BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0402.p
         (304 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313966|ref|YP_003778058.1| transmembrane protein [Herbaspi...   591   e-170

>gi|300313966|ref|YP_003778058.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 322

 Score =  591 bits (1523), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 282/300 (94%), Positives = 290/300 (96%)

Query: 5   VIEQREQASMPTGDLTYRPQYAFTIVTNYLVLMLMHYSRGDSAEVVTQHLPDLISAWEEA 64
           + +Q ++   P+G+ +YRPQYAFTIV+NYL LMLMHYSRGDSAEVVTQHLPDLISAWEEA
Sbjct: 23  IADQLDRLGRPSGNPSYRPQYAFTIVSNYLELMLMHYSRGDSAEVVTQHLPDLISAWEEA 82

Query: 65  ERLHLEIMSSEDYWRKFNWSTNLDHYIVCFWITGLALCSPLGEDGWKRLIALMGNEGKDR 124
           ERLHLEIMSSEDYWRKFNWSTNLDHYIVCFWITGLALCSPLGEDGWKRLIALMGNEGKDR
Sbjct: 83  ERLHLEIMSSEDYWRKFNWSTNLDHYIVCFWITGLALCSPLGEDGWKRLIALMGNEGKDR 142

Query: 125 LLDTILASRQQNRVIGTTLCHPKPYQQLLDVVTCDPEQQAHALQRFVSIWYADLDRPPAN 184
           LLDTILASRQQNRVIGTTLCHPKPYQQLLDVVTCDPEQQAHALQRFVS WYADLDRPPAN
Sbjct: 143 LLDTILASRQQNRVIGTTLCHPKPYQQLLDVVTCDPEQQAHALQRFVSTWYADLDRPPAN 202

Query: 185 KKLSSDTALYNRPFWYKYGEHNRQGGAYFGQWCVEAVAVAKLFGIDDSLCVGHPLYPGDL 244
           KKLSSDTALYNRPFWYKYGEHNRQGGAYFGQWCVEAVAVAKLFGIDDSLCVGHP YPGDL
Sbjct: 203 KKLSSDTALYNRPFWYKYGEHNRQGGAYFGQWCVEAVAVAKLFGIDDSLCVGHPQYPGDL 262

Query: 245 LRPGVVTPPDLQRLPASLKKWPPDTPAEENASGSETDAAQKSSTTASRGWLARLFSRNRD 304
           LRPGVVTPPDLQRLPASLKKWPPDTPAEENASGSE DAAQKSSTTASRGWLARLFSRNRD
Sbjct: 263 LRPGVVTPPDLQRLPASLKKWPPDTPAEENASGSENDAAQKSSTTASRGWLARLFSRNRD 322


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,059,991
Number of extensions: 45387
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,217,395
Effective search space: 266609505
Effective search space used: 266609505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)