BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0463.p (414 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314019|ref|YP_003778111.1| amino acid deacylase [Herbaspir... 839 0.0 gi|300312510|ref|YP_003776602.1| acetylornithine deacetylase [He... 90 3e-19 gi|300312087|ref|YP_003776179.1| peptidase [Herbaspirillum serop... 87 3e-18 gi|300311475|ref|YP_003775567.1| succinyl-diaminopimelate desucc... 60 2e-10 >gi|300314019|ref|YP_003778111.1| amino acid deacylase [Herbaspirillum seropedicae SmR1] Length = 414 Score = 839 bits (2167), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/414 (99%), Positives = 413/414 (99%) Query: 1 MSKEQLSQRLCAWIDQHFDEEVGVLQQLIRIPTDTPPGNNAPHADAVAELVAGWGWAAEK 60 MSKEQLSQRLCAWIDQHFDEEVGVLQQLIRIPTDTPPGNNAPHADAVAELVAGWGWAAEK Sbjct: 1 MSKEQLSQRLCAWIDQHFDEEVGVLQQLIRIPTDTPPGNNAPHADAVAELVAGWGWAAEK 60 Query: 61 HVVPAQQVADYGMQSITNLIVRRPYGDGGPTVALNAHGDVVPPGEGWTHDPYGGEIADGR 120 HVVPAQQVADYGMQSITNLIVRRPYGDGGPT+ALNAHGDVVPPGEGWTHDPYGGEIADGR Sbjct: 61 HVVPAQQVADYGMQSITNLIVRRPYGDGGPTLALNAHGDVVPPGEGWTHDPYGGEIADGR 120 Query: 121 IYGRAAAVSKSDFASYLFATRALEAVGASLRGGVELHFTYDEEFGGLLGPGWLLEQKLTR 180 IYGRAAAVSKSDFASYLFATRALEAVGASLRGGVELHFTYDEEFGGLLGPGWLLEQKLTR Sbjct: 121 IYGRAAAVSKSDFASYLFATRALEAVGASLRGGVELHFTYDEEFGGLLGPGWLLEQKLTR 180 Query: 181 PDYVLAAGFSYNVVTAHNACLQFEITVHGRATHGSMPETGHDALQAATAILNAIYGALPG 240 PDYVLAAGFSYNVVTAHNACLQFEITVHGRATHGSMPETGHDALQAATAILNAIYGALPG Sbjct: 181 PDYVLAAGFSYNVVTAHNACLQFEITVHGRATHGSMPETGHDALQAATAILNAIYGALPG 240 Query: 241 LKEIRSTIPGITHPTMIVGRIDGGTNTNVVPGKVVLKMDRRMIPEEDPSQVEAGVRKLIE 300 LKEIRS IPGITHPTMIVGRIDGGTNTNVVPGKVVLKMDRRMIPEEDPSQVEAGVRKLIE Sbjct: 241 LKEIRSAIPGITHPTMIVGRIDGGTNTNVVPGKVVLKMDRRMIPEEDPSQVEAGVRKLIE 300 Query: 301 DAVAGLPGIRVEIRRLLLARALRPLPGHEKLVESLLRNAREVMGETLTTNGSALYTDARL 360 DAVAGLPGIRVEIRRLLLARALRPLPGHEKLVESLLRNAREVMGETLTTNGSALYTDARL Sbjct: 301 DAVAGLPGIRVEIRRLLLARALRPLPGHEKLVESLLRNAREVMGETLTTNGSALYTDARL 360 Query: 361 YGEQGIPVVLFGAGPRTLMESNAKQADENLALDDLRKATKVVALMLLDFLGPQG 414 YGEQGIPVVLFGAGPRTLMESNAKQADENLALDDLRKATKVVALMLLDFLGPQG Sbjct: 361 YGEQGIPVVLFGAGPRTLMESNAKQADENLALDDLRKATKVVALMLLDFLGPQG 414 >gi|300312510|ref|YP_003776602.1| acetylornithine deacetylase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 89.7 bits (221), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 92/338 (27%), Positives = 148/338 (43%), Gaps = 44/338 (13%) Query: 86 GDGGPT---VALNAHGDVVP-PGEGWTHDPYGGEIADGRIYGRAAAVSKSDFASYLFATR 141 GD GP + H DVVP G+ W DP+ +ADG+++GR A K A + Sbjct: 70 GDAGPGRFGTVFSGHTDVVPVTGQKWDTDPFVAHVADGKLFGRGACDMKGFIAICMARLP 129 Query: 142 ALEAVGASLRGGVELHFTYDEEFGGLLGPGWL--LEQKLTRPD-YVLAAGFSYNVVTAHN 198 A++ A L + F+YDEE G L L L+Q RP ++ V AH Sbjct: 130 AIDL--ARLHTPLHFSFSYDEEVGCLGVRELLADLQQNDIRPTGVIIGEPTMMQPVIAHK 187 Query: 199 ACLQFEITVHGRATHGSMPETGHDALQ-AATAILNAIYGAL----PGLKEIRSTIPGITH 253 + +VHG A H S P G +++ AA L AL G+++ +P + Sbjct: 188 GKRSYRCSVHGHAAHSSCPHLGINSIDFAAMMQLKIREIALRVRHSGVQDDDFDVP---Y 244 Query: 254 PTMIVGRIDGGTNTNVVPGKVVLKMDRRMIPEEDPSQVEAGVRKLIEDAVAGLPGIRVE- 312 ++ GG N++P K + R +P DP++V V+ E + LP +R++ Sbjct: 245 SSIATTLTSGGNAPNIIPDKAEFVFEHRFLPGIDPAEVFEEVKAYAEQEI--LPQMRIDG 302 Query: 313 IRRLLLARALRPLPG-----HEKLVESLLR-----NAREVMGETLTTNGSALYTDARLYG 362 ++ + L PG + LV S LR AR+V T+ L+G Sbjct: 303 VQGRIEFETLTSYPGMCTPADDPLVTSALRILGSERARKV----------GFGTEGGLFG 352 Query: 363 EQGIPVVLFGAGPRTLMESNAKQADENLALDDLRKATK 400 + G+P V+ G G ++A + +E + L+ L + + Sbjct: 353 QAGMPAVICGPGDI----AHAHKPNEFVTLEQLARCER 386 >gi|300312087|ref|YP_003776179.1| peptidase [Herbaspirillum seropedicae SmR1] Length = 395 Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 126/297 (42%), Gaps = 25/297 (8%) Query: 92 VALNAHGDVVP-PGEGWTHDPYGGEIADGRIYGRAAAVSKSDFASYLFATRAL--EAVGA 148 + L+ H DVVP G+ W DP+ DG +Y R + D ++ AL E + Sbjct: 76 IVLSGHTDVVPVDGQKWDTDPFKLTEKDGALYARGSC----DMKGFIATALALVPEYLAM 131 Query: 149 SLRGGVELHFTYDEEFGGLLGPGWLLEQKLTR----PDYVLAAGFSYNVVTAHNACLQFE 204 + L F++DEE G + P +LE+ + R V+ S NVV AH F Sbjct: 132 PRVKPIHLAFSFDEEIGCIGAP-VMLEEIVKRGIKVDGCVVGEPTSMNVVVAHKGINVFA 190 Query: 205 ITVHGRATHGSMPETGHDALQAATAILNAIYGALPGLKEI--RSTIPGITHPTMIVGRID 262 VHG++ H S+ G +A++ A ++ AI G K + TM +I Sbjct: 191 CKVHGKSAHSSLTPQGCNAIEHAARLICAIRDFADGYKANGPYDQFFDVPFSTMTTNQIR 250 Query: 263 GGTNTNVVPGKVVLKMDRRMIPEEDPSQVEAGVRKLIEDAV-----AGLPGIRVEIRRLL 317 GG N +P + R +P + ++A + K I + + P RVEI Sbjct: 251 GGIAVNTIPELCEFTYEFRNLPGMSVADIQAQIDKYIAEVLLPKMRTEFPDARVEIDNFA 310 Query: 318 LARALRPLPGHEKLVESLLRNAREVMGETLTTNGSALYTDARLYGEQGIPVVLFGAG 374 + AL + + + L+R + T A T+A L+ + GIP ++ G G Sbjct: 311 GSPALEAV--EQAAITELVR----ALTGDRQTRKVAYGTEAGLFQQIGIPTIVCGPG 361 >gi|300311475|ref|YP_003775567.1| succinyl-diaminopimelate desuccinylase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 68/284 (23%), Positives = 114/284 (40%), Gaps = 45/284 (15%) Query: 18 FDEEVGVLQQLIRIPTDTPPGNNAPHADAVAELVAGWGWAAEKHVVPAQQVADYGMQS-- 75 + + + Q+L+ + + TP +AEL+ G+ E +QS Sbjct: 3 MSKTLALTQELMSLSSVTPEDKGC--QARLAELLTPLGFVCET------------IQSGE 48 Query: 76 ITNLIVRRPYGDGGPTVALNAHGDVVPPG--EGWTHDPYGGEIADGRIYGRAAAVSKSDF 133 +TNL R+ G P V H DVVP G E W P+ + +GR+YGR A+ K+ Sbjct: 49 VTNLWARK--GTAQPLVVFAGHTDVVPTGPLEKWQSHPFQPTLREGRLYGRGASDMKTSI 106 Query: 134 ASYLFATRALEAVGASLRGGVELHFTYDEE---FGGLLGPGWLLEQKLTRPDYVL----- 185 A+ + A A +G + T DEE G + L+ + + DY + Sbjct: 107 AAMVVACEEFTAAHPDHKGSIGFLITSDEEGPAIDGTVVVCNALKARGEQLDYCIVGEPT 166 Query: 186 -AAGFSYNVVTAHNACLQFEITVHGRATHGSMPETGHDALQAATAILNAIYGALPGLKEI 244 A + + ++TV G H + P+ N I+ A P L E+ Sbjct: 167 SAKTLGDMIKNGRRGTMSGKLTVKGIQGHIAYPQLAR----------NPIHQAAPALAEL 216 Query: 245 RSTIPGITHPTMI-----VGRIDGGTN-TNVVPGKVVLKMDRRM 282 + + + + I GGT +NV+PG+V++ + R Sbjct: 217 VAEQWDAGNEYYLPTSWQISNIHGGTGASNVIPGEVMIDFNFRF 260 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.137 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,418,191 Number of extensions: 63280 Number of successful extensions: 214 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 209 Number of HSP's successfully gapped: 5 Length of query: 414 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 326 Effective length of database: 1,203,190 Effective search space: 392239940 Effective search space used: 392239940 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)