BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0368.p (288 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313932|ref|YP_003778024.1| branched-chain amino acid ABC t... 551 e-158 gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC t... 194 7e-51 gi|300312954|ref|YP_003777046.1| amino acid ABC transporter perm... 157 8e-40 gi|300313286|ref|YP_003777378.1| branched-chain amino acid ABC t... 135 3e-33 gi|300310992|ref|YP_003775084.1| branched-chain aminoacid ABC tr... 132 3e-32 >gi|300313932|ref|YP_003778024.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 288 Score = 551 bits (1419), Expect = e-158, Method: Compositional matrix adjust. Identities = 288/288 (100%), Positives = 288/288 (100%) Query: 1 MNIYLLQIANGVGIGMLYFLLAVGLSIVFGLLRFVNFSHGAFFLLGAYLCFQVTDLGLGF 60 MNIYLLQIANGVGIGMLYFLLAVGLSIVFGLLRFVNFSHGAFFLLGAYLCFQVTDLGLGF Sbjct: 1 MNIYLLQIANGVGIGMLYFLLAVGLSIVFGLLRFVNFSHGAFFLLGAYLCFQVTDLGLGF 60 Query: 61 WWSLLIAPLVVGLFAWIVERFVLRHVYALPHHFHILFTVGMALVIQEAVISTWGPLGNNV 120 WWSLLIAPLVVGLFAWIVERFVLRHVYALPHHFHILFTVGMALVIQEAVISTWGPLGNNV Sbjct: 61 WWSLLIAPLVVGLFAWIVERFVLRHVYALPHHFHILFTVGMALVIQEAVISTWGPLGNNV 120 Query: 121 APPDLLQGVVMWGGFVYPKYRLFVIGLTAVMALLLWWVLEGTRLGSIVRAGSESTEMVSL 180 APPDLLQGVVMWGGFVYPKYRLFVIGLTAVMALLLWWVLEGTRLGSIVRAGSESTEMVSL Sbjct: 121 APPDLLQGVVMWGGFVYPKYRLFVIGLTAVMALLLWWVLEGTRLGSIVRAGSESTEMVSL 180 Query: 181 LGLNINRIFSLVFALGAATAGLAGALAAPIRGADPFMGVEALGIAFVVVVIGGLGSFWGA 240 LGLNINRIFSLVFALGAATAGLAGALAAPIRGADPFMGVEALGIAFVVVVIGGLGSFWGA Sbjct: 181 LGLNINRIFSLVFALGAATAGLAGALAAPIRGADPFMGVEALGIAFVVVVIGGLGSFWGA 240 Query: 241 LIGGILVGIVQSVMSTVWSEGAHLMIYVAMAAVMLLRPNGLLGRPGAA 288 LIGGILVGIVQSVMSTVWSEGAHLMIYVAMAAVMLLRPNGLLGRPGAA Sbjct: 241 LIGGILVGIVQSVMSTVWSEGAHLMIYVAMAAVMLLRPNGLLGRPGAA 288 >gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 294 Score = 194 bits (493), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 102/271 (37%), Positives = 173/271 (63%), Gaps = 1/271 (0%) Query: 15 GMLYFLLAVGLSIVFGLLRFVNFSHGAFFLLGAYLCFQ-VTDLGLGFWWSLLIAPLVVGL 73 G Y +L++GL+++FGLL +NF+HG ++LGA+L + ++ LGL +W L++AP++VG Sbjct: 22 GSFYAMLSLGLAVIFGLLNVINFAHGTLYMLGAFLAWMGLSYLGLNYWVMLIVAPILVGA 81 Query: 74 FAWIVERFVLRHVYALPHHFHILFTVGMALVIQEAVISTWGPLGNNVAPPDLLQGVVMWG 133 F ++E+ +LR +Y L H + +L T G+ L+I+ S +G G + PDLLQG G Sbjct: 82 FGIVIEKTMLRWLYKLDHLYGLLLTFGITLMIEGIFRSIYGVSGQPYSVPDLLQGATNLG 141 Query: 134 GFVYPKYRLFVIGLTAVMALLLWWVLEGTRLGSIVRAGSESTEMVSLLGLNINRIFSLVF 193 V P YR +V+ + ++ W+V+E TRLG+ +RAG+E+ ++V G+N+ + +L + Sbjct: 142 FMVLPNYRAWVVVASLIVCFATWFVIEKTRLGAYLRAGTENPKLVEAFGINVPLMVTLTY 201 Query: 194 ALGAATAGLAGALAAPIRGADPFMGVEALGIAFVVVVIGGLGSFWGALIGGILVGIVQSV 253 G A A AG LAAP+ P MG + F VVVIGG+GS G++I G+++G+++ + Sbjct: 202 GFGVALAAFAGVLAAPVIQVSPLMGSNLIITVFAVVVIGGMGSILGSIITGLVLGLIEGL 261 Query: 254 MSTVWSEGAHLMIYVAMAAVMLLRPNGLLGR 284 + E + ++++ MA V+++RP GL G+ Sbjct: 262 TRVFYPELSATVVFIIMAIVLMVRPAGLFGK 292 >gi|300312954|ref|YP_003777046.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 304 Score = 157 bits (398), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 106/297 (35%), Positives = 163/297 (54%), Gaps = 17/297 (5%) Query: 2 NIYLLQIANGVGIGMLYFLLAVGLSIVFGLLRFVNFSHGAFFLLGAYLCFQVTDLGLGFW 61 N+ Q+ N + G++ FL+A GL+++FG++ FVN +HG+FF++GAY+ V FW Sbjct: 3 NLIFEQVLNSLQFGVMLFLIASGLTLIFGVMNFVNLAHGSFFMIGAYVAAVVAGASGSFW 62 Query: 62 WSLLIAPLVVGLFAWIVERFVLRHVYALPHHFHILFTVGMALVIQEAVISTWGPLGNNVA 121 LL+A +++E V R +Y H +L T L+ + V WGP + Sbjct: 63 LGLLVALPATAALGFLLEWVVFRRLYQKDHMVQVLATFAFILIFNDGVRMIWGPQPLPLN 122 Query: 122 PPDLLQGVVMWGGFVYPKYRLFVIGLTAVMALLLWWVLEGTRLGSIVRAGSESTEMVSLL 181 P G V G Y YRL V+ + V+A+ L++++ TR+G VRAG+ + EMV+ + Sbjct: 123 MPAAFAGPVNLFGLPYSSYRLLVMAVGVVVAIALYFLINRTRIGMWVRAGANNLEMVTAM 182 Query: 182 GLNINRIFSLVFALGAATAGLAGALAAPIRGADPFMGVEALGIAFVVVVIGGLGSFWGAL 241 G+NI +F LVF+ G A LAG + P+ MG + L +AFVVVVIGG+GS GA Sbjct: 183 GINIRLLFRLVFSFGLLLAALAGIMLGPLVAVQAGMGDDVLILAFVVVVIGGIGSVPGAA 242 Query: 242 IGGILVGIVQSV-----------------MSTVWSEGAHLMIYVAMAAVMLLRPNGL 281 IG ++VG+V ++ ++V +MIY+ M AV+ RP+GL Sbjct: 243 IGALIVGVVDTLGRSLLPQLFALFLSADAAASVGPALGSMMIYLVMIAVLFWRPSGL 299 >gi|300313286|ref|YP_003777378.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 288 Score = 135 bits (341), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 91/278 (32%), Positives = 155/278 (55%), Gaps = 1/278 (0%) Query: 10 NGVGIGMLYFLLAVGLSIVFGLLRFVNFSHGAFFLLGAYLCFQVTD-LGLGFWWSLLIAP 68 +G+ G L FL++VGLS+ G++ F+N +HGAF +LG Y+C + + +G+ F +L +A Sbjct: 11 DGIAYGSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGYVCVTLLNGMGVPFLATLPLAF 70 Query: 69 LVVGLFAWIVERFVLRHVYALPHHFHILFTVGMALVIQEAVISTWGPLGNNVAPPDLLQG 128 + + ++ER + R +Y H +LF++G+ + WGP V PD L+G Sbjct: 71 IAAAIVGLVLERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQWGPTQQPVVLPDWLRG 130 Query: 129 VVMWGGFVYPKYRLFVIGLTAVMALLLWWVLEGTRLGSIVRAGSESTEMVSLLGLNINRI 188 + G YR+F+IG+ ++ + L ++E TR G+ +RA ++ + LG+N++R+ Sbjct: 131 QISLLGLEVGAYRVFLIGVVVIVTVALGLLIERTRFGAQIRASVDNQVAAAGLGINVSRV 190 Query: 189 FSLVFALGAATAGLAGALAAPIRGADPFMGVEALGIAFVVVVIGGLGSFWGALIGGILVG 248 FSL FALG+ AGL G L + G DP V+ + +VV +GG G+ G L+ +++G Sbjct: 191 FSLTFALGSGLAGLGGGLGIDVLGLDPTFPVKYMVYFLLVVAVGGAGTIKGPLLAALILG 250 Query: 249 IVQSVMSTVWSEGAHLMIYVAMAAVMLLRPNGLLGRPG 286 + E +IY M +++L P GL+ R G Sbjct: 251 VFDVAGKYYVPEIGAFVIYGLMVVLLILFPAGLMRRRG 288 >gi|300310992|ref|YP_003775084.1| branched-chain aminoacid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 308 Score = 132 bits (332), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 90/295 (30%), Positives = 165/295 (55%), Gaps = 18/295 (6%) Query: 7 QIANGVGIGMLYFLLAVGLSIVFGLLRFVNFSHGAFFLLGAYL-CFQVTDLGLGFWWSL- 64 Q+ NG+ +G +Y L+A+G ++V+G++ +NF+HG +++ +Y+ +T +G+ + L Sbjct: 11 QLVNGLSLGAIYALIAIGYTMVYGIIGMINFAHGEIYMIASYVGLVTLTAIGVQSGYPLP 70 Query: 65 -------LIAPLVVGLFAWIVERFVLRHVYALPHHFHILFTVGMALVIQEAVISTWGPLG 117 +++ LV GL+ W VER R + P ++ +GM++ +Q V G Sbjct: 71 LLLGGALIVSVLVTGLYGWTVERVAYRPLRGGPRLVPLISAIGMSIFLQNYV--QIGQGA 128 Query: 118 NNVAPPDLLQGVV---MWGGFVY--PKYRLFVIGLTAVMALLLWWVLEGTRLGSIVRAGS 172 +++ P L+ G + M F P R+ ++G+T V+ + L + +R+G RA + Sbjct: 129 RDMSVPVLISGALEFQMGSDFTVTIPYSRMVIVGVTLVLMVALTLFIARSRMGRACRACA 188 Query: 173 ESTEMVSLLGLNINRIFSLVFALGAATAGLAGALAAPIRGA-DPFMGVEALGIAFVVVVI 231 E M +LLG++ N++ S F LGA A + G L A G +P++G A AF V+ Sbjct: 189 EDMGMANLLGIDTNKVISFTFVLGAMLAAVGGVLIALTIGKLNPYIGFIAGIKAFTAAVL 248 Query: 232 GGLGSFWGALIGGILVGIVQSVMS-TVWSEGAHLMIYVAMAAVMLLRPNGLLGRP 285 GG+GS GA++GG+L+G+ ++ + + SE ++ + + ++L RP GLLG+P Sbjct: 249 GGIGSIPGAMLGGVLLGLAETFAAGYLPSEYKDVVSFGLLVLILLFRPTGLLGKP 303 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.331 0.147 0.466 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 789,273 Number of extensions: 32237 Number of successful extensions: 276 Number of sequences better than 1.0e-08: 30 Number of HSP's gapped: 258 Number of HSP's successfully gapped: 31 Length of query: 288 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 204 Effective length of database: 1,222,130 Effective search space: 249314520 Effective search space used: 249314520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)