BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0457.p
         (284 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313173|ref|YP_003777265.1| gluconolactonase [Herbaspirillu...   585   e-168
gi|300310377|ref|YP_003774469.1| gluconolactonase [Herbaspirillu...   145   4e-36

>gi|300313173|ref|YP_003777265.1| gluconolactonase [Herbaspirillum
           seropedicae SmR1]
          Length = 302

 Score =  585 bits (1507), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 282/284 (99%), Positives = 283/284 (99%)

Query: 1   MLLGESPLWHAQEAALYWIDIPGKAVHRLHPESGQHKRWDLPEEPGSIVRHAQGGLVVAI 60
           MLLGESPLWHAQEAALYWIDIPGKAVHRLHPESGQHKRWDLPEEPGSIVRHAQGGLVVAI
Sbjct: 19  MLLGESPLWHAQEAALYWIDIPGKAVHRLHPESGQHKRWDLPEEPGSIVRHAQGGLVVAI 78

Query: 61  RTGMFHLNTDTGALTLLLAAPYDSSRIRFNDGRCDASGRFWCGTIYEPRDRDGGTLYCFE 120
           RTGMFHLNTDTGALTLLLAAPYDSSRIRFNDGRCDASGRFWCGTIYEPRDRDGGTLYCFE
Sbjct: 79  RTGMFHLNTDTGALTLLLAAPYDSSRIRFNDGRCDASGRFWCGTIYEPRDRDGGTLYCFE 138

Query: 121 RNALRDAHHAVVTSNGLAFSPDQRLMYHANTPAHRINLYDYDLATGATSNCRLLRQFDSD 180
           RNALRDAHHAVVTSNGLAFS DQRLMYHANTPAHRINLYDYDLATGATSNCRLLRQFDSD
Sbjct: 139 RNALRDAHHAVVTSNGLAFSSDQRLMYHANTPAHRINLYDYDLATGATSNCRLLRQFDSD 198

Query: 181 KSAPDYGGRPDGAAVDSQGAYWCAMFEGGRVLRLSPQGEILQEIRLPARCPTMVAFGGDD 240
           KSAPDYGGRPDGAAVDSQGAYWCAMFEGGRVLRLSPQGEILQEIRLPARCPTMVAFGGDD
Sbjct: 199 KSAPDYGGRPDGAAVDSQGAYWCAMFEGGRVLRLSPQGEILQEIRLPARCPTMVAFGGDD 258

Query: 241 LRTLYITTGRNGRSPAELAQYPESGCVLAVRVEVPGQLEYSYRP 284
           LRTLYITTGRNGRSPAELAQYPESGCVLAVRV+VPGQLEYSYRP
Sbjct: 259 LRTLYITTGRNGRSPAELAQYPESGCVLAVRVDVPGQLEYSYRP 302


>gi|300310377|ref|YP_003774469.1| gluconolactonase [Herbaspirillum
           seropedicae SmR1]
          Length = 292

 Score =  145 bits (365), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 90/274 (32%), Positives = 137/274 (50%), Gaps = 15/274 (5%)

Query: 3   LGESPLWHAQEAALYWIDIPGKAVHRLHPESGQHKRWDLPEEPGSIVRHAQ-GGLVVAIR 61
           LGE  LW  +  +++W DI    +    P++G  + W +PE        A    L++ + 
Sbjct: 13  LGEGVLWCDRSQSVFWTDIHASRLWNHDPQTGLTRSWGMPERLCCYAFTADPQQLLIGLE 72

Query: 62  TGMFHLNTDTGALTLLLAAPYDSSRIRFNDGRCDASGRFWCGTIYEPRDRDGGTLYCFER 121
           + +   N  TG +  +     D    R NDGRCD  GRF  GT+ E   R    +  F R
Sbjct: 73  SRLAFFNLSTGTIAPICRIEDDLPSTRLNDGRCDRQGRFVFGTLNEDAGR--APIASFYR 130

Query: 122 -----NALRDAHHAVVTSNGLAFSPDQRLMYHANTPAHRINLYDYDLATGATSNCRLLRQ 176
                   R +  ++  SN + FS D +LMYH ++ A +I + DYD A+GA    R+   
Sbjct: 131 LNTDLTLERLSLPSIAISNSICFSLDGKLMYHCDSMAGKIMVCDYDTASGAVGGQRVF-- 188

Query: 177 FDSDKSAPDYGGRPDGAAVDSQGAYWCAMFEGGRVLRLSPQGEILQEIRLPARCPTMVAF 236
             +D + P   G PDG+ +D++G  W A + G RV+R +P G I + + +P   P+ VAF
Sbjct: 189 --ADVAQP---GGPDGSTIDAEGYLWNAQWGGARVVRYAPDGRIDRVVAIPTSQPSCVAF 243

Query: 237 GGDDLRTLYITTGRNGRSPAELAQYPESGCVLAV 270
           GG    TLY+TT   G S  + A  P++G + AV
Sbjct: 244 GGAQFDTLYVTTAHEGMSAEQRAADPQAGALFAV 277


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,008,258
Number of extensions: 45230
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 2
Length of query: 284
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 200
Effective length of database: 1,222,130
Effective search space: 244426000
Effective search space used: 244426000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)