BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0371.p (234 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t... 472 e-134 gi|300312951|ref|YP_003777043.1| amino acid ABC transporter ATPa... 229 1e-61 gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPa... 217 6e-58 gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 214 7e-57 gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 205 2e-54 >gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 472 bits (1214), Expect = e-134, Method: Compositional matrix adjust. Identities = 234/234 (100%), Positives = 234/234 (100%) Query: 1 MILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPVQGRVL 60 MILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPVQGRVL Sbjct: 1 MILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPVQGRVL 60 Query: 61 FEGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTMAARKESAWGLEEIYAIFPRL 120 FEGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTMAARKESAWGLEEIYAIFPRL Sbjct: 61 FEGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTMAARKESAWGLEEIYAIFPRL 120 Query: 121 KERRKNGGGQLSGGEQQMLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQIRQIKATG 180 KERRKNGGGQLSGGEQQMLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQIRQIKATG Sbjct: 121 KERRKNGGGQLSGGEQQMLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQIRQIKATG 180 Query: 181 MSIILVEQNLEVCTQLADRHYIVEQGRIVYHGSNAEFLADEGVKDRYLGVNLAA 234 MSIILVEQNLEVCTQLADRHYIVEQGRIVYHGSNAEFLADEGVKDRYLGVNLAA Sbjct: 181 MSIILVEQNLEVCTQLADRHYIVEQGRIVYHGSNAEFLADEGVKDRYLGVNLAA 234 >gi|300312951|ref|YP_003777043.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 236 Score = 229 bits (585), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 118/233 (50%), Positives = 167/233 (71%), Gaps = 4/233 (1%) Query: 2 ILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPVQGRVLF 61 +L+VE + G YG S +L G+ +QV GEVVTLLGRNG GKTTTL++I+G+ P G V F Sbjct: 4 LLEVEGLTGGYGASQVLFGIDMQVREGEVVTLLGRNGMGKTTTLRTILGLNRPTGGVVRF 63 Query: 62 EGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLT-MAARK---ESAWGLEEIYAIF 117 G+ I + IA RG+ +VPE R IFK L+VEENL+ AAR+ ++ W LE+IY F Sbjct: 64 RGEAIHSASADAIARRGMAIVPEGRQIFKNLSVEENLSAFAARRNGRDNPWTLEKIYQQF 123 Query: 118 PRLKERRKNGGGQLSGGEQQMLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQIRQIK 177 PRLKERR NGGGQLSGGEQQMLAI RALMT+P +L+LDE EGLAP++ +EI + ++ ++ Sbjct: 124 PRLKERRHNGGGQLSGGEQQMLAIGRALMTNPHLLILDEATEGLAPLVREEIWSCLKALR 183 Query: 178 ATGMSIILVEQNLEVCTQLADRHYIVEQGRIVYHGSNAEFLADEGVKDRYLGV 230 G++II++++ ++ AD+H I+E+G++V+ G +A+ + D+YL V Sbjct: 184 EYGLTIIVIDKYIKRLIGFADQHTILEKGKVVWQGDSAQLSVQTELWDQYLSV 236 >gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 217 bits (553), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 113/233 (48%), Positives = 154/233 (66%), Gaps = 3/233 (1%) Query: 1 MILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPVQGRVL 60 ++LQ+ D+ +YG+SHIL V+L V GEVVTLLGRNGAG+TTTL+SI+G+V +G + Sbjct: 10 LVLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGTRKGSIK 69 Query: 61 FEGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTM---AARKESAWGLEEIYAIF 117 GQ L ++KIA GV PE RGIF L+ EENL + ++ + ++EIY +F Sbjct: 70 INGQETINLATHKIAHHGVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGMSIDEIYEMF 129 Query: 118 PRLKERRKNGGGQLSGGEQQMLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQIRQIK 177 P LKERR + G +LSGGEQQMLA+AR L T R+L+LDE EGLAPVIV + I +K Sbjct: 130 PNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALARMITTLK 189 Query: 178 ATGMSIILVEQNLEVCTQLADRHYIVEQGRIVYHGSNAEFLADEGVKDRYLGV 230 A G +I++VEQN LADR Y++E G+IV ++++ A + LGV Sbjct: 190 AKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAKMQTLNELLGV 242 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 214 bits (544), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 112/233 (48%), Positives = 152/233 (65%), Gaps = 4/233 (1%) Query: 1 MILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPVQGRVL 60 M+LQ + VH +YG L GVSL V+ GE+VTL+G NGAGKTT L ++ G GRV+ Sbjct: 1 MMLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVI 60 Query: 61 FEGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTMAARKESA----WGLEEIYAI 116 FEGQ I+ L +++I RG+ + PE R +F LTV ENL M A S G+E ++ + Sbjct: 61 FEGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQGIEYVFGL 120 Query: 117 FPRLKERRKNGGGQLSGGEQQMLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQIRQI 176 FPRLKER G +SGGEQQMLAI RALM+ PR+L+LDEP GLAP+++ +I IR I Sbjct: 121 FPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTI 180 Query: 177 KATGMSIILVEQNLEVCTQLADRHYIVEQGRIVYHGSNAEFLADEGVKDRYLG 229 + +G+++ LVEQN +ADR Y++E G +V + A LA+ V+ YLG Sbjct: 181 RESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 233 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 205 bits (522), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 105/235 (44%), Positives = 158/235 (67%), Gaps = 7/235 (2%) Query: 2 ILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPP--VQGRV 59 IL+V+ + YG ++G+ L+V+ GE+VTL+G NGAGKTTTLK+I G +P V+G + Sbjct: 5 ILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVEGHI 64 Query: 60 LFEGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTMAA-----RKESAWGLEEIY 114 + GQ + G S+++ + +VPE RG+F ++++ENL M A + + A +++ + Sbjct: 65 EYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADIDKWF 124 Query: 115 AIFPRLKERRKNGGGQLSGGEQQMLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQIR 174 A+FPRLKER G LSGGEQQMLA+ARALM+HP++L+LDEP GL+P++V++I IR Sbjct: 125 AVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEVIR 184 Query: 175 QIKATGMSIILVEQNLEVCTQLADRHYIVEQGRIVYHGSNAEFLADEGVKDRYLG 229 + A G++I+LVEQN ++ + A R Y++E G I G + L D VK YLG Sbjct: 185 NVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLG 239 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.139 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 738,840 Number of extensions: 30708 Number of successful extensions: 491 Number of sequences better than 1.0e-08: 123 Number of HSP's gapped: 310 Number of HSP's successfully gapped: 137 Length of query: 234 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 152 Effective length of database: 1,231,600 Effective search space: 187203200 Effective search space used: 187203200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)