEDLQALTSSTLSLVLGFISSSVTLFSFIHILWAVSGPLTFSALGQSWVIP 204 L DN DQRI+ED++ T+++ I V+ +F +LW +SG + IP Sbjct: 140 LLDNADQRISEDVKLFVDYTVTITSHLIHVPVSAVTFSIVLWELSGNYLLELGHLAITIP 199 Query: 205 GYMVWFVIAYAVVGSGLVWWIGRPLVGLSFHQERFEANFRFGLIRVREHAEAVALYRGEP 264 YM++ V Y+ L +GR L+ ++ Q++ EA+FR ++++RE AE +A Y G Sbjct: 200 AYMLFAVYLYSGSTLLLTHLLGRSLIPVNIRQQKVEADFRALMVQIREGAEQIAFYDGAS 259 Query: 265 QEHAQLTARLDDIRRNWWEIMRLTKMLNVAVNFYGQFAVIFPMLVSAPRYFSGAISLGVL 324 E ++L + IR N W I+R+T + V GQ + I P+L+ P+ +G ++LG + Sbjct: 260 VEASRLRSTFASIRANTWRIIRVTAQVMFGVQVPGQISSILPVLLVLPQLMAGTMTLGGM 319 Query: 325 MQISNAFGQVQDALSWFINAFTTLASWKASINRL-AGFNADVERAAGMPRHIDVAPHAGS 383 M++S AFG V L++F A+ + A+W+A + RL A +A+ ++ + P + Sbjct: 320 MRVSAAFGSVSSTLAYFPQAYQSFAAWRAVVRRLLALLDANEIKSPTFELTVLQRPQQ-T 378 Query: 384 AVTLQGLQLSFPDGAPMMRALDARVESGEHVLISGPSGCGKSTLMRAMADIWPYGQGRIQ 443 + + L L+ P G P+ R V+ G LI G SG GKSTL+RA+A IWP+G G I Sbjct: 379 TIEVGALTLTDPHGNPLSRIPAFSVKHGARCLIRGRSGSGKSTLLRALAGIWPFGIGSIT 438 Query: 444 LPQDAPAMFLPQRSYLPIGTLRAALSYPAAEGSFDDALITRYLGLCRLAHLADRLDVAAN 503 +P MF+PQ+SY+P+G+LR AL+YP AE DAL L LA LD Sbjct: 439 VPARTSMMFVPQKSYVPVGSLRQALAYPGAETDVSDALAQDILAAVGLAQFLPLLDQPDR 498 Query: 504 WSHALSPGEQQRLAFVRVFLNRPRLVFLDEASSAMDGQTEEVLYAALPRELPGVTVISIA 563 W LS GEQQRLAF R+ + RP +F+DEA+SA+D ++E+ +Y+ L LP T+IS+A Sbjct: 499 WGGRLSGGEQQRLAFARILIARPDHIFIDEATSALDDESEQRMYSLLLERLPHSTLISVA 558 Query: 564 HRETLARFHD 573 HR+ +A FHD Sbjct: 559 HRKEVAAFHD 568 >gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 265 Score = 76.3 bits (186), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 64/199 (32%), Positives = 98/199 (49%), Gaps = 26/199 (13%) Query: 382 GSAVTLQ--GLQLSFPDGAPMMRALDARVESGEHVLISGPSGCGKSTLMRAMA------- 432 GS+V+L+ GL + D +M +D + +GE V + GPSGCGKSTL+ A+A Sbjct: 4 GSSVSLKRVGLTIGSND---IMAGIDLDIRAGEFVCLLGPSGCGKSTLLNAIAGFQDVSG 60 Query: 433 DIWPYGQGRIQLPQ-DAPAMFLPQRSYLPIGTLRAALSYP----AAEGSFDDALITRYLG 487 +I G+ R++ P D +F + P ++R + Y + A RY+ Sbjct: 61 EISVDGK-RVKGPGLDRGVVFQSSEALFPWLSVRENVEYGLKLRGVASAERRAAAERYVS 119 Query: 488 LCRLAHLADRLDVAANWSHALSPGEQQRLAFVRVFLNRPRLVFLDEASSAMDGQTEEVLY 547 L L H D+ + LS G +QR RV +N P +V +DE A+D QT EVL Sbjct: 120 LVGLKHAIDK------FPAELSGGMRQRAQIARVLVNEPSVVLMDEPFGALDAQTREVLQ 173 Query: 548 AALPR--ELPGVTVISIAH 564 + L R + G T++ + H Sbjct: 174 SELDRIWKSTGCTIVFVTH 192 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 72.4 bits (176), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 74/283 (26%), Positives = 123/283 (43%), Gaps = 38/283 (13%) Query: 316 SGAISLGVLMQISNAFGQVQDALSWFINAFTTLASWKASINRLAGFNADVERAAGMPRHI 375 S I++GVL AF L++ +T L S ++ A +R + H+ Sbjct: 437 SNQITVGVL----TAF------LAYISRFYTRLDSMSRIVSVTQKAAAGAKRIFDILDHV 486 Query: 376 DVAPHAGSAVTLQGLQ-------LSFPDGA-PMMRALDARVESGEHVLISGPSGCGKSTL 427 P + V L+ +Q + F G ++R + + GE + + G SG GKST+ Sbjct: 487 SSVPEPANPVHLEKVQGAIEVRNIGFRYGNRAVIRNMSLSIAPGEMIGLVGHSGSGKSTM 546 Query: 428 MRAMADIWPYGQGRIQLPQDAPAMFLP------------QRSYLPIGTLRAALSYPAAEG 475 + + + +G I++ LP Q +L GT+ ++Y E Sbjct: 547 VNLICRFYDVSEGAIRI-DGVDIRSLPISEYRRNIGLVLQEPFLFFGTIAENIAYGKPEA 605 Query: 476 SFDDALITRYLG-----LCRLAHLADRLDVAANWSHALSPGEQQRLAFVRVFLNRPRLVF 530 + ++ + + RL D L ALS GE+QR++ R L PR++ Sbjct: 606 TREEIIAAARAAHAHEFILRLPQGYDSL--VGERGQALSGGERQRISIARALLIDPRILI 663 Query: 531 LDEASSAMDGQTEEVLYAALPRELPGVTVISIAHRETLARFHD 573 LDEA+S++D TE+ + AL + G T I+IAHR + R D Sbjct: 664 LDEATSSVDTTTEKEIQKALDNLVQGRTTIAIAHRLSTLRKAD 706 >gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 618 Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 80/310 (25%), Positives = 131/310 (42%), Gaps = 38/310 (12%) Query: 285 MRLTKMLNVAVNFYGQFAVIFPMLVSAPRYFSGAISLGVLMQISNAFGQVQDALSWFI-- 342 MRL V + +I VS + G + +G + + ++ W + Sbjct: 261 MRLVSGFEVVNHLLNMVLIIGATGVSLYLWTQGKVGVGAVAASTAMALRLNGIAHWVMWE 320 Query: 343 --NAFTTLASWKASINRLAGFNADVERAAGMPRHIDVAPHAGSAVTLQGLQLSFPDGA-- 398 + F + + + IN LA RA + D P S L+ +SF G Sbjct: 321 MSSLFEHVGTVQDGINTLA-------RAHDVKDAPDAQPLKVSQGELRFEGVSFSYGGAA 373 Query: 399 --PMMRALDARVESGEHVLISGPSGCGKSTLMRAMADIWPYGQGRI--------QLPQD- 447 P++ LD + GE + + G SG GKST++ + + GRI + QD Sbjct: 374 PRPVVDKLDLVIRPGEKIGLVGRSGAGKSTIVNLLLRFYDIEGGRITIDGQDIAHVTQDS 433 Query: 448 --APAMFLPQRSYLPIGTLRAALSYPAAEGSFDDALIT----RYLGLCRLAHLADRLDVA 501 A + Q + L ++R ++Y + S DA +T R + LAD Sbjct: 434 LRAQIGMVTQDTSLLHRSVRENITYGRPDAS--DAEMTHAAERAEAHDFIGTLADAKGRT 491 Query: 502 ANWSHA------LSPGEQQRLAFVRVFLNRPRLVFLDEASSAMDGQTEEVLYAALPRELP 555 +H LS G++QR+A RV L ++ LDEA+SA+D + E + +L + + Sbjct: 492 GYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEAAIQTSLYKLME 551 Query: 556 GVTVISIAHR 565 G TV++IAHR Sbjct: 552 GKTVVAIAHR 561 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.137 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,078,209 Number of extensions: 93471 Number of successful extensions: 724 Number of sequences better than 1.0e-08: 26 Number of HSP's gapped: 714 Number of HSP's successfully gapped: 26 Length of query: 596 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 505 Effective length of database: 1,188,985 Effective search space: 600437425 Effective search space used: 600437425 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)