BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0488.p
         (631 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314039|ref|YP_003778131.1| lipoprotein [Herbaspirillum ser...  1218   0.0  

>gi|300314039|ref|YP_003778131.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 625

 Score = 1218 bits (3151), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 619/625 (99%), Positives = 620/625 (99%)

Query: 7   MPARPLQLASSELLAAWRADAAQHQRVLALPPDCLREQQAATVLDLHFALGQNFFATWRA 66
           MPARPLQLASSELLAAWRADAAQHQRVLALPPDCLREQQAATVLDLHFALGQNFFATWRA
Sbjct: 1   MPARPLQLASSELLAAWRADAAQHQRVLALPPDCLREQQAATVLDLHFALGQNFFATWRA 60

Query: 67  FDELRGQGGAQRLHYVAILPHPPAPHELIDDLSYAQALRAAWPLPLPGTHRLLLDEGRIT 126
           FDELRGQGGAQRLHYVAILPHPPAPHELIDDLSYAQALRAAWPLPLPGTHRLLLDEGRIT
Sbjct: 61  FDELRGQGGAQRLHYVAILPHPPAPHELIDDLSYAQALRAAWPLPLPGTHRLLLDEGRIT 120

Query: 127 LTLVWGALEEELARLEAPVDLFYLHAHAQAFDPDAPAWRAPTCKRLARLAWTGAQAVVLG 186
           LTLVWGALEEELARLEAPVDLFYLHAHAQAFDPDAPAW+AP CKRLARLAWTGAQAVVLG
Sbjct: 121 LTLVWGALEEELARLEAPVDLFYLHAHAQAFDPDAPAWQAPACKRLARLAWTGAQAVVLG 180

Query: 187 GAGRDDLQAALRQVGFAGQSREGALHLRYAPGWARPPSHVATRETPLLRYPQANRHAIVI 246
           GAGRDDLQAALRQVGFAGQSREGALHLRYAPGWARPPSHVATRETPLLRYPQANRHAIVI
Sbjct: 181 GAGRDDLQAALRQVGFAGQSREGALHLRYAPGWARPPSHVATRETPLLRYPQANRHAIVI 240

Query: 247 GAGLAGTAAAERLSARGWRIDLIDAGPEPATRASGNHAGLFMPALARDDSPLARLTRAAF 306
           GAGLAGTAAAERLSARGWRIDLIDAGPEPATRASGNHAGLFMPALARDDSPLARLTRAAF
Sbjct: 241 GAGLAGTAAAERLSARGWRIDLIDAGPEPATRASGNHAGLFMPALARDDSPLARLTRAAF 300

Query: 307 LFAAQRWQALGGVGMEEGAAILGECCGILQFGRDAKQAQSFEQGAREWDYPARYARWMSA 366
           LFAAQRWQALGGVGMEEGAAILGECCGILQFGRDAKQAQSFEQGAREWDYPARYARWMSA
Sbjct: 301 LFAAQRWQALGGVGMEEGAAILGECCGILQFGRDAKQAQSFEQGAREWDYPARYARWMSA 360

Query: 367 QETADALGMPTMGGGYFFPEAGWLNPPSVSRRMLAVARQSNLVHSHFGRTVHRLQREGEQ 426
           QETADALGMPTMGGGYFFPEAGWLNPPSV RRMLAVARQSNLVHSHFG TVHRLQREG Q
Sbjct: 361 QETADALGMPTMGGGYFFPEAGWLNPPSVCRRMLAVARQSNLVHSHFGCTVHRLQREGGQ 420

Query: 427 WQALDQAGESIAQAPVVILAAGAQASALPIAAALPLNAVRGQVTHLPAEGFPRLPFALCG 486
           WQALDQAGESIAQAPVVILAAGAQASALPIAAALPLNAVRGQVTHLPAEGFPRLPFALCG
Sbjct: 421 WQALDQAGESIAQAPVVILAAGAQASALPIAAALPLNAVRGQVTHLPAEGFPRLPFALCG 480

Query: 487 DGYLTRAHGGLVCMGATYDRFHDPALRVDSHAENLGRLQHMLPQIATHTHLPPASAPSLQ 546
           DGYLTRAHGGLVCMGATYDRF DPALRVDSHAENLGRLQHMLPQIATHTHLPPASAPSLQ
Sbjct: 481 DGYLTRAHGGLVCMGATYDRFQDPALRVDSHAENLGRLQHMLPQIATHTHLPPASAPSLQ 540

Query: 547 GRVGQRCIAPDRLPLVGALPGQAGLYGLLGYASRGLIWAPLMAELLAAMLEREPLPLPRD 606
           GRVGQRCIAPDRLPLVGALPGQAGLYGLLGYASRGLIWAPLMAELLAAMLEREPLPLPRD
Sbjct: 541 GRVGQRCIAPDRLPLVGALPGQAGLYGLLGYASRGLIWAPLMAELLAAMLEREPLPLPRD 600

Query: 607 LVAALDPARFGTTAASDLELPAELE 631
           LVAALDPARFGTTAASDLELPAELE
Sbjct: 601 LVAALDPARFGTTAASDLELPAELE 625


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,089,455
Number of extensions: 91837
Number of successful extensions: 344
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 345
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 540
Effective length of database: 1,188,985
Effective search space: 642051900
Effective search space used: 642051900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)