BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0502.p (306 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314051|ref|YP_003778143.1| transcription regulator protein... 616 e-178 gi|300313122|ref|YP_003777214.1| transcription regulator protein... 188 5e-49 gi|300309577|ref|YP_003773669.1| transcription regulator protein... 152 4e-38 gi|300310443|ref|YP_003774535.1| LysR family transcription regul... 151 6e-38 gi|300312894|ref|YP_003776986.1| LysR family transcription regul... 140 1e-34 >gi|300314051|ref|YP_003778143.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 616 bits (1588), Expect = e-178, Method: Compositional matrix adjust. Identities = 305/306 (99%), Positives = 305/306 (99%) Query: 1 MADLRKLPNLAALRAFDAAARYECFSRAAEEVHVTPGAISHQVRALEEDLGLQLFLRHGK 60 MADLRKLPNLAALRAFDAAARYECFSRAAEEVHVTPGAISHQVRALEEDLGLQLFLRHGK Sbjct: 1 MADLRKLPNLAALRAFDAAARYECFSRAAEEVHVTPGAISHQVRALEEDLGLQLFLRHGK 60 Query: 61 RISITETGQRFAATIRKSLSEIALAAEHLRSQNRQQRLVISTTPSFASRWLAPRLWRFID 120 RISITETGQRFAATIRKSLSEIALAAEHLRSQNRQQRLVISTTPSFASRWLAPRLWRFID Sbjct: 61 RISITETGQRFAATIRKSLSEIALAAEHLRSQNRQQRLVISTTPSFASRWLAPRLWRFID 120 Query: 121 AHPELEVVLQSAAHLNDLRLDGIDVGLRFGRGNYSGLVSEKLSDDYYYPVAAPGYRGKRS 180 AHPELEVVLQSAAHLNDLRLDGIDVGLRFGRGNYSGLVSEKLSDDYYYPVAAPGYRGKRS Sbjct: 121 AHPELEVVLQSAAHLNDLRLDGIDVGLRFGRGNYSGLVSEKLSDDYYYPVAAPGYRGKRS 180 Query: 181 KKLARPADLAHCSLLRVDSRESWQPWLAEAGLELPEPTGGLLVEDSSLTLRQAAEGKGVA 240 KKLARPADLAHCSLLRVDSRESWQPWLAEAGLELPEPTGGLLVEDSSLTLRQAAEGKGVA Sbjct: 181 KKLARPADLAHCSLLRVDSRESWQPWLAEAGLELPEPTGGLLVEDSSLTLRQAAEGKGVA 240 Query: 241 LARHVIASQEISTGELVRLFDVVVPSEDAHYFVHLPEGLEKPGVAAFKEWIFEEMRLFHA 300 LARHVIASQEISTGELVRLFDVVVPSEDAHYFVHLPE LEKPGVAAFKEWIFEEMRLFHA Sbjct: 241 LARHVIASQEISTGELVRLFDVVVPSEDAHYFVHLPEALEKPGVAAFKEWIFEEMRLFHA 300 Query: 301 SAAWPG 306 SAAWPG Sbjct: 301 SAAWPG 306 >gi|300313122|ref|YP_003777214.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 296 Score = 188 bits (477), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 112/293 (38%), Positives = 165/293 (56%), Gaps = 4/293 (1%) Query: 6 KLPNLAALRAFDAAARYECFSRAAEEVHVTPGAISHQVRALEEDLGLQLFLRHGKRISIT 65 +LP + AL AF+AAAR+ F+ AAEE+ +TP A+SH++R LEE +G +LF R G+ I ++ Sbjct: 4 RLPPVHALSAFEAAARHNSFAIAAEELCITPSALSHRIRLLEEFVGERLFYRDGRSIGLS 63 Query: 66 ETGQRFAATIRKSLSEIALAAEHLRSQNRQQRLVISTTPSFASRWLAPRLWRFIDAHPEL 125 E G+R+ +R +L + R+ Q ++ + P+FA L PR+ F HPE+ Sbjct: 64 EFGRRYLDVVRSALRTLTDFPMPHRNAAVQPKIKVMLPPTFARHLLMPRIADFTQRHPEI 123 Query: 126 EVVLQSAAHLNDLRLDGIDVGLRFGRGNYSGLVSEKLSDDYYYPVAAPGYRGKRSKKLAR 185 V L + L DL L DV +RFG GNY +++EKL ++ + VA+P Y K + Sbjct: 124 VVELYLSVPLYDLSLSESDVEIRFGAGNYPNIITEKLFEEPAFAVASPAYL-KTLPPMKS 182 Query: 186 PADLAHCSLLRVDSRESWQPWLAEAGL-ELPEPTGGLLVEDSSLTLRQAAEGKGVALARH 244 PADL +LLR + E WQPW AGL + EP+ GL V+D L L G GV L R Sbjct: 183 PADLKQATLLR-SALEPWQPWFEAAGLKDWVEPSAGLRVDDLGLLLEAVRHGYGVGLTRQ 241 Query: 245 VIASQEISTGELVRLFDVVVPSEDAHYFVHLPEGL-EKPGVAAFKEWIFEEMR 296 A + ++ GE+V LFD+ + + Y+V + E+P V F W+ R Sbjct: 242 HFAEELLARGEIVELFDIRLRTPPHAYYVVYERAVRERPEVDTFISWMQNAFR 294 >gi|300309577|ref|YP_003773669.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 301 Score = 152 bits (383), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 104/294 (35%), Positives = 154/294 (52%), Gaps = 10/294 (3%) Query: 7 LPNLAALRAFDAAARYECFSRAAEEVHVTPGAISHQVRALEEDLGLQLFLRHGKRISITE 66 LP L +L AF+AA R+ F+RAA E+H+T AIS Q+ LE LG +LFLR + + +T Sbjct: 6 LPPLPSLIAFEAAMRHGSFTRAAAELHLTQSAISRQIAQLERFLGKKLFLREPRALRLTV 65 Query: 67 TGQRFAATIRKSLSEIALAAEHLRSQNRQQRLVISTTPSFASRWLAPRLWRFIDAHPELE 126 +GQR+AA +++ L + A A E + + Q L ++ + A WL PRL RF HP+ Sbjct: 66 SGQRYAALVQRLLVDCAEATEDIMKRKGHQELTVACSQGVAVLWLTPRLARFRARHPDCH 125 Query: 127 VVLQSAAHLNDLRLDGIDVGLRFGR-GNYSGLVSEKLSDDYYYPVAAPGYRGKRSKKLAR 185 + L L L D+G+ F R G +GL + +L D+ +PV +PGY R L Sbjct: 126 LRLVVNDSLAQLSETDFDMGIYFLRDGPPAGLAARRLYDEEVFPVCSPGYLDGR---LLA 182 Query: 186 PADLAHCSLLRVDSRE----SWQPWLAEAGLELPEPTGGLLVEDSSLTLRQAAEGKGVAL 241 P DL H +LL ++ + SWQ W+A G+ +L + L+ A EG+GV L Sbjct: 183 PEDLRHQTLLTLEDGQRQWMSWQNWMAHNGMPDVRIEHQILSNQYPVLLQLAMEGQGVVL 242 Query: 242 A-RHVIASQEISTGELVRLFDVVVPSEDAHYFVHLPEGLEKPGVAAFKEWIFEE 294 A RH+I + + G LVR +Y V + +E AF+ W+ E Sbjct: 243 AWRHMIDAC-MEQGLLVRACQASASLGGGYYAVWPRDRIEHAAARAFRSWLVAE 295 >gi|300310443|ref|YP_003774535.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 295 Score = 151 bits (381), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 104/297 (35%), Positives = 161/297 (54%), Gaps = 10/297 (3%) Query: 1 MADLRKLPNLAALRAFDAAARYECFSRAAEEVHVTPGAISHQVRALEEDLGLQLFLRHGK 60 MA L LPNL +AF+A AR + F+ AA E+H+T A+SHQV LE LG++LF R Sbjct: 1 MAVLPPLPNL---QAFEAVARRKSFALAAAELHLTASAVSHQVARLESYLGIRLFERSAH 57 Query: 61 RISITETGQRFAATIRKSLSEIALAAEHLRSQNRQQRLVISTTPSFASRWLAPRLWRFID 120 + IT G+ + A I+ ++S I A+ +R Q L I + PS AS WL RL F Sbjct: 58 GVRITTAGEAYLARIQGAISAITAASMDVR-QGVSNTLYIHSAPSIASLWLMARLNDFAR 116 Query: 121 AHPELEVVLQSAAHLNDLRLDGIDVGLRFGRGNYSGLVSEKLSDDYYYPVAAPGYRGKRS 180 ++PE+ L +A ++ L +D+ +R+G N+ GLV E L ++ P+A+P + R Sbjct: 117 SYPEITFNLSAAHSQSNFELGEVDIDIRYGIPNWPGLVVEPLFEERIVPLASPAF--IRE 174 Query: 181 KKLARPADLAHCSLLRVD-SRESWQPWLAE-AGLELPEPTGGLLVEDSSLTLRQAAEGKG 238 +L +PADL L+R + S W W E A + PE + + + ++L A +G G Sbjct: 175 YRLRKPADLLGVKLIRSNVSVVQWADWFGEFADVRAPE-QFAVRFDRAQMSLDAATQGLG 233 Query: 239 VALARHVIASQEISTGELVRLFDVV-VPSEDAHYFVHLPEGLEKPGVAAFKEWIFEE 294 VAL +A++ + +L +F + AH+ V+ +P VAAF EW+ E+ Sbjct: 234 VALESATVAARHLEEKKLKPIFGLERAIKVKAHFAVYPAHHARRPAVAAFLEWLREQ 290 >gi|300312894|ref|YP_003776986.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 140 bits (353), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 100/301 (33%), Positives = 150/301 (49%), Gaps = 23/301 (7%) Query: 5 RKLPNLAALRAFDAAARYECFSRAAEEVHVTPGAISHQVRALEEDLGLQLFLRHGKRISI 64 R++P+ ++L AF+AAAR+ F+RAAEE+ +T GAIS Q+ LE LG+ LF R G R+ + Sbjct: 3 RRIPSNSSLMAFEAAARHGSFARAAEELALTEGAISRQISRLEGFLGVTLFERIGNRVRL 62 Query: 65 TETGQRFAATIRKSLSEIALAAEHLRSQNRQ-QRLVISTTPSFASRWLAPRLWRFIDAHP 123 GQR+A+ +R++L + ++HL SQ L I+ +P+FA RWL PRL RF HP Sbjct: 63 LPHGQRYASHVRETLERLDRDSQHLMSQPPNGASLDIAVSPTFAMRWLIPRLPRFAALHP 122 Query: 124 ELEVVLQSAAHLNDLRLDGIDVGLRFGRGNYSGLVSEKLSDDYYYPVAAPGYRGKRSKKL 183 + V L L G+D + F ++G+ + L D+ PV P S Sbjct: 123 HITVHLSERMEPFLLPGSGLDAAIHFLHPAWTGMQTYSLLDEVLVPVCHPALVAGTS--- 179 Query: 184 ARPADLAHCSLLRVDSRESWQPWLAEAGLELPEPTGGLLVEDSSLTLRQAAEGKGVALAR 243 PA A L R + ++WQ + A+ G+ L G + + + A G GVAL Sbjct: 180 GVPALDALPRLHRRQNHDAWQRYAAQTGISLSHSAQGPRYDLHGMLIEAALAGLGVALVP 239 Query: 244 HVIASQEISTGELV----------RLFDVVVPSEDAHYFVHLPEGLEKPGVAAFKEWIFE 293 + E++ G LV + F +V+P P L + AF +WI E Sbjct: 240 RLYVETELAQGRLVAPWPQDSRISKTFCLVLPE---------PLQLGSEPLKAFAQWILE 290 Query: 294 E 294 E Sbjct: 291 E 291 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 913,790 Number of extensions: 35855 Number of successful extensions: 250 Number of sequences better than 1.0e-08: 51 Number of HSP's gapped: 215 Number of HSP's successfully gapped: 51 Length of query: 306 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 221 Effective length of database: 1,217,395 Effective search space: 269044295 Effective search space used: 269044295 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)