BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0390.p
         (163 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313955|ref|YP_003778047.1| thioredoxin protein [Herbaspiri...   336   7e-94
gi|300309732|ref|YP_003773824.1| thioredoxin-related transmembra...    59   1e-10

>gi|300313955|ref|YP_003778047.1| thioredoxin protein
           [Herbaspirillum seropedicae SmR1]
          Length = 175

 Score =  336 bits (861), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 163/163 (100%), Positives = 163/163 (100%)

Query: 1   MIKLAALAVVAAIAAFTYFKVNAGNAAPDVTFTKLDGQQVNLKDLRGKVVMVNFWATSCT 60
           MIKLAALAVVAAIAAFTYFKVNAGNAAPDVTFTKLDGQQVNLKDLRGKVVMVNFWATSCT
Sbjct: 13  MIKLAALAVVAAIAAFTYFKVNAGNAAPDVTFTKLDGQQVNLKDLRGKVVMVNFWATSCT 72

Query: 61  TCVGEMPQMIDTYNKFKDRGLDFVAVAMSYDPPNYVLNYTETRKLPFKVALDPQDTLAKA 120
           TCVGEMPQMIDTYNKFKDRGLDFVAVAMSYDPPNYVLNYTETRKLPFKVALDPQDTLAKA
Sbjct: 73  TCVGEMPQMIDTYNKFKDRGLDFVAVAMSYDPPNYVLNYTETRKLPFKVALDPQDTLAKA 132

Query: 121 FGDVKLTPTTFVIDKQGNIIKRYVGEPQFAELHQLLEKALSAA 163
           FGDVKLTPTTFVIDKQGNIIKRYVGEPQFAELHQLLEKALSAA
Sbjct: 133 FGDVKLTPTTFVIDKQGNIIKRYVGEPQFAELHQLLEKALSAA 175


>gi|300309732|ref|YP_003773824.1| thioredoxin-related transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 173

 Score = 59.3 bits (142), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 8/132 (6%)

Query: 28  PDVTFTKLDGQQVNLKDLRGKVVMVNFWATSCTTCVGEMPQMIDTYNKFKDRGLDFVAVA 87
           PD T     GQ  +L   RGK ++VNFWAT C  CV EMP++     +     +  + V 
Sbjct: 48  PDAT-----GQMQSLAQYRGKPLIVNFWATWCGPCVEEMPELTALQQEIAPVQILGIGVD 102

Query: 88  MSYDPPNYVLNYTETRKLPFKVALDPQDTLAKAFGD-VKLTPTTFVIDKQGNIIKRYVGE 146
              +   +   Y    + P  VA      L + FG+     P T ++ K GN+ K Y+G 
Sbjct: 103 SQENIGKFAQKY--QIRYPLFVAGTGATDLLRQFGNQAGGLPFTALVGKDGNVKKIYLGR 160

Query: 147 PQFAELHQLLEK 158
            +F EL Q L +
Sbjct: 161 LKFDELRQDLSQ 172


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 434,662
Number of extensions: 15203
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 2
Length of query: 163
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 85
Effective length of database: 1,250,540
Effective search space: 106295900
Effective search space used: 106295900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)