BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0373.p
         (503 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313937|ref|YP_003778029.1| hypothetical protein Hsero_4655...  1019   0.0  

>gi|300313937|ref|YP_003778029.1| hypothetical protein Hsero_4655
           [Herbaspirillum seropedicae SmR1]
          Length = 503

 Score = 1019 bits (2635), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/503 (99%), Positives = 502/503 (99%)

Query: 1   MKPTFVIARMNHETNTFSPIPTPLEAFAPQWDDDAYRDQKGARTAMGAFLELAEQAGAQI 60
           MKPTFVIARMNHETNTFSPIPTPLEAFAPQWDD AYRDQKGARTAMGAFLELAEQAGAQI
Sbjct: 1   MKPTFVIARMNHETNTFSPIPTPLEAFAPQWDDAAYRDQKGARTAMGAFLELAEQAGAQI 60

Query: 61  VTPLAAWANPSAAVAADAYTLMCDAIVRAIEQGCDAILLDLHGAMVAENAEDGEGALLER 120
           VTPLAAWANPSAAVAADAYTLMCDAIVRAIEQGCDAILLDLHGAMVAENAEDGEGALLER
Sbjct: 61  VTPLAAWANPSAAVAADAYTLMCDAIVRAIEQGCDAILLDLHGAMVAENAEDGEGALLER 120

Query: 121 IRRVAPHTPMAVALDLHGNVTQKMVTHADVIVSFKTYPHIDMFETGEHAGRLLLARLRGR 180
           IRRVAPHTPMAVALDLHGNVTQKMVTHADVIVSFKTYPHIDMFETGEHAGRLLLARLRGR
Sbjct: 121 IRRVAPHTPMAVALDLHGNVTQKMVTHADVIVSFKTYPHIDMFETGEHAGRLLLARLRGR 180

Query: 181 SQPRMAWRQVPVLSATLTSNTSASAMQRAVEAAKAAEQEPGVLAVSVLAGFPLSDFRDAG 240
           SQPRMAWRQVP+LSATLTSNTSASAMQRAVEAAKAAEQEPGVLAVSVLAGFPLSDFRDAG
Sbjct: 181 SQPRMAWRQVPMLSATLTSNTSASAMQRAVEAAKAAEQEPGVLAVSVLAGFPLSDFRDAG 240

Query: 241 MSVVVVTEDDAAQADAVAARIARQIWAERADFVYHSPPLAQSLAQARQLRQGPGQGPVLL 300
           MSVVVVTEDDAAQADAVAARIARQIWAERADFVYHSPPLAQSLAQARQLRQGPGQGP+LL
Sbjct: 241 MSVVVVTEDDAAQADAVAARIARQIWAERADFVYHSPPLAQSLAQARQLRQGPGQGPMLL 300

Query: 301 LDHSDNVMSGGTCNTMDVLEAALQEGLEGIAVGPVSDPEAVAQLVEAGLGATVTLAVGNK 360
           LDHSDNVMSGGTCNTMDVLEAALQEGLEGIAVGPVSDPEAVAQLVEAGLGATVTLAVGNK
Sbjct: 301 LDHSDNVMSGGTCNTMDVLEAALQEGLEGIAVGPVSDPEAVAQLVEAGLGATVTLAVGNK 360

Query: 361 VDLAAQGITKTPPVYTGKVVAITDGRFTVTGPIYTGSHLQMGRSVLFDIGAARIVITEER 420
           VDLAAQGITKTPPVYTGKVVAITDGRFTVTGPIYTGSHLQMGRSVLFDIGAARIVITEER
Sbjct: 361 VDLAAQGITKTPPVYTGKVVAITDGRFTVTGPIYTGSHLQMGRSVLFDIGAARIVITEER 420

Query: 421 VEPYDLGVFTSLGLDPAQQSFLILKSRMYCRPVFAPISRALVECDSDSGGPTSANFRLFP 480
           VEPYDLGVFTSLGLDPAQQSFLILKSRMYCRPVFAPISRALVECDSDSGGPTSANFRLFP
Sbjct: 421 VEPYDLGVFTSLGLDPAQQSFLILKSRMYCRPVFAPISRALVECDSDSGGPTSANFRLFP 480

Query: 481 IKKVRRPIYPLDADMRWEGGAGA 503
           IKKVRRPIYPLDADMRWEGGAGA
Sbjct: 481 IKKVRRPIYPLDADMRWEGGAGA 503


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,412,409
Number of extensions: 53815
Number of successful extensions: 224
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 414
Effective length of database: 1,198,455
Effective search space: 496160370
Effective search space used: 496160370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)