BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0385.p
         (311 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313950|ref|YP_003778042.1| methyltransferase [Herbaspirill...   617   e-178
gi|300311215|ref|YP_003775307.1| methyltransferase transmembrane...    62   7e-11

>gi|300313950|ref|YP_003778042.1| methyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 311

 Score =  617 bits (1591), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 310/311 (99%), Positives = 310/311 (99%)

Query: 1   MNQNSSVAATILQDAAQQNYPVSALYVLATPIGNVCDISLRGLHLLSIADAVACEDTRNT 60
           MNQNSSVAATILQDAAQQNYPVSALYVLATPIGNVCDISLRGLHLLSIADAVACEDTRNT
Sbjct: 1   MNQNSSVAATILQDAAQQNYPVSALYVLATPIGNVCDISLRGLHLLSIADAVACEDTRNT 60

Query: 61  SQLLQRYGLSRPLLATHEHNEREAAAKIIERLHAGQRVALVSDAGTPAVSDPGARVVDAV 120
           SQLLQRYGLSRPLLATHEHNEREAAAKIIERLHAGQRVALVSDAGTPAVSDPGARVVDAV
Sbjct: 61  SQLLQRYGLSRPLLATHEHNEREAAAKIIERLHAGQRVALVSDAGTPAVSDPGARVVDAV 120

Query: 121 RAAGLRVIPLPGASAAITALSASGLTDERFHFVGFLPAKTRQRETALQELVELPAALVFY 180
           RAAGLRVIPLPGASAAITALSASGLTDERFHFVGFLPAKTRQRETALQELVELPAALVFY
Sbjct: 121 RAAGLRVIPLPGASAAITALSASGLTDERFHFVGFLPAKTRQRETALQELVELPAALVFY 180

Query: 181 EAPHRIVETVQSLLQVFGPQRQVVLARELTKLFEDIHRCPLGEAPDWLAQDANRQRGEFV 240
           EAPHRIVETVQSLLQVFGPQRQVVLARELTKLFEDIHRC LGEAPDWLAQDANRQRGEFV
Sbjct: 181 EAPHRIVETVQSLLQVFGPQRQVVLARELTKLFEDIHRCSLGEAPDWLAQDANRQRGEFV 240

Query: 241 ILVEGAPVTEGDGAEAERVLRILLAELPVRQAAALAAQITGVKKNALYDRALAIRQGAQE 300
           ILVEGAPVTEGDGAEAERVLRILLAELPVRQAAALAAQITGVKKNALYDRALAIRQGAQE
Sbjct: 241 ILVEGAPVTEGDGAEAERVLRILLAELPVRQAAALAAQITGVKKNALYDRALAIRQGAQE 300

Query: 301 DEEAGEDEDDA 311
           DEEAGEDEDDA
Sbjct: 301 DEEAGEDEDDA 311


>gi|300311215|ref|YP_003775307.1| methyltransferase transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 4/120 (3%)

Query: 95  GQRVALVSDAGTPAVSDPGARVVDAVRAAGLRVIPLPGASAAITALSASGLTDERFHFVG 154
           G+   L+S+AG PAV+DPGA +V      G++V PL G S+ + A+ ASGL  + F F G
Sbjct: 97  GRDGGLISEAGVPAVADPGANLVRLAHQHGIQVRPLVGPSSLLLAVMASGLNGQSFAFNG 156

Query: 155 FLPAKTRQRETALQELVEL----PAALVFYEAPHRIVETVQSLLQVFGPQRQVVLARELT 210
           +LP     R   +++L +         +  E P+R    + +L Q   P   + +A +L+
Sbjct: 157 YLPTDAEARSKRIRQLEDRSRKEKQTQLLIETPYRNGAMLDALAQSCQPGTLICVATDLS 216


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 849,017
Number of extensions: 33648
Number of successful extensions: 163
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 2
Length of query: 311
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,217,395
Effective search space: 275131270
Effective search space used: 275131270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)