BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0504.p
         (282 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314055|ref|YP_003778147.1| branched-chain amino acid amino...   578   e-166
gi|300310002|ref|YP_003774094.1| branched-chain amino acid amino...    91   7e-20

>gi|300314055|ref|YP_003778147.1| branched-chain amino acid
           aminotransferase/4-amino-4-deoxychorismate lyase
           [Herbaspirillum seropedicae SmR1]
          Length = 282

 Score =  578 bits (1490), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 282/282 (100%), Positives = 282/282 (100%)

Query: 1   MNEAIVYLNGELTPLSEARVPVLDRGFIFGDGIYEVIPMYGRKAFRGKQHLARLFRSLAG 60
           MNEAIVYLNGELTPLSEARVPVLDRGFIFGDGIYEVIPMYGRKAFRGKQHLARLFRSLAG
Sbjct: 1   MNEAIVYLNGELTPLSEARVPVLDRGFIFGDGIYEVIPMYGRKAFRGKQHLARLFRSLAG 60

Query: 61  IGIPNPHDEAGWMDLIDQVVQANGLQDQMIYLQVTRGVAKRAHAFPKEVVPTVLIMTNPM 120
           IGIPNPHDEAGWMDLIDQVVQANGLQDQMIYLQVTRGVAKRAHAFPKEVVPTVLIMTNPM
Sbjct: 61  IGIPNPHDEAGWMDLIDQVVQANGLQDQMIYLQVTRGVAKRAHAFPKEVVPTVLIMTNPM 120

Query: 121 ALPSAAMLEKGVACVTMEDRRWLNCQIKSTSLLGNVLAAQFAAENEVTEAIQFRDGFLSE 180
           ALPSAAMLEKGVACVTMEDRRWLNCQIKSTSLLGNVLAAQFAAENEVTEAIQFRDGFLSE
Sbjct: 121 ALPSAAMLEKGVACVTMEDRRWLNCQIKSTSLLGNVLAAQFAAENEVTEAIQFRDGFLSE 180

Query: 181 ASASNVWVVKDGKISAPPKDNLILEGIRYGLMEELCAEQGIALESRRITREEVLAADELM 240
           ASASNVWVVKDGKISAPPKDNLILEGIRYGLMEELCAEQGIALESRRITREEVLAADELM
Sbjct: 181 ASASNVWVVKDGKISAPPKDNLILEGIRYGLMEELCAEQGIALESRRITREEVLAADELM 240

Query: 241 ISSASKEVLPVVTLDGQPVGSGRPGPVFARVYAAYQAAKARL 282
           ISSASKEVLPVVTLDGQPVGSGRPGPVFARVYAAYQAAKARL
Sbjct: 241 ISSASKEVLPVVTLDGQPVGSGRPGPVFARVYAAYQAAKARL 282


>gi|300310002|ref|YP_003774094.1| branched-chain amino acid
           aminotransferase [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score = 91.3 bits (225), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 124/272 (45%), Gaps = 11/272 (4%)

Query: 6   VYLNGELTPLSEARVPVLDRGFIFGDGIYEVIPMY----GRKAFRGKQHLARLFRSLAGI 61
           ++ +GEL    +A V VL     +G G++E +  Y    G   FR ++H  RL  S    
Sbjct: 11  IWKDGELIDWRDATVHVLTHTLHYGMGVFEGVRAYKTPDGTAIFRLQEHTRRLRNSAKIF 70

Query: 62  GIPNPHDEAGWMDLIDQVVQANGLQDQMIYLQVTRGVAKRAHAFPKEVVPTVLIMTNPMA 121
            +  P+D         QVV+ N L+   I   +  G  K   +     +   +   +  A
Sbjct: 71  QMEVPYDHDTLAQAQRQVVRENQLESCYIRPLIWIGSEKLGVSAKGNQIHVAVAAWSWGA 130

Query: 122 LPSAAMLEKGVACVTME-DRRWLNCQIKSTSLLG----NVLAAQFAAENEVTEAIQF-RD 175
                 L KG+   T    R  +N  +      G    ++LA Q A  +   EA+    +
Sbjct: 131 YLGEDGLNKGIRVKTSSFSRHHVNVSLVRAKACGYYINSILANQEALADGYDEALLLDTE 190

Query: 176 GFLSEASASNVWVVKDGKISAPPKDNLILEGIRYGLMEELCAEQGIALESRRITREEVLA 235
           G++SE S  NV++VK+GKI  P   +  L+GI    +  +  + GI +  +RITR+E+  
Sbjct: 191 GYVSEGSGENVFIVKNGKIYTPDLASC-LDGITRDAVLTMARDLGIEVIEKRITRDEMYC 249

Query: 236 ADELMISSASKEVLPVVTLDGQPVGSGRPGPV 267
           ADE   +  + E+ P+  LD + +GSG  GPV
Sbjct: 250 ADEAFFTGTAAEITPIRELDRRVIGSGARGPV 281


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 849,891
Number of extensions: 34047
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 2
Length of query: 282
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 198
Effective length of database: 1,222,130
Effective search space: 241981740
Effective search space used: 241981740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)