BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0431.p
         (397 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313992|ref|YP_003778084.1| extracellular solute-binding, f...   800   0.0  
gi|300309614|ref|YP_003773706.1| sugar ABC transporter periplasm...    72   5e-14

>gi|300313992|ref|YP_003778084.1| extracellular solute-binding,
           family 1 protein [Herbaspirillum seropedicae SmR1]
          Length = 473

 Score =  800 bits (2067), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/397 (98%), Positives = 393/397 (98%)

Query: 1   VLNALVWAPDWAEEMQRVCDGFMHEHPGVRINLQFMIGNSVEENLKPRATTDSLPDIVSV 60
           VLNALVWAPDWAEEMQRVCDGFMHEHPGVRINLQFMIGNSVEENLKPRATTDSLPDIVSV
Sbjct: 77  VLNALVWAPDWAEEMQRVCDGFMHEHPGVRINLQFMIGNSVEENLKPRATTDSLPDIVSV 136

Query: 61  NASPYTASLADQGLLADLGQTRSWHGLLDILQREWTAPGGCRFGLPSGVATTLIYYHPDL 120
           NASPYTASLADQGLLADLGQTRSWHGLLDILQREWTAPGGCRFGLPSGVATTLIYYHPDL
Sbjct: 137 NASPYTASLADQGLLADLGQTRSWHGLLDILQREWTAPGGCRFGLPSGVATTLIYYHPDL 196

Query: 121 FERAGIQAPPGDFEQFLAAGAALRRAGITPLALSGGFPNMLGNGPFSYGFANLVASSTPD 180
           FERAGIQA PGDFEQFLAAGAALRRAGITPLALSGGFPNMLGNGPFSYGFANLVASSTPD
Sbjct: 197 FERAGIQALPGDFEQFLAAGAALRRAGITPLALSGGFPNMLGNGPFSYGFANLVASSTPD 256

Query: 181 WRQHIANGTLALDNAQGWAVFSRLRTLMTRQLVQADCLRAGYDATLRQFAEGRAAMTFQG 240
           WRQHIANGTLALDNAQGWAVFSRLRTLMTR LVQADCLRAGYDATLRQFAEGRAAMTFQG
Sbjct: 257 WRQHIANGTLALDNAQGWAVFSRLRTLMTRHLVQADCLRAGYDATLRQFAEGRAAMTFQG 316

Query: 241 SWAAGVLMQGRGQPVGVFVPPWNDKDHPRQAVIGSETGFAIAQRSSARHRQAAARFLDYL 300
           SWAAGVLMQGRGQPVGVFVPPWNDKD PRQAVIGSETGFAIAQR SARHRQAAARFLDYL
Sbjct: 317 SWAAGVLMQGRGQPVGVFVPPWNDKDQPRQAVIGSETGFAIAQRISARHRQAAARFLDYL 376

Query: 301 FGAGLPVWQGKRQNILPFKTPAPSAKGDAALFALAAGMARDAAATGAPGLYYSYLPVNTI 360
           FGAGLPVWQGKRQNILPFKTPAPSAKGDAALFALAAGMARDAAATGAPGLYYSYLPVNTI
Sbjct: 377 FGAGLPVWQGKRQNILPFKTPAPSAKGDAALFALAAGMARDAAATGAPGLYYSYLPVNTI 436

Query: 361 DVLHALLPAVLSGKTTPVQAARALQESISAQARVGGK 397
           DVLHALLPAVLSGKTTPVQAARALQESISAQARVGGK
Sbjct: 437 DVLHALLPAVLSGKTTPVQAARALQESISAQARVGGK 473


>gi|300309614|ref|YP_003773706.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 415

 Score = 72.4 bits (176), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 156/369 (42%), Gaps = 27/369 (7%)

Query: 16  QRVCDGFMHEHPGVRINLQFMIGNSVEENLKPRATTDSLPDIVSVNASPYTASLADQGLL 75
           Q   D F   +P V I   F+   + +  L P   +   PDI++ +     A  A +GLL
Sbjct: 45  QSTMDEFKKANPDVDIKPSFIEEEAYKVQL-PGWLSTQAPDIINWHNGERMAFYASRGLL 103

Query: 76  ADLGQTRSWHGLLDIL--QREWTAPGGCRFGLPSGVATTLIYYHPDLFERAGIQAPPGDF 133
            D+ +    +G        +E ++  G ++ +P+   +  ++Y  DLF++ GI   P  +
Sbjct: 104 EDVSEDWKKNGWDATYASTKEASSWHGKQYSVPTVYYSWGMFYRKDLFKKVGIAGEPKTW 163

Query: 134 EQFLAAGAALRRAGITPLALSGGFPNMLGNGPFSYGFANLVASSTPDWRQHIANGTLALD 193
           ++FL A   L+ AGI P+A+ G     L  G F Y    +  ++   + Q +  G +A  
Sbjct: 164 DEFLDACKKLKAAGIAPIAVGGRDAWTLA-GWFDYLDLRINGNA---FHQQLMAGDIAYT 219

Query: 194 NAQGWAVFSRLRTLMTRQLVQADCLRAGYDATLRQFAEGRAAMTFQGSWAAGVLMQGRGQ 253
           +A+   V +  ++L+  +    + L    D       +G+AAM   G++ A         
Sbjct: 220 DARVKKVHTAWKSLIDNKYFIDNALSYDLDGAQPFLFQGKAAMMLMGTFIAKGFPAKLAP 279

Query: 254 PVGVFVPPWNDKDHPRQAVIGSETGFAIAQRSSARHRQAAARFLDYLFGAGLPVWQGKRQ 313
            +G F  P  D + P      +E+   I   + AR++  A RF+ ++    +     +  
Sbjct: 280 EMGYFQFPIIDANVPTAEEGPTES---IHIPAKARNKADARRFIAFVGTPAISAKLAEGL 336

Query: 314 NILP--FKTPAPS-------------AKGDAALFALAAGMARDAAATGAPGL-YYSYLPV 357
             LP   K+PAP+             AKG  + F     M ++ A  G  G+  +   P 
Sbjct: 337 GSLPANSKSPAPTEPISRIGFEILSNAKGGISQF-YDRDMTKEMADEGMKGMQKFVSDPT 395

Query: 358 NTIDVLHAL 366
              DVL+ L
Sbjct: 396 RIDDVLNEL 404


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,237,236
Number of extensions: 49487
Number of successful extensions: 159
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 2
Length of query: 397
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 310
Effective length of database: 1,207,925
Effective search space: 374456750
Effective search space used: 374456750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)