BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0472.p
         (221 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314024|ref|YP_003778116.1| flagellar basal body L-ring pro...   442   e-125
gi|300311355|ref|YP_003775447.1| flagellar basal-body L-ring pro...    85   6e-18

>gi|300314024|ref|YP_003778116.1| flagellar basal body L-ring
           protein [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score =  442 bits (1137), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/221 (100%), Positives = 221/221 (100%)

Query: 1   MLIQTRLAGACTLAALLSACNSPAPMVIGPTSVRPAYQVANVENNGAIFRVSSAQLFEEP 60
           MLIQTRLAGACTLAALLSACNSPAPMVIGPTSVRPAYQVANVENNGAIFRVSSAQLFEEP
Sbjct: 1   MLIQTRLAGACTLAALLSACNSPAPMVIGPTSVRPAYQVANVENNGAIFRVSSAQLFEEP 60

Query: 61  TAYNVGDIIKIDISESISSSNKAATNNSRDSSLTQKGPGSGAPLGGLFTQLYDANYSASG 120
           TAYNVGDIIKIDISESISSSNKAATNNSRDSSLTQKGPGSGAPLGGLFTQLYDANYSASG
Sbjct: 61  TAYNVGDIIKIDISESISSSNKAATNNSRDSSLTQKGPGSGAPLGGLFTQLYDANYSASG 120

Query: 121 NNTFKGSGDSSNTNTMSGTLMVSIVEVLPNRNLVVAGEKRIGVNGNINTLRFSGVVRTRD 180
           NNTFKGSGDSSNTNTMSGTLMVSIVEVLPNRNLVVAGEKRIGVNGNINTLRFSGVVRTRD
Sbjct: 121 NNTFKGSGDSSNTNTMSGTLMVSIVEVLPNRNLVVAGEKRIGVNGNINTLRFSGVVRTRD 180

Query: 181 IRGGIVASSNVADARLEQVGGGSIADASTDGNFFRRLLTIW 221
           IRGGIVASSNVADARLEQVGGGSIADASTDGNFFRRLLTIW
Sbjct: 181 IRGGIVASSNVADARLEQVGGGSIADASTDGNFFRRLLTIW 221


>gi|300311355|ref|YP_003775447.1| flagellar basal-body L-ring
           protein [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score = 84.7 bits (208), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/200 (34%), Positives = 112/200 (56%), Gaps = 13/200 (6%)

Query: 1   MLIQTRLAGACTLAALLSACNSPAPMVIGPTSVRPAYQVANVENNGAIFRVSSAQ-LFEE 59
           ML    LAG   +A   +  +S   +V GP S RP         +GAIF+ +  + L E+
Sbjct: 4   MLKWVTLAGILAVAGCTTVPDS---IVAGPKSARPQPASYAPPTSGAIFQGAVYRPLLED 60

Query: 60  PTAYNVGDIIKIDISESISSSNKAATNNSRDSSLTQKGPGSGAPLGGLF-TQLYDANYSA 118
             A  VGD + I I+E  S+   AA++ S+  ++        +P+   F T + +   + 
Sbjct: 61  RRARLVGDTLTIVINEKTSAGKSAASSASKTGAV-------NSPVPTFFGTSIKELTANG 113

Query: 119 SGNNTFKGSGDSSNTNTMSGTLMVSIVEVLPNRNLVVAGEKRIGVNGNINTLRFSGVVRT 178
           S +  F   G ++++NT +GT+ V++VEVLPN NLVVAGEK++ ++  +  +RFSG V  
Sbjct: 114 SSSAKFDDKGATTSSNTFTGTIGVTVVEVLPNGNLVVAGEKQVALDKGVEYVRFSGTVSP 173

Query: 179 RDIR-GGIVASSNVADARLE 197
            +I+ G  V+S+ VADA++E
Sbjct: 174 DNIQTGNTVSSTLVADAKVE 193


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.130    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 616,604
Number of extensions: 23255
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 2
Length of query: 221
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,231,600
Effective search space: 171192400
Effective search space used: 171192400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)