BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0380.p
         (347 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313944|ref|YP_003778036.1| cell morphogenesis actin-like A...   697   0.0  
gi|300312141|ref|YP_003776233.1| molecular chaperone, Hsp70 fami...    61   1e-10
gi|300312439|ref|YP_003776531.1| molecular chaperone protein [He...    56   5e-09

>gi|300313944|ref|YP_003778036.1| cell morphogenesis actin-like
           ATPase [Herbaspirillum seropedicae SmR1]
          Length = 347

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/347 (100%), Positives = 347/347 (100%)

Query: 1   MFGFLRSYFSNDLAIDLGTANTLIYARGHGIVLDEPSVVAIRQQGGPNGKKTIQAVGKEA 60
           MFGFLRSYFSNDLAIDLGTANTLIYARGHGIVLDEPSVVAIRQQGGPNGKKTIQAVGKEA
Sbjct: 1   MFGFLRSYFSNDLAIDLGTANTLIYARGHGIVLDEPSVVAIRQQGGPNGKKTIQAVGKEA 60

Query: 61  KQMLGKVPGNIEAIRPMKDGVIADFTVTEQMLKQFIRMVHDSKLFRPSPRIIICVPCGST 120
           KQMLGKVPGNIEAIRPMKDGVIADFTVTEQMLKQFIRMVHDSKLFRPSPRIIICVPCGST
Sbjct: 61  KQMLGKVPGNIEAIRPMKDGVIADFTVTEQMLKQFIRMVHDSKLFRPSPRIIICVPCGST 120

Query: 121 QVERRAIRESALGAGASQVYLIEEPMAAAIGSGLPVSDATGSMVVDIGGGTTEVGIISLG 180
           QVERRAIRESALGAGASQVYLIEEPMAAAIGSGLPVSDATGSMVVDIGGGTTEVGIISLG
Sbjct: 121 QVERRAIRESALGAGASQVYLIEEPMAAAIGSGLPVSDATGSMVVDIGGGTTEVGIISLG 180

Query: 181 GMVYKGSVRVGGDKFDEAIVNYIRRNYGMLIGEQTAEAIKKEIGSAFPGSEVKEMEVKGR 240
           GMVYKGSVRVGGDKFDEAIVNYIRRNYGMLIGEQTAEAIKKEIGSAFPGSEVKEMEVKGR
Sbjct: 181 GMVYKGSVRVGGDKFDEAIVNYIRRNYGMLIGEQTAEAIKKEIGSAFPGSEVKEMEVKGR 240

Query: 241 NLSEGIPRSFTISSNEILEALTDPLNNIVSAVKNALEQTPPELGADIAEKGMMLTGGGAL 300
           NLSEGIPRSFTISSNEILEALTDPLNNIVSAVKNALEQTPPELGADIAEKGMMLTGGGAL
Sbjct: 241 NLSEGIPRSFTISSNEILEALTDPLNNIVSAVKNALEQTPPELGADIAEKGMMLTGGGAL 300

Query: 301 LRDLDRLLMEETGLPVIVAEDPLTCVVRGSGMALDRMDKLGSIFSAE 347
           LRDLDRLLMEETGLPVIVAEDPLTCVVRGSGMALDRMDKLGSIFSAE
Sbjct: 301 LRDLDRLLMEETGLPVIVAEDPLTCVVRGSGMALDRMDKLGSIFSAE 347


>gi|300312141|ref|YP_003776233.1| molecular chaperone, Hsp70 family
           [Herbaspirillum seropedicae SmR1]
          Length = 642

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 104/231 (45%), Gaps = 15/231 (6%)

Query: 112 IICVPCGSTQVERRAIRESALGAGASQVYLIEEPMAAAIGSGLPVSDATGSMVVDIGGGT 171
           +I VP      +R+A +++A  AG + + L+ EP AAAI  GL  +      + D+GGGT
Sbjct: 162 VITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDQAAEGVFAIYDLGGGT 221

Query: 172 TEVGIISLGGMVYK-----GSVRVGGDKFDEAIVNYIRRNYGMLIGEQTAEAIKKEIGSA 226
            ++ I+ L   V++     G   +GGD FD  I ++I     +   E T +  ++ + +A
Sbjct: 222 FDISILKLSRGVFEVLATNGDGALGGDDFDRCIHDWIVDQSPLASAELTTQDTRRLLTAA 281

Query: 227 FPGSEVKEMEVKGR---NLSEGIPRSFTISSNEILEALTD-PLNNIVSAVKNALEQTPPE 282
               E    E       NLS G      + + E+  +++   L   +   + AL     +
Sbjct: 282 RQAKETLSRETSATIELNLSSGQAVQLAL-TREVFASISQGLLARTLLPTRKALR----D 336

Query: 283 LGADIAE-KGMMLTGGGALLRDLDRLLMEETGLPVIVAEDPLTCVVRGSGM 332
            G  ++E  G++L GG   +  +   + +  G P +   DP   V  G+ M
Sbjct: 337 AGLGVSEIDGVVLVGGSTRMPQVRAAVADFFGQPPLTDLDPDQVVALGAAM 387


>gi|300312439|ref|YP_003776531.1| molecular chaperone protein
           [Herbaspirillum seropedicae SmR1]
          Length = 621

 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 5/97 (5%)

Query: 112 IICVPCGSTQVERRAIRESALGAGASQVYLIEEPMAAAIGSGLPVSDATGSMVVDIGGGT 171
           +I VP      +R+A +++A  AG + + L+ EP AAAI  GL  S      V D+GGGT
Sbjct: 152 VITVPAYFDDAQRQATKDAAQLAGLNVLRLLNEPTAAAIAYGLDNSSEGVFAVYDLGGGT 211

Query: 172 TEVGIISLGGMVYK-----GSVRVGGDKFDEAIVNYI 203
            ++ I+ L   V++     G   +GGD FD  +  +I
Sbjct: 212 FDISILKLTRGVFEVLATGGDSALGGDDFDHRLFCWI 248


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.137    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,074,387
Number of extensions: 46963
Number of successful extensions: 193
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 3
Length of query: 347
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 261
Effective length of database: 1,212,660
Effective search space: 316504260
Effective search space used: 316504260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)