BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0476.p
         (447 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314028|ref|YP_003778120.1| hypothetical protein Hsero_4751...   847   0.0  

>gi|300314028|ref|YP_003778120.1| hypothetical protein Hsero_4751
           [Herbaspirillum seropedicae SmR1]
          Length = 448

 Score =  847 bits (2189), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/448 (98%), Positives = 443/448 (98%), Gaps = 1/448 (0%)

Query: 1   MNAPKRPSGNPNKANKPNKTGKPNAPKP-AAPRAQAQGPVRDKPKTHVATDASRRRQHNA 59
           MNAPKRPSGNPNKANKPNKTGKPNAPK  AAPRAQAQGPVRDKPKTHVATDASRRRQHNA
Sbjct: 1   MNAPKRPSGNPNKANKPNKTGKPNAPKSTAAPRAQAQGPVRDKPKTHVATDASRRRQHNA 60

Query: 60  HAASASMDEDELRVQQMVALATAVAASAVDRQGRRVGQDELERMVRHALRQRDDDTLYEA 119
           HAASASMDEDELRVQQMVALATAVAASAVDRQGRRVGQDELERMVRHALRQRDDDTLYEA
Sbjct: 61  HAASASMDEDELRVQQMVALATAVAASAVDRQGRRVGQDELERMVRHALRQRDDDTLYEA 120

Query: 120 LEQLRYDDVRGHSFLREVVEESADIVVMRRGEKEMEINAFLIPMLVRTRGGLREEHALAD 179
           LEQLRYDDVRGH FLREVVEESADIVV+RRGEKEMEINAFLIPMLVRTRGGLREE ALAD
Sbjct: 121 LEQLRYDDVRGHGFLREVVEESADIVVLRRGEKEMEINAFLIPMLVRTRGGLREEQALAD 180

Query: 180 GEAFDALRESLQQAGLESPKARVVLVHHLYHPEEINALSFGEVEAMNRDAFASLTDKKVM 239
           GEAFDALRESLQQAGLESPKARVVLVHHLYHPEEINALSFGEVEAMNRDAFASLTDKKVM
Sbjct: 181 GEAFDALRESLQQAGLESPKARVVLVHHLYHPEEINALSFGEVEAMNRDAFASLTDKKVM 240

Query: 240 SVPAIERSMRGWPATTFSADDEALELRFLLGFALKDLDDPFYAVPADEAAADAYFEQRAE 299
           SVPAIERSMRGWPATTFSADDEALELRFLLGFALKDLDDPFYAVPADEAAADAYFEQRAE
Sbjct: 241 SVPAIERSMRGWPATTFSADDEALELRFLLGFALKDLDDPFYAVPADEAAADAYFEQRAE 300

Query: 300 RFRQWSQQITPLMQQCLTGKTGAQAQCQLHFLYQDLLHGAKRTGNAEYRTLQMLSELEQG 359
           RFRQWSQQITPLMQQCLTGKTGAQAQCQLHFLYQDLLHGAKRTGNAEYRTLQMLSELEQG
Sbjct: 301 RFRQWSQQITPLMQQCLTGKTGAQAQCQLHFLYQDLLHGAKRTGNAEYRTLQMLSELEQG 360

Query: 360 LAAAGVEPAQATAVVALEEEGDEMRLLVVLRGTAGMLARSELRLEDDGQDALWEAADALA 419
           LAAAG EPAQATAVVALEEEGDEMRLLVVLRGTAGMLARSELRLEDDGQDALWEAADALA
Sbjct: 361 LAAAGAEPAQATAVVALEEEGDEMRLLVVLRGTAGMLARSELRLEDDGQDALWEAADALA 420

Query: 420 SLGVAGVRLADGFDASGQALRERDFPAH 447
           SLGVAGVRLADGFDASGQALRERDFPAH
Sbjct: 421 SLGVAGVRLADGFDASGQALRERDFPAH 448


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,230,680
Number of extensions: 48244
Number of successful extensions: 203
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 359
Effective length of database: 1,203,190
Effective search space: 431945210
Effective search space used: 431945210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)