BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0370.p (255 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC t... 519 e-149 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 187 8e-49 gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPa... 185 4e-48 gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC t... 179 2e-46 gi|300312952|ref|YP_003777044.1| amino acid ABC transporter ATPa... 168 4e-43 >gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 519 bits (1337), Expect = e-149, Method: Compositional matrix adjust. Identities = 254/255 (99%), Positives = 255/255 (100%) Query: 1 MSRPILQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEG 60 MSRPILQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEG Sbjct: 1 MSRPILQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEG 60 Query: 61 SILVEGEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGRAPLAALNPWKRA 120 SILVEGEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGRAPLAALNPWKRA Sbjct: 61 SILVEGEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGRAPLAALNPWKRA 120 Query: 121 EQFSAACALADELLAQLSLQAVAQRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGM 180 EQFSAACALADELLA+LSLQAVAQRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGM Sbjct: 121 EQFSAACALADELLARLSLQAVAQRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGM 180 Query: 181 GIDDIAEMKQLIHGLRRDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSDER 240 GIDDIAEMKQLIHGLRRDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSDER Sbjct: 181 GIDDIAEMKQLIHGLRRDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSDER 240 Query: 241 VRRAYLGSMITGGKA 255 VRRAYLGSMITGGKA Sbjct: 241 VRRAYLGSMITGGKA 255 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 187 bits (475), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 100/253 (39%), Positives = 159/253 (62%), Gaps = 10/253 (3%) Query: 3 RPILQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSI 62 + +L+ N++ R+G AV+G++L ++ V ++IGPNGAGKTT+F+ ++G T G I Sbjct: 6 KTMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRPTSGEI 65 Query: 63 LVEGEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGRAPLAALN------P 116 +++G +A P ++ Q+GL R+FQ LF +++V ENL +A + L+ Sbjct: 66 MLDGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTPA 125 Query: 117 WKRAEQFSAACALADELLAQLSLQAVAQRACAELSHGQQRRLEVGMAMAGRPKVIFLDEP 176 ++++EQ A A L QL L A+A R LS+G QRR+E+ M +P+++ LDEP Sbjct: 126 YRKSEQ--EALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLDEP 183 Query: 177 TSGMGIDDIAEMKQLIHGLRRDY--TVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAE 234 +G+ + E+ QLI LRR++ V+LIEH+M ++M ISDRI VM+ G+ + G P + Sbjct: 184 AAGLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQ 243 Query: 235 IRSDERVRRAYLG 247 +RSDERV +AYLG Sbjct: 244 VRSDERVIKAYLG 256 >gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 185 bits (469), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 94/248 (37%), Positives = 151/248 (60%), Gaps = 1/248 (0%) Query: 1 MSRPILQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEG 60 M+ IL+ N+TK + FTAV+ + L IE G +H++IGPNGAGKTT F+ LT T G Sbjct: 1 MTDVILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSG 60 Query: 61 SILVEGEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGRAPLAALNPWKRA 120 IL G ++ + ++G+ RSFQ++++FP++SV EN+R+ Q R + + WK Sbjct: 61 QILFNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQ-RKLGTSFHFWKNG 119 Query: 121 EQFSAACALADELLAQLSLQAVAQRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGM 180 E A +LL ++ L + A +L +G++R LE+ +A P+++ LDEPT GM Sbjct: 120 ESLKQLDERAMQLLEEVDLTSFAHTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGM 179 Query: 181 GIDDIAEMKQLIHGLRRDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSDER 240 G +D+ + LI + T++++EHNM ++ I DRI+V+Q G +LA+G E+ + + Sbjct: 180 GHEDVDRVTALIKKVSAGRTILMVEHNMSVIAGICDRISVLQRGALLAEGSYEEVSRNPQ 239 Query: 241 VRRAYLGS 248 V AY+GS Sbjct: 240 VMEAYMGS 247 >gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 179 bits (453), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 96/245 (39%), Positives = 151/245 (61%), Gaps = 7/245 (2%) Query: 6 LQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSILVE 65 L+ ++KR+G F A + I+L G H++IGPNGAGKTT + LTG + G + Sbjct: 12 LRTEGLSKRWGSFVANSDISLTFAPGARHALIGPNGAGKTTFINLLTGGFAPSSGRVWFG 71 Query: 66 GEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGRAPLAALNPWKRAEQFSA 125 GE++ LP + RV++G+ R+FQ+ +LF L+V E++ LA Q R L +K + ++ Sbjct: 72 GEDITALPQHARVKRGMTRTFQINTLFAGLTVLESVVLAIQERRGLQ----YKWYQTVAS 127 Query: 126 ACALADE---LLAQLSLQAVAQRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGMGI 182 + DE LLA L L A L++G+QR +E+ +A+A +PKV+ LDEP +G+ Sbjct: 128 QTEVVDEAMALLASLKLAQEANSLTRNLAYGKQRLVEIALALATQPKVLLLDEPAAGIPS 187 Query: 183 DDIAEMKQLIHGLRRDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSDERVR 242 + E+ ++I L R+ T+V IEH+M +V ++RITV+ G++L +G PAEI +D RV+ Sbjct: 188 AESRELFEVIAQLPREVTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEIAADPRVK 247 Query: 243 RAYLG 247 YLG Sbjct: 248 EVYLG 252 >gi|300312952|ref|YP_003777044.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 168 bits (425), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 98/237 (41%), Positives = 145/237 (61%), Gaps = 1/237 (0%) Query: 11 VTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSILVEGEEVA 70 + K YG A + L+I AG VH++IGPNGAGKTTL L+G G I + G+ + Sbjct: 15 LKKNYGGLAATRDVDLEIAAGQVHAIIGPNGAGKTTLLSLLSGALAADAGEIHLFGQPMH 74 Query: 71 HLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGRAPLAALNPWKRAEQFSAACALA 130 RV GL RSFQ+TS+F LSV ENL++A Q R + + + AA A Sbjct: 75 GHAEQARVAAGLVRSFQITSVFDELSVLENLQVAVQ-RGQHRSYGFFHASAGDRAAREAA 133 Query: 131 DELLAQLSLQAVAQRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGMGIDDIAEMKQ 190 + ++ L+ V + ++LSHG +RRL+VG+A+A P+V+ +DEP +GMG ++ +M Sbjct: 134 MTVARRVGLEKVVHQLSSQLSHGARRRLDVGLAIACSPRVLLMDEPMAGMGHEESGDMIA 193 Query: 191 LIHGLRRDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSDERVRRAYLG 247 LI L+ + TVVL+EH+M+ V ++DR+TV+ G +LA G EIR++ V+ AYLG Sbjct: 194 LIQSLKEELTVVLVEHDMEAVFALADRMTVLVQGAVLATGSVDEIRANAEVKLAYLG 250 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.134 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 707,164 Number of extensions: 26471 Number of successful extensions: 520 Number of sequences better than 1.0e-08: 127 Number of HSP's gapped: 289 Number of HSP's successfully gapped: 140 Length of query: 255 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 172 Effective length of database: 1,226,865 Effective search space: 211020780 Effective search space used: 211020780 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)