BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0382.p (656 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313947|ref|YP_003778039.1| cell division protein FtsI [Her... 1350 0.0 gi|300309672|ref|YP_003773764.1| cell division FtsI protein/peni... 135 1e-32 >gi|300313947|ref|YP_003778039.1| cell division protein FtsI [Herbaspirillum seropedicae SmR1] Length = 656 Score = 1350 bits (3493), Expect = 0.0, Method: Compositional matrix adjust. Identities = 656/656 (100%), Positives = 656/656 (100%) Query: 1 MTEFKNTAHELRLFRIRLLAVSVLVLVCFSLLLARFLWLQVVRHDAYAAQAEENRISVVP 60 MTEFKNTAHELRLFRIRLLAVSVLVLVCFSLLLARFLWLQVVRHDAYAAQAEENRISVVP Sbjct: 1 MTEFKNTAHELRLFRIRLLAVSVLVLVCFSLLLARFLWLQVVRHDAYAAQAEENRISVVP 60 Query: 61 IVPNRGLILDRNGVVLARNYSAYTLEITPSKIRTNIDDLIDELGTLVEIQPRDRRRFRRL 120 IVPNRGLILDRNGVVLARNYSAYTLEITPSKIRTNIDDLIDELGTLVEIQPRDRRRFRRL Sbjct: 61 IVPNRGLILDRNGVVLARNYSAYTLEITPSKIRTNIDDLIDELGTLVEIQPRDRRRFRRL 120 Query: 121 QEESKNFESVPIRTRLTDEEVAKFTAQRYRFPGVEVQARLFRQYPYGKTAAHVIGYIGRI 180 QEESKNFESVPIRTRLTDEEVAKFTAQRYRFPGVEVQARLFRQYPYGKTAAHVIGYIGRI Sbjct: 121 QEESKNFESVPIRTRLTDEEVAKFTAQRYRFPGVEVQARLFRQYPYGKTAAHVIGYIGRI 180 Query: 181 SQRDAERIADSDDEANYNGTDYIGKEGLEKSYESQLHGTTGYEEVEISASGRAVRSLSRT 240 SQRDAERIADSDDEANYNGTDYIGKEGLEKSYESQLHGTTGYEEVEISASGRAVRSLSRT Sbjct: 181 SQRDAERIADSDDEANYNGTDYIGKEGLEKSYESQLHGTTGYEEVEISASGRAVRSLSRT 240 Query: 241 PATPGKNLILSIDIELQKVVEEAFGDQKGALVAINPATGDILAYVSQPSYDPNLFVEGID 300 PATPGKNLILSIDIELQKVVEEAFGDQKGALVAINPATGDILAYVSQPSYDPNLFVEGID Sbjct: 241 PATPGKNLILSIDIELQKVVEEAFGDQKGALVAINPATGDILAYVSQPSYDPNLFVEGID 300 Query: 301 QQSWDELNKSPDRPLLNRPLSGLYSPGSTYKPFMALAALELGKRRPQDAIRDPGYFILGN 360 QQSWDELNKSPDRPLLNRPLSGLYSPGSTYKPFMALAALELGKRRPQDAIRDPGYFILGN Sbjct: 301 QQSWDELNKSPDRPLLNRPLSGLYSPGSTYKPFMALAALELGKRRPQDAIRDPGYFILGN 360 Query: 361 HRFRDDKEGGHGVVDMYRSVVVSCDTYYYMLANDMGVNAIHDFMKPFGFGQITGIDLEHE 420 HRFRDDKEGGHGVVDMYRSVVVSCDTYYYMLANDMGVNAIHDFMKPFGFGQITGIDLEHE Sbjct: 361 HRFRDDKEGGHGVVDMYRSVVVSCDTYYYMLANDMGVNAIHDFMKPFGFGQITGIDLEHE 420 Query: 421 KRGILPSTEWKRTAFRKPEQKRWIAGDTVSLGIGQGYNSFTPLQLAQATAILANNGVVMK 480 KRGILPSTEWKRTAFRKPEQKRWIAGDTVSLGIGQGYNSFTPLQLAQATAILANNGVVMK Sbjct: 421 KRGILPSTEWKRTAFRKPEQKRWIAGDTVSLGIGQGYNSFTPLQLAQATAILANNGVVMK 480 Query: 481 PHLVKIVEDGVTHERTETVPKESYRIPMKQENIDFIKRAMVGVVKEGTGAAAFRGAPYES 540 PHLVKIVEDGVTHERTETVPKESYRIPMKQENIDFIKRAMVGVVKEGTGAAAFRGAPYES Sbjct: 481 PHLVKIVEDGVTHERTETVPKESYRIPMKQENIDFIKRAMVGVVKEGTGAAAFRGAPYES 540 Query: 541 GGKTGTAQVVNIAKNQKYDSKKLSRIYHDNGLYIGFAPADAPRIAIAAVVENGGWGAGVA 600 GGKTGTAQVVNIAKNQKYDSKKLSRIYHDNGLYIGFAPADAPRIAIAAVVENGGWGAGVA Sbjct: 541 GGKTGTAQVVNIAKNQKYDSKKLSRIYHDNGLYIGFAPADAPRIAIAAVVENGGWGAGVA 600 Query: 601 APLVRKAMDYFMLGKRPNEPIKSIAPAEAVTADTPVEGPTSEDNGATPTVQPDVQE 656 APLVRKAMDYFMLGKRPNEPIKSIAPAEAVTADTPVEGPTSEDNGATPTVQPDVQE Sbjct: 601 APLVRKAMDYFMLGKRPNEPIKSIAPAEAVTADTPVEGPTSEDNGATPTVQPDVQE 656 >gi|300309672|ref|YP_003773764.1| cell division FtsI protein/penicillin-binding protein 2 [Herbaspirillum seropedicae SmR1] Length = 592 Score = 135 bits (340), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 157/622 (25%), Positives = 249/622 (40%), Gaps = 113/622 (18%) Query: 6 NTAHELRLFRIRLLAVSVLVLVCFSLLLARFLWLQVVRHDAYAAQAEENRISVVPIVPNR 65 N +++L R V ++ V F L+ R LWLQ V D Q + + R Sbjct: 26 NPILQVKLPAWRSRFVLFVLFVAFVALVLRALWLQGVSTDFLQKQGASRYARTLELPATR 85 Query: 66 GLILDRNGVVLARNYSAYTLEITPSKIRTNIDDLIDELGTLVEIQPRDRRRFRRLQEESK 125 G I DRNG VLA + + P ++ D + +L L+E+ D R+ + + Sbjct: 86 GKITDRNGQVLASSVPVKAIWAIPEDVQAAPKDKLVQLAKLLEMSDAD---LRKKLDSDR 142 Query: 126 NFESVPIRTRLTDEEVAKFTAQRYRFPGVEVQARLFRQYPYGKTAAHVIGYIGRISQRDA 185 +F V ++ ++ + K + PG+E + R YP G+ AHV+G+ Sbjct: 143 SF--VYLKRQVEQDTADKIV--KLGIPGIETRKEYKRFYPEGEVMAHVVGF--------- 189 Query: 186 ERIADSDDEANYNGTDYIGKEGLEKSYESQLHGTTGYEEVEISASGRAVRSLS--RTPAT 243 I D+ G++G+E + + L G TG V GR V + R P Sbjct: 190 TNIEDA------------GQDGMELAAQKTLAGVTGSRRVIKDRLGRVVEDIESIREPHD 237 Query: 244 PGKNLILSIDIELQ-------KVVEEAFGDQKGALVAINPATGDILAYVSQPSYDPNLFV 296 G++L LSID ++Q K E F + G ++ ++ TG++LA + P+Y+PN Sbjct: 238 -GRDLTLSIDSKIQYIAFTQLKEAVEKFKAKAGGIIVVDAKTGEVLALANLPTYNPN--- 293 Query: 297 EGIDQQSWDELNKSPDRPLL------NRPLSGLYSPGSTYKPFMALAALELGKRRPQDAI 350 DR +L NR ++ + PGST KPF AL+ + P Sbjct: 294 ---------------DRSVLTGAQLRNRVVTDTFEPGSTMKPFTVALALDTHRVTPSTVF 338 Query: 351 RD-PGYFILGNHRFRDDKEGGHGVVDMYRSVVVSCDTYYYMLANDMGVNAIHDFMKPFGF 409 + PG +G D HG + + + + S + +A M + + GF Sbjct: 339 QTAPGKMTIGTATIGDSH--AHGPLTVAQIIEKSSNIGTAKIALGMPPEEMWEMFTTVGF 396 Query: 410 GQITGIDLEHEKRGILPSTEWKRTAFRKPEQKRWIAGDTVSLGIGQGYNSFTPLQLAQAT 469 GQ K G P A R K W + ++ G G S + +QLA A Sbjct: 397 GQ-------QPKFG-FPGA----VAGRVRPYKSWRPIEQATMSYGHGI-SVSLIQLAHAY 443 Query: 470 AILANNGVVMKPHLVKIVEDGVTHERTETVPKESYRIPMKQENIDF-----IKRAMVGVV 524 I A NG ++ K+ + P+ Q I ++R + VV Sbjct: 444 LIFARNGDIIPLSFTKVTDS-----------------PIGQRVISADTALQMRRMLETVV 486 Query: 525 KEGTGAAAFRGAPYESGGKTGTAQVVNIAKNQKYDSKKLSRIYHDNGLYIGFAPADAPRI 584 G A + Y GGKTGTA K + K R Y + + G AP PR+ Sbjct: 487 APGGTAPQAQVPGYRVGGKTGTA--------YKIEGGKYVRKYVAS--FSGIAPMSDPRL 536 Query: 585 AIAAVV---ENGGWGAGVAAPL 603 I+ ++ + +G VA P+ Sbjct: 537 IISVMIDEPQGQHYGGPVAGPV 558 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,037,730 Number of extensions: 87220 Number of successful extensions: 225 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 219 Number of HSP's successfully gapped: 2 Length of query: 656 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 565 Effective length of database: 1,188,985 Effective search space: 671776525 Effective search space used: 671776525 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)