BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0487.p
         (326 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314038|ref|YP_003778130.1| hypothetical protein Hsero_4761...   654   0.0  
gi|300311184|ref|YP_003775276.1| acetyltransferase [Herbaspirill...   129   3e-31

>gi|300314038|ref|YP_003778130.1| hypothetical protein Hsero_4761
           [Herbaspirillum seropedicae SmR1]
          Length = 326

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/326 (99%), Positives = 325/326 (99%)

Query: 1   MDFDGLQTPPREQTIRQLRELSRKLVRELGFMRSTLAGSDLAPSAVHAIIEIGLRPGLQA 60
           MDFDGLQTPPREQTIRQLRELSRKLVRELGFMRSTLAGSDLAPSAVHAIIEIGLRPGLQA
Sbjct: 1   MDFDGLQTPPREQTIRQLRELSRKLVRELGFMRSTLAGSDLAPSAVHAIIEIGLRPGLQA 60

Query: 61  RELGEVLYLDKSNTSRQLAKLEALGLVRRSPAPGDGRAFSLTLTEAGQALRKKIDKFATD 120
           RELGEVLYLDKSNTSRQLAKLEALGLVRRSPAPGDGRAFSLTLTEAGQ LRKKIDKFATD
Sbjct: 61  RELGEVLYLDKSNTSRQLAKLEALGLVRRSPAPGDGRAFSLTLTEAGQVLRKKIDKFATD 120

Query: 121 QVSAALRRIMPEDQQGLVRALALYSEALSRDNPNAVAGSARGSAEAPLAQGYQPGCIGDI 180
           QVSAALRRIMPEDQQGLVRALALYSEALSRDNPNAVAGSARGSAEAPLAQGYQPGCIGDI
Sbjct: 121 QVSAALRRIMPEDQQGLVRALALYSEALSRDNPNAVAGSARGSAEAPLAQGYQPGCIGDI 180

Query: 181 ASLHARYYAEAAGFGVYFEHKVASELGAFVQSLPAPGKAIWTHQEHGRTLASIVIDGDVA 240
           ASLHARYYAEAAGFGVYFEHKVASELGAFVQSLPAPGKAIWTHQEHGRTLASIVIDGDVA
Sbjct: 181 ASLHARYYAEAAGFGVYFEHKVASELGAFVQSLPAPGKAIWTHQEHGRTLASIVIDGDVA 240

Query: 241 SGLAHLRWFIVDDSLRGRGVGRRLLEQAMALVDAHHFDCYLWTFQGLDAARHLYLEAGFA 300
           SGLAHLRWFIVDDSLRGRGVGRRLLEQAMALVDAHHFDCYLWTFQGLDAARHLYLEAGFA
Sbjct: 241 SGLAHLRWFIVDDSLRGRGVGRRLLEQAMALVDAHHFDCYLWTFQGLDAARHLYLEAGFA 300

Query: 301 LAEESPGEQWGSRVVEQRYVRPARKR 326
           LAEESPGEQWGSRVVEQRYVRPARKR
Sbjct: 301 LAEESPGEQWGSRVVEQRYVRPARKR 326


>gi|300311184|ref|YP_003775276.1| acetyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 163

 Score =  129 bits (325), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 72/154 (46%), Positives = 87/154 (56%), Gaps = 2/154 (1%)

Query: 168 LAQGYQPGCIGDIASLHARYYAEAAGFGVYFEHKVASELGAFVQSLPAPGKAIWTHQEHG 227
           + +GY PG IG +A LHA YY E   FGVYFE ++A+EL AF+          WT   HG
Sbjct: 6   IRRGYLPGAIGRVAELHAAYYTENWSFGVYFEARIATELAAFMSRYDDARDGFWTATVHG 65

Query: 228 RTLASIVIDGDVASGL-AHLRWFIVDDSLRGRGVGRRLLEQAMALVDAHHF-DCYLWTFQ 285
           R   ++ IDG  A    A LRWFI  + LRGRGVG  LL +A+           YLWTF+
Sbjct: 66  RIEGALTIDGQHAQEQGAWLRWFIASEKLRGRGVGDALLSEAVRCCAERDIASIYLWTFE 125

Query: 286 GLDAARHLYLEAGFALAEESPGEQWGSRVVEQRY 319
           GL AAR LY   GF   EE  G  WG ++ EQRY
Sbjct: 126 GLHAARTLYERHGFVRVEERIGSHWGVKLKEQRY 159


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,054,257
Number of extensions: 43640
Number of successful extensions: 158
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 2
Length of query: 326
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 241
Effective length of database: 1,217,395
Effective search space: 293392195
Effective search space used: 293392195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)