BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0452.p (228 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314013|ref|YP_003778105.1| two component response regulato... 452 e-128 gi|300313818|ref|YP_003777910.1| two component transcription reg... 206 1e-54 gi|300312688|ref|YP_003776780.1| response regulator consisting o... 174 4e-45 gi|300311842|ref|YP_003775934.1| response regulator transcriptio... 161 5e-41 gi|300309981|ref|YP_003774073.1| two component response regulato... 160 1e-40 >gi|300314013|ref|YP_003778105.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 228 Score = 452 bits (1162), Expect = e-128, Method: Compositional matrix adjust. Identities = 228/228 (100%), Positives = 228/228 (100%) Query: 1 MHILLVEDDIDMSRALLRALERRGFQVTHCADGISALSHIKDGIGDLVVLDLNIPGLDGL 60 MHILLVEDDIDMSRALLRALERRGFQVTHCADGISALSHIKDGIGDLVVLDLNIPGLDGL Sbjct: 1 MHILLVEDDIDMSRALLRALERRGFQVTHCADGISALSHIKDGIGDLVVLDLNIPGLDGL 60 Query: 61 HLLQRIRSQDIGTPVIVLTARGAVGDRVVGLNAGADDYLAKPFDLDELDARIRALLRRRT 120 HLLQRIRSQDIGTPVIVLTARGAVGDRVVGLNAGADDYLAKPFDLDELDARIRALLRRRT Sbjct: 61 HLLQRIRSQDIGTPVIVLTARGAVGDRVVGLNAGADDYLAKPFDLDELDARIRALLRRRT 120 Query: 121 NADDGVQRCGRLRFDRGSGAFYCGDDPLELTPREHTLLKALIAKPGHAVTKEKLFRLVFP 180 NADDGVQRCGRLRFDRGSGAFYCGDDPLELTPREHTLLKALIAKPGHAVTKEKLFRLVFP Sbjct: 121 NADDGVQRCGRLRFDRGSGAFYCGDDPLELTPREHTLLKALIAKPGHAVTKEKLFRLVFP 180 Query: 181 MEESTQLEAIEVVVHRVRKKLMETGAEIMTLRGLGYLLRDRQQQGGEG 228 MEESTQLEAIEVVVHRVRKKLMETGAEIMTLRGLGYLLRDRQQQGGEG Sbjct: 181 MEESTQLEAIEVVVHRVRKKLMETGAEIMTLRGLGYLLRDRQQQGGEG 228 >gi|300313818|ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 206 bits (524), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 112/222 (50%), Positives = 150/222 (67%), Gaps = 3/222 (1%) Query: 1 MHILLVEDDIDMSRALLRALERRGFQVTHCADGISALSHIKDGIGDLVVLDLNIPGLDGL 60 M ILLVED I++SR L +A+ V +G A S + LV+LDL +P +DG+ Sbjct: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 Query: 61 HLLQRIRSQDIGTPVIVLTARGAVGDRVVGLNAGADDYLAKPFDLDELDARIRALLRRRT 120 +L+R+R++ TPV++LTARG + DRV GLN GADDYLAKPF+L+EL+AR++ALLRR Sbjct: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 Query: 121 NADDGVQRCGRLRFDRGSGAFYCGDDPLELTPREHTLLKALIAKPGHAVTKEKLFRLVFP 180 N + CG L FD S F G + L LTPREH +L+ALI + GH V KEKLF+ VF Sbjct: 121 NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFT 180 Query: 181 MEESTQLEAIEVVVHRVRKKLMETG---AEIMTLRGLGYLLR 219 +E++ ++AIE+ +HR+RKKL G I TLRGLGYLL+ Sbjct: 181 LEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQ 222 >gi|300312688|ref|YP_003776780.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 174 bits (442), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 98/221 (44%), Positives = 139/221 (62%) Query: 1 MHILLVEDDIDMSRALLRALERRGFQVTHCADGISALSHIKDGIGDLVVLDLNIPGLDGL 60 M +LL+ED+ ++ L + L+ F+V ADG A ++D D+V+LDL +P L G Sbjct: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 Query: 61 HLLQRIRSQDIGTPVIVLTARGAVGDRVVGLNAGADDYLAKPFDLDELDARIRALLRRRT 120 ++L+R+R + G PV++LTA G++ ++V L AGADDYL KPF++ EL ARI+ L+RR+T Sbjct: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 Query: 121 NADDGVQRCGRLRFDRGSGAFYCGDDPLELTPREHTLLKALIAKPGHAVTKEKLFRLVFP 180 CG L +D + F G L L REH +L+ LI + G V+K L + VF Sbjct: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 Query: 181 MEESTQLEAIEVVVHRVRKKLMETGAEIMTLRGLGYLLRDR 221 + E +AIEV + R+RKKL +GA IMTLRGLGYLLR R Sbjct: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQR 221 >gi|300311842|ref|YP_003775934.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 161 bits (407), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 94/218 (43%), Positives = 130/218 (59%), Gaps = 1/218 (0%) Query: 1 MHILLVEDDIDMSRALLRALERRGFQVTHCADGISALSHIKDGIGDLVVLDLNIPGLDGL 60 M ILLVED D++ A++ L R G V ++G A + + DL++LD+ +P DG Sbjct: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHASRRLSESY-DLLILDVMLPQQDGF 59 Query: 61 HLLQRIRSQDIGTPVIVLTARGAVGDRVVGLNAGADDYLAKPFDLDELDARIRALLRRRT 120 LLQ++R++ TPV++LTA V +RV L+ GADDYL KPFD ELDARIR LLRR Sbjct: 60 SLLQQLRTRGHHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 Query: 121 NADDGVQRCGRLRFDRGSGAFYCGDDPLELTPREHTLLKALIAKPGHAVTKEKLFRLVFP 180 + C L DR S + P+ELT RE TLL+ + A+PG K++L +F Sbjct: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 Query: 181 MEESTQLEAIEVVVHRVRKKLMETGAEIMTLRGLGYLL 218 ++++ ++E V R+RKKL EI TLRGLGY L Sbjct: 180 VDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQL 217 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 160 bits (404), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 94/218 (43%), Positives = 131/218 (60%) Query: 1 MHILLVEDDIDMSRALLRALERRGFQVTHCADGISALSHIKDGIGDLVVLDLNIPGLDGL 60 M ILL EDD ++ L R+L G+ +G+ A S + DL++LDL +P + GL Sbjct: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 Query: 61 HLLQRIRSQDIGTPVIVLTARGAVGDRVVGLNAGADDYLAKPFDLDELDARIRALLRRRT 120 +L+R+R+++ PV++LTA +V RV GL+ GADDY+AKPF L EL+AR+RAL RR Sbjct: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGA 120 Query: 121 NADDGVQRCGRLRFDRGSGAFYCGDDPLELTPREHTLLKALIAKPGHAVTKEKLFRLVFP 180 V R G L +D+ Y G+ LEL+ RE LL+ L+ + G V+KE+L + Sbjct: 121 GGGPTVIRHGPLSYDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCE 180 Query: 181 MEESTQLEAIEVVVHRVRKKLMETGAEIMTLRGLGYLL 218 E AIEV VHR+RKK+ G I T+RGLGY L Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEVGGVRIATVRGLGYCL 218 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.143 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 686,363 Number of extensions: 27162 Number of successful extensions: 237 Number of sequences better than 1.0e-08: 49 Number of HSP's gapped: 192 Number of HSP's successfully gapped: 49 Length of query: 228 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 146 Effective length of database: 1,231,600 Effective search space: 179813600 Effective search space used: 179813600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)