BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0437.p (232 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313999|ref|YP_003778091.1| urea ABC transporter ATPase [He... 464 e-132 gi|300311943|ref|YP_003776035.1| branched-chain amino acid ABC t... 217 6e-58 gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC t... 190 9e-50 gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t... 181 4e-47 gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC t... 181 5e-47 >gi|300313999|ref|YP_003778091.1| urea ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 232 Score = 464 bits (1195), Expect = e-132, Method: Compositional matrix adjust. Identities = 230/232 (99%), Positives = 231/232 (99%) Query: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVMF 60 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVMF Sbjct: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVMF 60 Query: 61 EGQDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRASTIKGEVYELF 120 EG DITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRAS+IKGEVYELF Sbjct: 61 EGHDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRASSIKGEVYELF 120 Query: 121 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR 180 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR Sbjct: 121 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR 180 Query: 181 QRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGEDVKKHLAV 232 QRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGEDVKKHLAV Sbjct: 181 QRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGEDVKKHLAV 232 >gi|300311943|ref|YP_003776035.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 229 Score = 217 bits (553), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 108/233 (46%), Positives = 160/233 (68%), Gaps = 5/233 (2%) Query: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVMF 60 M +V++L YG + + V L V K ++++++GRNG+GKTTL K LMG+LP+ G++ Sbjct: 1 MFKVSQLASGYGQSKVIHDVDLSVAKEEIVAVMGRNGMGKTTLFKTLMGILPLRGGSISI 60 Query: 61 EGQDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGM-ATLSGRRASTIKGEVYEL 119 +G ++ L+ HQR + G+AYVPQGR IF+ +TV EN+ G+ A G+ + E+Y L Sbjct: 61 DGVELGSLESHQRVERGVAYVPQGRMIFSHMTVLENIQTGLPAAAKGK----VPDELYSL 116 Query: 120 FPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLL 179 FPVL +M R+GG+LSGGQQQQLAIARAL P++++LDEPTEGIQPSIIKDI R + + Sbjct: 117 FPVLYDMRTRKGGNLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIARSLKEI 176 Query: 180 RQRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGEDVKKHLAV 232 R+ + I++ EQ F E+AD F+V+ +G V T++ +D + K+L+V Sbjct: 177 RKIRALTIVVSEQVLSFTLEIADRFLVIDKGRFVYEDTRENVDAPTISKYLSV 229 >gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 190 bits (482), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 98/217 (45%), Positives = 140/217 (64%), Gaps = 1/217 (0%) Query: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVMF 60 +LQV L+ +Y AH L G+ L+++ G+V++L+GRNG GK+T LK LMG+L +G + Sbjct: 5 LLQVQGLHGWYADAHILFGLDLEIRAGEVVALMGRNGAGKSTTLKALMGLLERRQGQIRL 64 Query: 61 EGQDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRASTIKGEVYELF 120 G+DI KL PHQRA+LG+ YVP+ R IF L+V EN+ G ++ELF Sbjct: 65 AGRDIGKLAPHQRARLGLGYVPEDRRIFTELSVLENLETGRQPPRPGAPHWTPQALFELF 124 Query: 121 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR 180 P L M R GG +SGG+QQ L IAR L+ P+L++LDEP+EG+ P I++ + +I L+ Sbjct: 125 PNLGAMPQRLGGRMSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVIVEQMAAMIQELK 184 Query: 181 QRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGT 217 + G I ILLCEQ FA + D ++ +G +VAAGT Sbjct: 185 RSG-IAILLCEQNLHFASLVCDRGYLLDQGRIVAAGT 220 >gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 181 bits (459), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 98/222 (44%), Positives = 144/222 (64%), Gaps = 7/222 (3%) Query: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVMF 60 +LQV +++ YYG +H L+GVSL V G+V++LLGRNG GKTT LK ++GV+P +G V+F Sbjct: 2 ILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPVQGRVLF 61 Query: 61 EGQDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRASTIK-GEVYEL 119 EGQ I+ L ++ A G+ VP+ R IF LTVEEN+ T++ R+ S E+Y + Sbjct: 62 EGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENL-----TMAARKESAWGLEEIYAI 116 Query: 120 FPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLL 179 FP LKE GG LSGG+QQ LAIARAL+ P++++LDEP EG+ P I+ +I I + Sbjct: 117 FPRLKERRKNGGGQLSGGEQQMLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQIRQI 176 Query: 180 RQRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQM 221 + G + I+L EQ + +LAD ++ +G +V G+ + Sbjct: 177 KATG-MSIILVEQNLEVCTQLADRHYIVEQGRIVYHGSNAEF 217 >gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 238 Score = 181 bits (458), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 95/226 (42%), Positives = 141/226 (62%), Gaps = 2/226 (0%) Query: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVMF 60 +L V L YG + L GV L VQ+G+++S+LGRNG G++TLLK LMG+LP ++G+ F Sbjct: 7 LLSVTGLQAGYGHSRVLHGVDLTVQRGEIVSILGRNGAGRSTLLKALMGLLP-SRGDCRF 65 Query: 61 EGQDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRASTIKGEVYELF 120 EG+DI+ L H A+LG+ YVP+ RE+F L+V +N+L+G + +++ LF Sbjct: 66 EGRDISGLPTHAIARLGMGYVPESREVFPTLSVAQNLLLGRKPGPQPGRGWCEDDIHALF 125 Query: 121 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR 180 P L + LSGG+QQ LA+ RALL P L+++DEPTEG+ P +++ + R + LR Sbjct: 126 PALYKRRQVAAAALSGGEQQMLALGRALLGNPSLLLVDEPTEGLAPQMVEQVARALQELR 185 Query: 181 QRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGEDV 226 RG + +LL EQ A EL+ VM RGE+V GT + ++ Sbjct: 186 TRG-VAVLLVEQKQALALELSQRVYVMGRGEMVFEGTPTGLSAQET 230 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.139 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 638,851 Number of extensions: 24477 Number of successful extensions: 414 Number of sequences better than 1.0e-08: 129 Number of HSP's gapped: 258 Number of HSP's successfully gapped: 145 Length of query: 232 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 150 Effective length of database: 1,231,600 Effective search space: 184740000 Effective search space used: 184740000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)