BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0478.p (268 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314030|ref|YP_003778122.1| metal ion ABC transporter perip... 544 e-156 gi|300310325|ref|YP_003774417.1| metal ion ABC transporter perip... 278 4e-76 gi|300311120|ref|YP_003775212.1| metal ion ABC transporter perip... 253 8e-69 gi|300310887|ref|YP_003774979.1| metal ion ABC transporter perip... 198 5e-52 gi|300311637|ref|YP_003775729.1| metal ion ABC transporter perip... 153 2e-38 >gi|300314030|ref|YP_003778122.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 276 Score = 544 bits (1402), Expect = e-156, Method: Compositional matrix adjust. Identities = 264/268 (98%), Positives = 266/268 (99%) Query: 1 LRRLSTLMVSMLASLALNAQAAADQVIRVGVTSGPHAQIFEQARRVFERDNPGYKVKIIE 60 LRRLSTLMVSMLASL LNAQAAADQVIRVGVTSGPHAQIFEQARRVFERDNPGYKVKIIE Sbjct: 9 LRRLSTLMVSMLASLVLNAQAAADQVIRVGVTSGPHAQIFEQARRVFERDNPGYKVKIIE 68 Query: 61 FNDYIQPNAALDAGELDANSYQHRPFLNAQIKTRGYKLYAEGKTMIGPMAIYSHKYRKLE 120 FNDYIQPNAALDAGELDANSYQHRPFLNAQIKTRGYKLYAEGKTMIGPMAIYS KYRKLE Sbjct: 69 FNDYIQPNAALDAGELDANSYQHRPFLNAQIKTRGYKLYAEGKTMIGPMAIYSRKYRKLE 128 Query: 121 DVPVGARIGIPNDPANESRVLLLLQKHGFIKLRAGIDPLTGTNATPIDVSENPKKWKFVE 180 DVPVGARIGIPNDPANESRVLLLLQKHGFIKLRAGIDPLTGTNATPID++ENPKKWKFVE Sbjct: 129 DVPVGARIGIPNDPANESRVLLLLQKHGFIKLRAGIDPLTGTNATPIDITENPKKWKFVE 188 Query: 181 IDAAQLPRTLDDLDASAVNADYAAKAGLNPARDSLVVESGDSPYACLIAVREKDRAQPWL 240 IDAAQLPRTLDDLDASAVNADYAAKAGLNPARDSLVVESGDSPYACLIAVREKDRAQPWL Sbjct: 189 IDAAQLPRTLDDLDASAVNADYAAKAGLNPARDSLVVESGDSPYACLIAVREKDRAQPWL 248 Query: 241 GKLVQAYQSPEVKRYIETEFKGGILAAW 268 GKLVQAYQSPEVKRYIETEFKGGILAAW Sbjct: 249 GKLVQAYQSPEVKRYIETEFKGGILAAW 276 >gi|300310325|ref|YP_003774417.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 278 bits (710), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 140/268 (52%), Positives = 195/268 (72%), Gaps = 7/268 (2%) Query: 2 RRLSTLMVSM-LASLALNAQAAADQVIRVGVTSGPHAQIFEQARRVFERDNPGYKVKIIE 60 R+L + + LA+ ++A A A I++GVT+GPHA+I EQ +++ E+D G ++K+IE Sbjct: 4 RQLIQFIAGLGLAAGLVSAPAFAQDQIKMGVTAGPHAEIMEQVKKLLEKD--GVQMKVIE 61 Query: 61 FNDYIQPNAALDAGELDANSYQHRPFLNAQIKTRGYKLYAEGKTMIGPMAIYSHKYRKLE 120 F DYIQPNAAL AG+LDANSYQH+P+L+AQIK RGYK + G T+ PM +YS K + L Sbjct: 62 FTDYIQPNAALAAGDLDANSYQHQPYLDAQIKDRGYKFVSVGSTITFPMGVYSKKIKSLN 121 Query: 121 DVPVGARIGIPNDPANESRVLLLLQKHGFIKLRAGIDPLTGTNATPIDVSENPKKWKFVE 180 D+ GAR+G+PNDP N R LL+LQ G IKL+A G ATP+D+ ENPKK K VE Sbjct: 122 DLKQGARVGVPNDPTNGGRALLVLQAKGVIKLKAD----AGLKATPLDIVENPKKIKIVE 177 Query: 181 IDAAQLPRTLDDLDASAVNADYAAKAGLNPARDSLVVESGDSPYACLIAVREKDRAQPWL 240 +DAAQLPR+LDD DA+ +N +YA AGL+P +D++ VE+ PYA +IAVR D+ +PW+ Sbjct: 178 LDAAQLPRSLDDFDAAVINGNYAESAGLSPTKDAIAVEASTGPYANVIAVRIADKDKPWV 237 Query: 241 GKLVQAYQSPEVKRYIETEFKGGILAAW 268 KLV+AY SPEVK+++ ++KG ++ +W Sbjct: 238 AKLVKAYHSPEVKKFVLEKYKGSVITSW 265 >gi|300311120|ref|YP_003775212.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 253 bits (647), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 134/268 (50%), Positives = 190/268 (70%), Gaps = 3/268 (1%) Query: 1 LRRLSTLMVSMLASLALNAQAAADQVIRVGVTSGPHAQIFEQARRVFERDNPGYKVKIIE 60 ++RL+ + LA + QA Q I+VG++ G IF+ ++V RD G +++ + Sbjct: 10 IKRLAAIGALSLALVPQLGQAQDKQKIKVGISVGSAEAIFDVVKKVAARD--GLEIQTVV 67 Query: 61 FNDYIQPNAALDAGELDANSYQHRPFLNAQIKTRGYKLYAEGKTMIGPMAIYSHKYRKLE 120 F+DY+QPNAAL AG+LDAN++QHRP+L +QI RGY++ G T+ P+ IYS K+R +E Sbjct: 68 FSDYLQPNAALAAGDLDANAFQHRPYLESQIAARGYRIVPVGLTITAPLGIYSRKFRSVE 127 Query: 121 DVPVGARIGIPNDPANESRVLLLLQKHGFIKLRAGIDPLTGTNATPIDVSENPKKWKFVE 180 +P GA IGI NDP+N +R LLLLQK G I+L+ G+ G NATP+DV ENP+K K VE Sbjct: 128 QLPQGAAIGIQNDPSNGNRALLLLQKAGLIRLKPGVGE-NGVNATPLDVIENPRKLKLVE 186 Query: 181 IDAAQLPRTLDDLDASAVNADYAAKAGLNPARDSLVVESGDSPYACLIAVREKDRAQPWL 240 +DAAQLPR+LDDL A+++N DYA KAGL+ +D++ VE YA +IA R +D+ +PW+ Sbjct: 187 LDAAQLPRSLDDLAAASINNDYAFKAGLSLQKDTIAVEDPRGRYANIIATRAEDKDRPWV 246 Query: 241 GKLVQAYQSPEVKRYIETEFKGGILAAW 268 KLVQAY S EV+++IETEFKG ++ A+ Sbjct: 247 RKLVQAYHSEEVRKFIETEFKGSLVPAF 274 >gi|300310887|ref|YP_003774979.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 198 bits (503), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 102/257 (39%), Positives = 155/257 (60%), Gaps = 7/257 (2%) Query: 13 ASLALNAQAAADQVIRVGVTSGPHAQIFEQARRVFERDNPGYKVKIIEFNDYIQPNAALD 72 A+LA + A A + + T PHA+I E + ++ +VK+ F DY+QP A + Sbjct: 13 AALAFSVGAHAADKLVIAATPVPHAEILEHIKPALAKEGIDLQVKV--FTDYVQPAAQTN 70 Query: 73 AGELDANSYQHRPFLNAQIKTRGYKLYAE-GKTMIGPMAIYSHKYRKLEDVPVGARIGIP 131 ++D N + H+P+L+ K+ + K + P A YS KY+K+ D+P GA I IP Sbjct: 71 EKQVDGNFFLHQPYLDQFKKSHKNDIEVPVAKVHVEPFAAYSQKYKKIADIPNGATIAIP 130 Query: 132 NDPANESRVLLLLQKHGFIKLRAGIDPLTGTNATPIDVSENPKKWKFVEIDAAQLPRTLD 191 NDP+N R LLLL ++G IKL+ T +AT D+ ENPKK KF ++AA LPR L+ Sbjct: 131 NDPSNSGRALLLLARNGLIKLKDN----TNISATQKDIVENPKKLKFRALEAATLPRVLN 186 Query: 192 DLDASAVNADYAAKAGLNPARDSLVVESGDSPYACLIAVREKDRAQPWLGKLVQAYQSPE 251 +D + +N +YA +A LNP +DSL +E +SPYA L+ RE ++ P + KL A SP+ Sbjct: 187 QVDVALINTNYALEAKLNPVKDSLFIEDANSPYANLLVAREDNKDSPAIKKLAAALNSPD 246 Query: 252 VKRYIETEFKGGILAAW 268 VK++IE +++G I+ A+ Sbjct: 247 VKKFIEEKYQGAIVPAF 263 >gi|300311637|ref|YP_003775729.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 153 bits (386), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 93/254 (36%), Positives = 137/254 (53%), Gaps = 10/254 (3%) Query: 3 RLSTLMVSMLASLALNAQAAADQVIRVGVTSGPHAQIFEQARRVFERDNPGYKVKIIEFN 62 + S L+ L L+L A AAD+ +R+GV G + A + E G V+++EF Sbjct: 2 KFSHLVFLSLTVLSLQAAQAADK-LRIGVVPGAYGDSVAVAAK--EAKRQGIDVQVVEFT 58 Query: 63 DYIQPNAALDAGELDANSYQHRPFLNAQIKTRGYKLYAEGKTMIGPMAIYSHKYRKLEDV 122 D+ PN ALDAG+LD N +QH+PFL+ I+ GYKL + G ++ + +YS KY+ L + Sbjct: 59 DWTTPNVALDAGDLDLNYFQHQPFLDNAIQKNGYKLASAGTGILSNVGLYSLKYKSLTAL 118 Query: 123 PVGARIGIPNDPANESRVLLLLQKHGFIKLRAGIDPLTGTNATPIDVSENPKKWKFVEID 182 P GA++GI NDP N+ R LLLLQ G IKL+ P G + D+ +NP+K FVE++ Sbjct: 119 PQGAKVGIANDPVNQGRALLLLQNVGLIKLK----PKVGYLGSIDDIIDNPRKLSFVEVE 174 Query: 183 AAQLPRTLDDLDASAVNADY--AAKAGLNPARDSLVVESGDSPYACLIAVREKDRAQPWL 240 QL R D+D + + AAKA +P+ D+ +A R P + Sbjct: 175 GPQLVRITPDVDLAQGYPHFIVAAKA-FDPSSGLAYSGIEDARFAIQFVTRANRVNDPVV 233 Query: 241 GKLVQAYQSPEVKR 254 K +Q YQ+ R Sbjct: 234 QKFIQIYQNSAAVR 247 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 812,270 Number of extensions: 33292 Number of successful extensions: 93 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 85 Number of HSP's successfully gapped: 5 Length of query: 268 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 184 Effective length of database: 1,222,130 Effective search space: 224871920 Effective search space used: 224871920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)