BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0448.p
         (277 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314009|ref|YP_003778101.1| phosphate/phosphonate ABC trans...   548   e-157
gi|300314010|ref|YP_003778102.1| phosphate/phosphonate ABC trans...    94   8e-21

>gi|300314009|ref|YP_003778101.1| phosphate/phosphonate ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 277

 Score =  548 bits (1411), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 277/277 (100%), Positives = 277/277 (100%)

Query: 1   MSDTVLPRPAAALNPAQREWQRHTPLQRVLRFTVWLVIALAVVQSLRYIEIIPEFLYDAP 60
           MSDTVLPRPAAALNPAQREWQRHTPLQRVLRFTVWLVIALAVVQSLRYIEIIPEFLYDAP
Sbjct: 1   MSDTVLPRPAAALNPAQREWQRHTPLQRVLRFTVWLVIALAVVQSLRYIEIIPEFLYDAP 60

Query: 61  EQMSDMLARMWPIDWAYFGSDVQAGLIETLHIATLGTLLSIVLAIPFGLLVAPNLTRHRG 120
           EQMSDMLARMWPIDWAYFGSDVQAGLIETLHIATLGTLLSIVLAIPFGLLVAPNLTRHRG
Sbjct: 61  EQMSDMLARMWPIDWAYFGSDVQAGLIETLHIATLGTLLSIVLAIPFGLLVAPNLTRHRG 120

Query: 121 LNLFARIVLVASRSVNSLVWALLFLAIFGPGPLAGTLAIAFRSIGFVGKMAGETIEQMPR 180
           LNLFARIVLVASRSVNSLVWALLFLAIFGPGPLAGTLAIAFRSIGFVGKMAGETIEQMPR
Sbjct: 121 LNLFARIVLVASRSVNSLVWALLFLAIFGPGPLAGTLAIAFRSIGFVGKMAGETIEQMPR 180

Query: 181 GPIEALQASGASKFSEIWYGYWPQLKPAFMSIVLLRWDINVRESAVLGIVGAGGVGMVLD 240
           GPIEALQASGASKFSEIWYGYWPQLKPAFMSIVLLRWDINVRESAVLGIVGAGGVGMVLD
Sbjct: 181 GPIEALQASGASKFSEIWYGYWPQLKPAFMSIVLLRWDINVRESAVLGIVGAGGVGMVLD 240

Query: 241 TALNLFQWPRVATVLVSIFAIVIVTEVVVTQIRKRIL 277
           TALNLFQWPRVATVLVSIFAIVIVTEVVVTQIRKRIL
Sbjct: 241 TALNLFQWPRVATVLVSIFAIVIVTEVVVTQIRKRIL 277


>gi|300314010|ref|YP_003778102.1| phosphate/phosphonate ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 267

 Score = 94.4 bits (233), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 89/248 (35%), Positives = 140/248 (56%), Gaps = 3/248 (1%)

Query: 27  QRVLRFTVWLVIALAVVQSLRYIEIIPEFLYDAPEQMSDMLARMWPIDWAYFGSDVQAGL 86
           Q   R  +WL IAL  + +   +    E         +  L RM+P D +  G  +  G+
Sbjct: 19  QLATRVVIWL-IALYAIYAATQLGFSWERFSSGLGNGAKFLGRMFPPDLSK-GDILWGGI 76

Query: 87  IETLHIATLGTLLSIVLAIPFGLLVAPNLTRHRGLNLFARIVLVASRSVNSLVWALLFLA 146
            ETL IA L +L  I+ ++P GL+ A NL     ++  AR ++   RS++ ++ A+LF+ 
Sbjct: 77  KETLQIAVLASLFGILFSLPIGLMGARNLMPSW-ISWPARALVSVCRSLHPVIVAILFVK 135

Query: 147 IFGPGPLAGTLAIAFRSIGFVGKMAGETIEQMPRGPIEALQASGASKFSEIWYGYWPQLK 206
             G G LAG LA+   SIGF+GK+  E IE++    +EA++A+GAS  + I +G  PQ+ 
Sbjct: 136 AVGFGALAGVLALIVASIGFIGKLFAEAIEEISIKQVEAIRATGASFMNVILFGVLPQVM 195

Query: 207 PAFMSIVLLRWDINVRESAVLGIVGAGGVGMVLDTALNLFQWPRVATVLVSIFAIVIVTE 266
             F+     + D N+R S ++GIVGAGGVG VL +A   F +  V T+LV+I  I++V E
Sbjct: 196 SRFVGFSTYQLDSNLRNSTMVGIVGAGGVGGVLFSAFQRFDYDFVFTILVTIITIIVVGE 255

Query: 267 VVVTQIRK 274
           ++   ++K
Sbjct: 256 LLANSVKK 263


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 807,681
Number of extensions: 32354
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 3
Length of query: 277
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 193
Effective length of database: 1,222,130
Effective search space: 235871090
Effective search space used: 235871090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)