BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0449.p
         (267 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314010|ref|YP_003778102.1| phosphate/phosphonate ABC trans...   525   e-150
gi|300314009|ref|YP_003778101.1| phosphate/phosphonate ABC trans...   123   1e-29

>gi|300314010|ref|YP_003778102.1| phosphate/phosphonate ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 267

 Score =  525 bits (1351), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 267/267 (100%), Positives = 267/267 (100%)

Query: 1   MTTSNTSPTARVSLAFRPQLATRVVIWLIALYAIYAATQLGFSWERFSSGLGNGAKFLGR 60
           MTTSNTSPTARVSLAFRPQLATRVVIWLIALYAIYAATQLGFSWERFSSGLGNGAKFLGR
Sbjct: 1   MTTSNTSPTARVSLAFRPQLATRVVIWLIALYAIYAATQLGFSWERFSSGLGNGAKFLGR 60

Query: 61  MFPPDLSKGDILWGGIKETLQIAVLASLFGILFSLPIGLMGARNLMPSWISWPARALVSV 120
           MFPPDLSKGDILWGGIKETLQIAVLASLFGILFSLPIGLMGARNLMPSWISWPARALVSV
Sbjct: 61  MFPPDLSKGDILWGGIKETLQIAVLASLFGILFSLPIGLMGARNLMPSWISWPARALVSV 120

Query: 121 CRSLHPVIVAILFVKAVGFGALAGVLALIVASIGFIGKLFAEAIEEISIKQVEAIRATGA 180
           CRSLHPVIVAILFVKAVGFGALAGVLALIVASIGFIGKLFAEAIEEISIKQVEAIRATGA
Sbjct: 121 CRSLHPVIVAILFVKAVGFGALAGVLALIVASIGFIGKLFAEAIEEISIKQVEAIRATGA 180

Query: 181 SFMNVILFGVLPQVMSRFVGFSTYQLDSNLRNSTMVGIVGAGGVGGVLFSAFQRFDYDFV 240
           SFMNVILFGVLPQVMSRFVGFSTYQLDSNLRNSTMVGIVGAGGVGGVLFSAFQRFDYDFV
Sbjct: 181 SFMNVILFGVLPQVMSRFVGFSTYQLDSNLRNSTMVGIVGAGGVGGVLFSAFQRFDYDFV 240

Query: 241 FTILVTIITIIVVGELLANSVKKVFNV 267
           FTILVTIITIIVVGELLANSVKKVFNV
Sbjct: 241 FTILVTIITIIVVGELLANSVKKVFNV 267


>gi|300314009|ref|YP_003778101.1| phosphate/phosphonate ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 277

 Score =  123 bits (309), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/261 (35%), Positives = 144/261 (55%), Gaps = 4/261 (1%)

Query: 7   SPTARVSLAFRP-QLATRVVIWL-IALYAIYAATQLGFSWERFSSGLGNGAKFLGRMFPP 64
           +P  R      P Q   R  +WL IAL  + +   +    E         +  L RM+P 
Sbjct: 14  NPAQREWQRHTPLQRVLRFTVWLVIALAVVQSLRYIEIIPEFLYDAPEQMSDMLARMWPI 73

Query: 65  DLSK-GDILWGGIKETLQIAVLASLFGILFSLPIGLMGARNLMPSW-ISWPARALVSVCR 122
           D +  G  +  G+ ETL IA L +L  I+ ++P GL+ A NL     ++  AR ++   R
Sbjct: 74  DWAYFGSDVQAGLIETLHIATLGTLLSIVLAIPFGLLVAPNLTRHRGLNLFARIVLVASR 133

Query: 123 SLHPVIVAILFVKAVGFGALAGVLALIVASIGFIGKLFAEAIEEISIKQVEAIRATGASF 182
           S++ ++ A+LF+   G G LAG LA+   SIGF+GK+  E IE++    +EA++A+GAS 
Sbjct: 134 SVNSLVWALLFLAIFGPGPLAGTLAIAFRSIGFVGKMAGETIEQMPRGPIEALQASGASK 193

Query: 183 MNVILFGVLPQVMSRFVGFSTYQLDSNLRNSTMVGIVGAGGVGGVLFSAFQRFDYDFVFT 242
            + I +G  PQ+   F+     + D N+R S ++GIVGAGGVG VL +A   F +  V T
Sbjct: 194 FSEIWYGYWPQLKPAFMSIVLLRWDINVRESAVLGIVGAGGVGMVLDTALNLFQWPRVAT 253

Query: 243 ILVTIITIIVVGELLANSVKK 263
           +LV+I  I++V E++   ++K
Sbjct: 254 VLVSIFAIVIVTEVVVTQIRK 274


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.142    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 611,541
Number of extensions: 20984
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 5
Length of query: 267
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 183
Effective length of database: 1,222,130
Effective search space: 223649790
Effective search space used: 223649790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)