BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0491.p (1310 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314042|ref|YP_003778134.1| signal transduction protein con... 1469 0.0 gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodies... 497 e-141 gi|300311871|ref|YP_003775963.1| EAL domain-containing protein [... 434 e-122 gi|300311453|ref|YP_003775545.1| signal transduction containing ... 401 e-112 gi|300312026|ref|YP_003776118.1| signal transduction protein con... 394 e-110 >gi|300314042|ref|YP_003778134.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 948 Score = 1469 bits (3804), Expect = 0.0, Method: Compositional matrix adjust. Identities = 725/734 (98%), Positives = 725/734 (98%), Gaps = 3/734 (0%) Query: 580 VAPPPQ-ARRALLVGDTSAVLELNGLVRKILDSAGLMADHDIGLRIYVGAQAEGRNLVYR 638 V P Q ARRALLVGDTSAVLELNGLVRKILDSAGLMADHDIGLRIYVGAQAEGRNLVYR Sbjct: 215 VQPTDQLARRALLVGDTSAVLELNGLVRKILDSAGLMADHDIGLRIYVGAQAEGRNLVYR 274 Query: 639 HDSAPQEAHWLDHLLKPGTLFRHPSTTVSSFDIAGQTWHLEISVPPRSLFADHYGSLLIL 698 HDSAPQEAHWLDHLLKPGTLFRHPSTTVSSFDIAGQTWHLEISVPPRSLFADHYGSLLIL Sbjct: 275 HDSAPQEAHWLDHLLKPGTLFRHPSTTVSSFDIAGQTWHLEISVPPRSLFADHYGSLLIL 334 Query: 699 LVGVIASLLGAAYMRALSMRSHRIQQLVEERTAELRTTNALLSDDIKARRLAERALRLRH 758 LVGVIASLLGAAYMRALSMRSHRIQQLVEERTAELRTTNALLSDDIKARRLAERALRLRH Sbjct: 335 LVGVIASLLGAAYMRALSMRSHRIQQLVEERTAELRTTNALLSDDIKARRLAERALRLRH 394 Query: 759 QAIEASANAILILSAQEPDYTIEYVNPAFARITGYSSTEAVGKSIRFLEGRDSDPEGFET 818 QAIEASANAILILSAQEPDYTIEYVNPAFARITGYSSTEAVGKSIRFLEGRDSDPEGFET Sbjct: 395 QAIEASANAILILSAQEPDYTIEYVNPAFARITGYSSTEAVGKSIRFLEGRDSDPEGFET 454 Query: 819 VWIAMREQREHNVVLRNYHKDGSELWNDFYIAPVRDESGEVTHFVAALYDITSMKRYEAE 878 VWIAMREQREHNVVLRNYHKDGSELWNDFYIAPVRDESGEVTHFVAALYDITSMKRYEAE Sbjct: 455 VWIAMREQREHNVVLRNYHKDGSELWNDFYIAPVRDESGEVTHFVAALYDITSMKRYEAE 514 Query: 879 LEFQASRDTLTGLINRHMLRHHLEQAIGVAERQKQALWVVFVDLDRFKFVNDTLGHKAGD 938 LEFQASRDTLTGLINRHMLRHHLEQAIGVAERQKQALWVVFVDLDRFKFVNDTLGHKAGD Sbjct: 515 LEFQASRDTLTGLINRHMLRHHLEQAIGVAERQKQALWVVFVDLDRFKFVNDTLGHKAGD 574 Query: 939 TLLRTVARARR--VREADTVARLGGDEFIMILPEQDELTLDTRSLQRIMDAVAAPVTLGG 996 TLLRTVA R VREADTVARLGGDEFIMILPEQDELTLDTRSLQRIMDAVAAPVTLGG Sbjct: 575 TLLRTVAGRLRAAVREADTVARLGGDEFIMILPEQDELTLDTRSLQRIMDAVAAPVTLGG 634 Query: 997 HTLFMTCSVGVACYPNDGTDGETLIKHADIAMYRGKQTGRNNFQFYTPAMNEQALERLRI 1056 HTLFMTCSVGVACYPNDGTDGETLIKHADIAMYRGKQTGRNNFQFYTPAMNEQALERLRI Sbjct: 635 HTLFMTCSVGVACYPNDGTDGETLIKHADIAMYRGKQTGRNNFQFYTPAMNEQALERLRI 694 Query: 1057 EGDLRNALDHGEFLLHYQPKVDLASGRVIGSEALIRWQHPQLGMVSPARFIGLAEETGLI 1116 EGDLRNALDHGEFLLHYQPKVDLASGRVIGSEALIRWQHPQLGMVSPARFIGLAEETGLI Sbjct: 695 EGDLRNALDHGEFLLHYQPKVDLASGRVIGSEALIRWQHPQLGMVSPARFIGLAEETGLI 754 Query: 1117 LPIGAWVLRAACTQCRQWQLGGYADISVSVNLSVGQFLQKDLVSSIADVLEDTGLPPESL 1176 LPIGAWVLRAACTQCRQWQLGGYADISVSVNLSVGQFLQKDLVSSIADVLEDTGLPPESL Sbjct: 755 LPIGAWVLRAACTQCRQWQLGGYADISVSVNLSVGQFLQKDLVSSIADVLEDTGLPPESL 814 Query: 1177 ELELTESLMMTDVEHAIGILAGLKKLGVRLSIDDFGTGYSSLAYLKRFPIDVLKIDRSFV 1236 ELELTESLMMTDVEHAIGILAGLKKLGVRLSIDDFGTGYSSLAYLKRFPIDVLKIDRSFV Sbjct: 815 ELELTESLMMTDVEHAIGILAGLKKLGVRLSIDDFGTGYSSLAYLKRFPIDVLKIDRSFV 874 Query: 1237 RDITIDADDAAITASIISLARHLKLRVIAEGVETDEQLDYLRHYGCDEIQGYLFSPPVPA 1296 RDITIDADDAAITASIISLARHLKLRVIAEGVETDEQLDYLRHYGCDEIQGYLFSPPVPA Sbjct: 875 RDITIDADDAAITASIISLARHLKLRVIAEGVETDEQLDYLRHYGCDEIQGYLFSPPVPA 934 Query: 1297 DKFEQILRQDRVMT 1310 DKFEQILRQDRVMT Sbjct: 935 DKFEQILRQDRVMT 948 Score = 1181 bits (3054), Expect = 0.0, Method: Compositional matrix adjust. Identities = 587/599 (97%), Positives = 589/599 (98%), Gaps = 2/599 (0%) Query: 1 MQRVINKLGATLSASLTLMLGLCATATVFVATSHLEEDAVSLDFERRAGLRAFTIQRGLE 60 MQRVINKLGATLSASLTLMLGLCATATVFVATSHLEEDAVSLDFERRAGLRAFTIQRGLE Sbjct: 1 MQRVINKLGATLSASLTLMLGLCATATVFVATSHLEEDAVSLDFERRAGLRAFTIQRGLE 60 Query: 61 EAVQVQSVVNHFYATVGDPTRDQFENFTRPLLERYPYVRAFSVQRFVSDEDRPVFEALRQ 120 EAVQVQSVVNHFYATVGDPTRDQFENFTRPLLERYPYVRAFSVQRFVSDEDRPVFEALRQ Sbjct: 61 EAVQVQSVVNHFYATVGDPTRDQFENFTRPLLERYPYVRAFSVQRFVSDEDRPVFEALRQ 120 Query: 121 GARPGFQITALAEGKVEPVPAPQQPSYLVVDFIEPVPGNEAALGLDVSRNAEIMGALGAA 180 GARPGFQITALAEGKVEPVPAPQQPSYLVVDFIEPVPGNEAALGLDVSRNAEIMGALGAA Sbjct: 121 GARPGFQITALAEGKVEPVPAPQQPSYLVVDFIEPVPGNEAALGLDVSRNAEIMGALGAA 180 Query: 181 LASGRPASTPPLRLAQFGPDERGLLVIQPVYRGGVQPTDQLARRALLVGDTSAVLELNGL 240 LASGRPASTPPLRLAQFGPDERGLLVIQPVYRGGVQPTDQLARRALLVGDTSAVLELNGL Sbjct: 181 LASGRPASTPPLRLAQFGPDERGLLVIQPVYRGGVQPTDQLARRALLVGDTSAVLELNGL 240 Query: 241 VRKILDSAGLMADHDIGLRIYVGAQAEGRNLVYRHDSAPQEAHWLDHLLKPGTLFRHPST 300 VRKILDSAGLMADHDIGLRIYVGAQAEGRNLVYRHDSAPQEAHWLDHLLKPGTLFRHPST Sbjct: 241 VRKILDSAGLMADHDIGLRIYVGAQAEGRNLVYRHDSAPQEAHWLDHLLKPGTLFRHPST 300 Query: 301 TVSSFDIAGQTWHLEISVPPRSLFADHYGSLLILLVGVIASLLGAAYMRALSMRSHRIQQ 360 TVSSFDIAGQTWHLEISVPPRSLFADHYGSLLILLVGVIASLLGAAYMRALSMRSHRIQQ Sbjct: 301 TVSSFDIAGQTWHLEISVPPRSLFADHYGSLLILLVGVIASLLGAAYMRALSMRSHRIQQ 360 Query: 361 LVEERTAELRTTNALLSDDIKARRLAERALRLRHQAIEASANAILILSAQEPDYTIEYVN 420 LVEERTAELRTTNALLSDDIKARRLAERALRLRHQAIEASANAILILSAQEPDYTIEYVN Sbjct: 361 LVEERTAELRTTNALLSDDIKARRLAERALRLRHQAIEASANAILILSAQEPDYTIEYVN 420 Query: 421 PAFARITGYSSTEAVGKSIRFLEGRDSDPEGFETVWIAMREQREHNVVLRNYHKDGSELW 480 PAFARITGYSSTEAVGKSIRFLEGRDSDPEGFETVWIAMREQREHNVVLRNYHKDGSELW Sbjct: 421 PAFARITGYSSTEAVGKSIRFLEGRDSDPEGFETVWIAMREQREHNVVLRNYHKDGSELW 480 Query: 481 NDFYIAPVRDESGEVTHFVAALYDITSMKRYEAELEFQASRDTLTGLINRHMLRHHLEQA 540 NDFYIAPVRDESGEVTHFVAALYDITSMKRYEAELEFQASRDTLTGLINRHMLRHHLEQA Sbjct: 481 NDFYIAPVRDESGEVTHFVAALYDITSMKRYEAELEFQASRDTLTGLINRHMLRHHLEQA 540 Query: 541 IGVAERQKQALWVVFVDLDRFKFVNDTLGHKAGDTLLRTVAPPPQARRALLVGDTSAVL 599 IGVAERQKQALWVVFVDLDRFKFVNDTLGHKAGDTLLRTVA + R A+ DT A L Sbjct: 541 IGVAERQKQALWVVFVDLDRFKFVNDTLGHKAGDTLLRTVA--GRLRAAVREADTVARL 597 >gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domains protein [Herbaspirillum seropedicae SmR1] Length = 701 Score = 497 bits (1280), Expect = e-141, Method: Compositional matrix adjust. Identities = 282/566 (49%), Positives = 366/566 (64%), Gaps = 13/566 (2%) Query: 743 DIKARRLAERALR---LRHQAIEASANAILILSAQEPDYTIEYVNPAFARITGYSSTEAV 799 D+ R+ A +AL+ R+++I NAI + PD T VNPA ARI GY S E + Sbjct: 123 DVTERKEAAQALQEAERRYRSI--FENAIEGVFQTTPDGTYIAVNPALARIYGYHSPEDL 180 Query: 800 GKSIRFLEGR-DSDPEGFETVWIAMREQRE-HNVVLRNYHKDGSELWNDFYIAPVRDESG 857 +R + + +PE + M EQ N R Y +DG +W V DE+G Sbjct: 181 IVGLRDISHQLYVEPERRQEFMRLMEEQGSVSNFESRVYRRDGEIIWISENARAVYDEAG 240 Query: 858 EVTHFVAALYDITSMKRYEAELEFQASRDTLTGLINRHMLRHHLEQAIGVAERQKQALWV 917 +++ + + IT K +EAE+ QA+ D LTGL NR+ML HL++A+ VA RQK AL Sbjct: 241 KLSCYEGTVEAITERKAHEAEMRHQATHDALTGLPNRNMLHEHLQRALRVA-RQKGALTA 299 Query: 918 V-FVDLDRFKFVNDTLGHKAGDTLLRTVARARR--VREADTVARLGGDEFIMILPEQDEL 974 V FVDLD+FKF+ND+LGH+ GD LL+TVA+ + +READ VAR GGDEF+++L Q E Sbjct: 300 VAFVDLDQFKFINDSLGHQVGDELLKTVAQRLQACLREADMVARQGGDEFVLVLQNQTEG 359 Query: 975 TLD-TRSLQRIMDAVAAPVTLGGHTLFMTCSVGVACYPNDGTDGETLIKHADIAMYRGKQ 1033 +QRI+ AVA P G +T S+GV+ YP DG D E+L+KHAD AMYR K+ Sbjct: 360 EAGIAEVMQRILAAVARPWQAGDREFQVTASIGVSRYPADGKDVESLLKHADSAMYRAKE 419 Query: 1034 TGRNNFQFYTPAMNEQALERLRIEGDLRNALDHGEFLLHYQPKVDLASGRVIGSEALIRW 1093 GRNNFQF+ P M+ Q RL + +LR ALD EF L+YQPK+ L GR+IG+EALIRW Sbjct: 420 QGRNNFQFFAPWMDSQVSNRLEMLINLRRALDQDEFKLYYQPKLSLQDGRLIGAEALIRW 479 Query: 1094 QHPQLGMVSPARFIGLAEETGLILPIGAWVLRAACTQCRQWQLGGYADISVSVNLSVGQF 1153 + PQ GMV P RFI AEE GLI+PIG WVLR AC Q + WQ G I V+VNLS Q Sbjct: 480 ESPQQGMVPPDRFIPFAEEAGLIVPIGEWVLRTACRQNQAWQQAGLPPIPVAVNLSPRQ- 538 Query: 1154 LQKDLVSSIADVLEDTGLPPESLELELTESLMMTDVEHAIGILAGLKKLGVRLSIDDFGT 1213 L + L +A VL +GL LELE+TE+++M D E ++ L LK+LG+++S+DDFGT Sbjct: 539 LNQSLPDFVAGVLAQSGLAASWLELEITENVVMKDAEKSVATLHALKRLGLQISVDDFGT 598 Query: 1214 GYSSLAYLKRFPIDVLKIDRSFVRDITIDADDAAITASIISLARHLKLRVIAEGVETDEQ 1273 GYSSL+YL+RFP+D LKID+SFVRDI DAD AAI +IISLA L LRVIAEGVE +EQ Sbjct: 599 GYSSLSYLRRFPVDALKIDKSFVRDIVRDADSAAIVKAIISLAHILNLRVIAEGVEDEEQ 658 Query: 1274 LDYLRHYGCDEIQGYLFSPPVPADKF 1299 +L+ CDE+QGY F P+ F Sbjct: 659 HAFLKENACDEVQGYYFGKPMEVAVF 684 Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 90/214 (42%), Positives = 124/214 (57%), Gaps = 9/214 (4%) Query: 379 DIKARRLAERALR---LRHQAIEASANAILILSAQEPDYTIEYVNPAFARITGYSSTEAV 435 D+ R+ A +AL+ R+++I NAI + PD T VNPA ARI GY S E + Sbjct: 123 DVTERKEAAQALQEAERRYRSI--FENAIEGVFQTTPDGTYIAVNPALARIYGYHSPEDL 180 Query: 436 GKSIRFLEGR-DSDPEGFETVWIAMREQRE-HNVVLRNYHKDGSELWNDFYIAPVRDESG 493 +R + + +PE + M EQ N R Y +DG +W V DE+G Sbjct: 181 IVGLRDISHQLYVEPERRQEFMRLMEEQGSVSNFESRVYRRDGEIIWISENARAVYDEAG 240 Query: 494 EVTHFVAALYDITSMKRYEAELEFQASRDTLTGLINRHMLRHHLEQAIGVAERQKQALWV 553 +++ + + IT K +EAE+ QA+ D LTGL NR+ML HL++A+ VA RQK AL Sbjct: 241 KLSCYEGTVEAITERKAHEAEMRHQATHDALTGLPNRNMLHEHLQRALRVA-RQKGALTA 299 Query: 554 V-FVDLDRFKFVNDTLGHKAGDTLLRTVAPPPQA 586 V FVDLD+FKF+ND+LGH+ GD LL+TVA QA Sbjct: 300 VAFVDLDQFKFINDSLGHQVGDELLKTVAQRLQA 333 >gi|300311871|ref|YP_003775963.1| EAL domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 1036 Score = 434 bits (1117), Expect = e-122, Method: Compositional matrix adjust. Identities = 254/583 (43%), Positives = 348/583 (59%), Gaps = 33/583 (5%) Query: 741 SDDIKARRLAERALRLRHQAIEASANAILILSAQEPDYTIEYVNPAFARITGYSSTEAVG 800 S DI R+ E LR+ A + S +LI A + I VN AF ITGYS+ E VG Sbjct: 461 SRDITDRKQIEAELRISAVAFD-SREGMLITDA---NSKILRVNKAFTEITGYSAEEIVG 516 Query: 801 KSIRFLEGRDSDPEGFETVWIAMREQREHNVVLRNYHKDGSELWN-----DFY-----IA 850 K L P F+ MRE +R + K E+W+ + Y I+ Sbjct: 517 KHPNLLRSDRHGPAFFQE----MRES------IRRFGKWQGEIWDRRKNGEVYPEWLTIS 566 Query: 851 PVRDESGEVTHFVAALYDITSMKRYEAELEFQASRDTLTGLINRHMLRHHLEQAIGVAER 910 V+++ +VTH+V+ +DI+ K E + A D LT L NR +L L+QAI ++ R Sbjct: 567 AVKNKDQQVTHYVSTHHDISDRKLAEERIRELAFFDALTRLPNRTLLLDRLKQAIALSLR 626 Query: 911 QKQALWVVFVDLDRFKFVNDTLGHKAGDTLLRTVARA--RRVREADTVARLGGDEFIMIL 968 K ++F+DLD FK +NDT+GH+ GDTLL+ VA+ VRE DTVAR+GGDEF+++L Sbjct: 627 TKTCAALLFIDLDHFKTLNDTIGHEKGDTLLKQVAQRLLANVRENDTVARVGGDEFVVVL 686 Query: 969 PEQDELTLD----TRSL-QRIMDAVAAPVTLGGHTLFMTCSVGVACYPNDGTDGETLIKH 1023 +EL + TR++ ++I+ A+ + L T S+G + + L+K Sbjct: 687 EGLNELQQEAATQTRAIGEKILTALGSTYQLDDVEYRTTASIGATVFLGRAASVDELMKQ 746 Query: 1024 ADIAMYRGKQTGRNNFQFYTPAMNEQALERLRIEGDLRNALDHGEFLLHYQPKVDLASGR 1083 AD+AMY+ K+TGRN +F+ PAM LER +E LR A+D + LLHYQP+V + GR Sbjct: 747 ADLAMYKAKETGRNALRFFDPAMQTAVLERATLEAGLRKAIDGNQLLLHYQPQV-VEGGR 805 Query: 1084 VIGSEALIRWQHPQLGMVSPARFIGLAEETGLILPIGAWVLRAACTQCRQWQLG-GYADI 1142 V G+E L+RWQHPQ GMV P FI LAEETGLIL +G WVL AC Q W AD+ Sbjct: 806 VTGAEVLVRWQHPQRGMVPPGDFIPLAEETGLILSLGNWVLETACRQLATWAAQPQMADL 865 Query: 1143 SVSVNLSVGQFLQKDLVSSIADVLEDTGLPPESLELELTESLMMTDVEHAIGILAGLKKL 1202 S++VN+S Q + D V ++ D +E TG P L+LELTESL++ +VE I + LK Sbjct: 866 SIAVNVSAPQLREPDFVQTVLDTIERTGANPRRLKLELTESLLVDNVEDIIQKMFALKAY 925 Query: 1203 GVRLSIDDFGTGYSSLAYLKRFPIDVLKIDRSFVRDITIDADDAAITASIISLARHLKLR 1262 GV S+DDFGTGYSSL+YLKR P++ LKID+SFVRD+ ID +DA+I +I++LA+ L L Sbjct: 926 GVEFSLDDFGTGYSSLSYLKRLPLNQLKIDQSFVRDVLIDPNDASIAKTIVNLAQSLGLG 985 Query: 1263 VIAEGVETDEQLDYLRHYGCDEIQGYLFSPPVPADKFEQILRQ 1305 VIAEGVETD Q +L GC QGY F PV + FE+ ++ Sbjct: 986 VIAEGVETDAQRSFLADAGCHAYQGYFFCRPVTVEAFEKFAQE 1028 Score = 107 bits (266), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 79/215 (36%), Positives = 112/215 (52%), Gaps = 24/215 (11%) Query: 377 SDDIKARRLAERALRLRHQAIEASANAILILSAQEPDYTIEYVNPAFARITGYSSTEAVG 436 S DI R+ E LR+ A + S +LI A + I VN AF ITGYS+ E VG Sbjct: 461 SRDITDRKQIEAELRISAVAFD-SREGMLITDA---NSKILRVNKAFTEITGYSAEEIVG 516 Query: 437 KSIRFLEGRDSDPEGFETVWIAMREQREHNVVLRNYHKDGSELWN-----DFY-----IA 486 K L P F+ MRE +R + K E+W+ + Y I+ Sbjct: 517 KHPNLLRSDRHGPAFFQE----MRES------IRRFGKWQGEIWDRRKNGEVYPEWLTIS 566 Query: 487 PVRDESGEVTHFVAALYDITSMKRYEAELEFQASRDTLTGLINRHMLRHHLEQAIGVAER 546 V+++ +VTH+V+ +DI+ K E + A D LT L NR +L L+QAI ++ R Sbjct: 567 AVKNKDQQVTHYVSTHHDISDRKLAEERIRELAFFDALTRLPNRTLLLDRLKQAIALSLR 626 Query: 547 QKQALWVVFVDLDRFKFVNDTLGHKAGDTLLRTVA 581 K ++F+DLD FK +NDT+GH+ GDTLL+ VA Sbjct: 627 TKTCAALLFIDLDHFKTLNDTIGHEKGDTLLKQVA 661 >gi|300311453|ref|YP_003775545.1| signal transduction containing PAS/GGDEF/EAL domains protein [Herbaspirillum seropedicae SmR1] Length = 683 Score = 401 bits (1031), Expect = e-112, Method: Compositional matrix adjust. Identities = 227/538 (42%), Positives = 327/538 (60%), Gaps = 10/538 (1%) Query: 775 EPDYTIEYVNPAFARITGYSSTEAVGKSIRFLEGRDSDPEGFETVWIAMREQREHNVVLR 834 +P I N ++ GYS+ EA+G+++ FL + + + +++ E + +R Sbjct: 139 DPAGFITSWNRGAEQLFGYSAMEAIGRNVLFLYENEDEEDSLHDLFL---EHGGREMEVR 195 Query: 835 NYHKDGSELWNDFYIAPVRDESGEVTHFVAALYDITSMKRYEAELEFQASRDTLTGLINR 894 K G W ++ +RD++G + L DIT K E + A D LTGL NR Sbjct: 196 RRKKSGEVFWASLSLSVMRDQNGHPIGLIGYLNDITERKNAEKLIHHLAYYDALTGLPNR 255 Query: 895 HMLRHHLEQAIGVAERQKQALWVVFVDLDRFKFVNDTLGHKAGDTLLRTVA-RARR-VRE 952 +L ++QA+ A + V+F+DL+RFK +NDTLGH AGD LL VA R RR +RE Sbjct: 256 TLLTRTVDQALEEARHENLHGCVMFIDLNRFKPINDTLGHVAGDMLLVEVAMRLRRALRE 315 Query: 953 ADTVARLGGDEFIMILPEQDELTLDTRSLQRIMDAVAAPVTLGGHTLFMTCSVGVACYPN 1012 D VARLG DEF + L D+ + Q+++ P + GH L + S+GV+ YP Sbjct: 316 QDVVARLGADEFAVALFGIDKDS-PAYVAQKLLALFDDPFFIDGHELRVGASIGVSLYPE 374 Query: 1013 DGTDGETLIKHADIAMYRGKQTGRNN---FQFYTPAMNEQALERLRIEGDLRNALDHGEF 1069 + TD ETL++ ADIAMYR KQ G NN + Y+ MN L+ LRIE L +A ++ E Sbjct: 375 NATDTETLLRLADIAMYRAKQGGENNEGGYACYSEEMNRNTLDLLRIETGLLHAFEYNEL 434 Query: 1070 LLHYQPKVDLASGRVIGSEALIRWQHPQLGMVSPARFIGLAEETGLILPIGAWVLRAACT 1129 LL+YQPKVD+ + + G+EAL+RWQHP+ G++ P FI +AEETGLI+ + WVL A C Sbjct: 435 LLYYQPKVDMQTLAITGAEALVRWQHPERGLLLPGEFIPIAEETGLIVQLSDWVLDAVCR 494 Query: 1130 QCRQWQLGGYADISVSVNLSVGQFLQKDLVSSIADVLEDTGLPPESLELELTESLMMTDV 1189 Q R W+ G I +++N++ +F + L + LE L E LELE+TES++M Sbjct: 495 QARAWKDAGLPPIRIALNVTAREF-TRSLPDRVGAALERHMLSGEWLELEITESMLMHST 553 Query: 1190 EHAIGILAGLKKLGVRLSIDDFGTGYSSLAYLKRFPIDVLKIDRSFVRDITIDADDAAIT 1249 + I I+ + LG+ +S+DDFGTGYSSL+YLKRFPI+ LKIDRSF I D +D AI Sbjct: 554 DRVISIMEKICGLGITVSLDDFGTGYSSLSYLKRFPINTLKIDRSFTMGIPDDTNDCAIA 613 Query: 1250 ASIISLARHLKLRVIAEGVETDEQLDYLRHYGCDEIQGYLFSPPVPADKFEQILRQDR 1307 ++II +A+ L+ +VIAEGVE ++Q ++LR GC+E+QGY+FS PVPA F +L + R Sbjct: 614 SAIIGIAKQLRHKVIAEGVEDEKQFNFLREAGCNELQGYIFSRPVPAPDFHAMLLEGR 671 Score = 97.1 bits (240), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 64/189 (33%), Positives = 97/189 (51%), Gaps = 5/189 (2%) Query: 411 EPDYTIEYVNPAFARITGYSSTEAVGKSIRFLEGRDSDPEGFETVWIAMREQREHNVVLR 470 +P I N ++ GYS+ EA+G+++ FL + + + +++ E + +R Sbjct: 139 DPAGFITSWNRGAEQLFGYSAMEAIGRNVLFLYENEDEEDSLHDLFL---EHGGREMEVR 195 Query: 471 NYHKDGSELWNDFYIAPVRDESGEVTHFVAALYDITSMKRYEAELEFQASRDTLTGLINR 530 K G W ++ +RD++G + L DIT K E + A D LTGL NR Sbjct: 196 RRKKSGEVFWASLSLSVMRDQNGHPIGLIGYLNDITERKNAEKLIHHLAYYDALTGLPNR 255 Query: 531 HMLRHHLEQAIGVAERQKQALWVVFVDLDRFKFVNDTLGHKAGDTLLRTVAPPPQARRAL 590 +L ++QA+ A + V+F+DL+RFK +NDTLGH AGD LL VA + RRAL Sbjct: 256 TLLTRTVDQALEEARHENLHGCVMFIDLNRFKPINDTLGHVAGDMLLVEVA--MRLRRAL 313 Query: 591 LVGDTSAVL 599 D A L Sbjct: 314 REQDVVARL 322 >gi|300312026|ref|YP_003776118.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 1106 Score = 394 bits (1012), Expect = e-110, Method: Compositional matrix adjust. Identities = 197/442 (44%), Positives = 292/442 (66%), Gaps = 10/442 (2%) Query: 873 KRYEAELEFQASRDTLTGLINRHMLRHHLEQAIGVAERQKQALWVVFVDLDRFKFVNDTL 932 +R + + A D LTGL NR + H+ AI AE + + V+ +DLDRFK +NDT Sbjct: 660 RRADERIRHLAHYDELTGLPNRFLCTQHVSNAITHAEHRNGMVAVILMDLDRFKNINDTF 719 Query: 933 GHKAGDTLLRTVARARR--VREADTVARLGGDEFIMILPEQDELTLDTRSLQRIMDAVAA 990 GH+ G+ +L+ +A+ R +RE D +AR+GGDEFI+++ + D+ Q+++ Sbjct: 720 GHETGEAVLQEIAQRFRNSLRELDILARVGGDEFIVLVDDFDDPVQLGEIAQKLLTEARK 779 Query: 991 PVTLGGHTLFMTCSVGVACYPNDGTDGETLIKHADIAMYRGKQTGRNNFQFYTPAMNEQA 1050 P + G ++ S+G+A YP DG + +TLIK+ADIAMYR K G+++++F++ +N Sbjct: 780 PFIIDGQEAMLSVSIGIATYPGDGDNAQTLIKNADIAMYRAKHHGKDDYRFFSDEINTNT 839 Query: 1051 LERLRIEGDLRNALDHGEFLLHYQPKVDLASGRVIGSEALIRWQHPQLGMVSPARFIGLA 1110 +ER+ +E +LR A++ EF++HYQPK++LA GR++G+EAL+RWQHP G++ P FI LA Sbjct: 840 VERIALEAELRRAIERAEFVVHYQPKIELAEGRIVGAEALVRWQHPLRGLLPPGEFITLA 899 Query: 1111 EETGLILPIGAWVLRAACTQC---RQWQLGGYADISVSVNLSVGQFLQKDLVSSIADVLE 1167 EET LI IG VL AC RQ Q+ +S+NL+ QF + L+ I +V++ Sbjct: 900 EETRLIDQIGLLVLDVACRDIGLMRQQQMTCG---RISINLTGSQFGDERLLDDIKEVVD 956 Query: 1168 DTGLPPESLELELTESLMMTDVEHAIGILAGLKKLGVRLSIDDFGTGYSSLAYLKRFPID 1227 G PP LE E+TES++M + E AI I+ G++ G +SIDDFGTGYSSLAYLKRFP++ Sbjct: 957 RHGTPPSCLEFEITESMVMHNRERAIAIMDGIRAEGFTISIDDFGTGYSSLAYLKRFPVN 1016 Query: 1228 VLKIDRSFVRDITIDADDAAITASIISLARHLKLRVIAEGVETDEQLDYLRHYGCDEIQG 1287 LKID+SF+ DI + + +AI +II+++ L L+V+ EGVET++QL LR +G DE QG Sbjct: 1017 TLKIDKSFINDIPDNPNSSAIVQAIIAMSHALNLKVVTEGVETEKQLQALREFGSDEYQG 1076 Query: 1288 YLFSPPVPADKFEQIL--RQDR 1307 Y FS PVP +F Q+L +QDR Sbjct: 1077 YYFSKPVPYAQFVQLLAGQQDR 1098 Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 44/73 (60%) Query: 509 KRYEAELEFQASRDTLTGLINRHMLRHHLEQAIGVAERQKQALWVVFVDLDRFKFVNDTL 568 +R + + A D LTGL NR + H+ AI AE + + V+ +DLDRFK +NDT Sbjct: 660 RRADERIRHLAHYDELTGLPNRFLCTQHVSNAITHAEHRNGMVAVILMDLDRFKNINDTF 719 Query: 569 GHKAGDTLLRTVA 581 GH+ G+ +L+ +A Sbjct: 720 GHETGEAVLQEIA 732 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,984,128 Number of extensions: 170674 Number of successful extensions: 756 Number of sequences better than 1.0e-08: 47 Number of HSP's gapped: 664 Number of HSP's successfully gapped: 65 Length of query: 1310 Length of database: 1,619,870 Length adjustment: 97 Effective length of query: 1213 Effective length of database: 1,160,575 Effective search space: 1407777475 Effective search space used: 1407777475 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 136 (57.0 bits)