BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0359.p
         (426 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313569|ref|YP_003777661.1| NADH-ubiquinone oxidoreductase ...    77   3e-15
gi|300309817|ref|YP_003773909.1| UDP-glucose 4-epimerase [Herbas...    57   2e-09

>gi|300313569|ref|YP_003777661.1| NADH-ubiquinone oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 322

 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 120/271 (44%), Gaps = 17/271 (6%)

Query: 2   NILVIGATGLIGSHTLAALQRTGHH--AIGASRKKPAGALATWKELDI--GSLTDAQAWL 57
            ILVIG +G IG+  +  L  +  +   +   R + A  L     + +   ++ D  A  
Sbjct: 5   KILVIGGSGFIGTRLVELLGSSTDYRVMVPTRRYERAKHLLVSPVVTVVQANIHDDAALA 64

Query: 58  PHLEGIDAVINCVGIIRESRPN--------DFQRLHQQMPIALFAACEQVGVSRVVQVSA 109
             +   D VIN VGI+ +SRP         DF+R H  +P  + AAC Q GV R + +SA
Sbjct: 65  RLVAEADVVINLVGIL-QSRPARGGAAYGPDFERQHVLLPRRIVAACVQQGVKRYLHMSA 123

Query: 110 LGSQMHASTAYWRSKGAADADLLQR-RLSATVVRPSLVYGDEGASSRVFTMMASLPLTIM 168
           L +     + Y RSK A + + L    L   + RPS+V+G+      +F  +  +   ++
Sbjct: 124 LCADAKGPSMYLRSKAAGEQEALSAPSLDVAIFRPSVVFGEGDNFLNMFAGLNRM-FPVI 182

Query: 169 PMAH-SALVQPIHVDDLADVLVKLLTGTSPAPRELAAVGPRAMTIAAYIEALRAGMAWPP 227
           P+    A  QP++V D+A   V  L       +     GP+  T+   +  L    +  P
Sbjct: 183 PLGSPDARFQPVYVGDVAQAFVNALALPRLGGKVFELGGPKQYTLRELVR-LSGWYSGHP 241

Query: 228 GRVLALPALPARLLARCAELLPASAFTLDSL 258
             ++ LP     L A   E LP    + D++
Sbjct: 242 RPIVGLPDALGWLQAFALEHLPGKLMSRDNV 272


>gi|300309817|ref|YP_003773909.1| UDP-glucose 4-epimerase
           [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 125/279 (44%), Gaps = 39/279 (13%)

Query: 1   MNILVIGATGLIGSHTLAALQRTGHHAIGASRKKPAGALATWKELD---IGSLTDAQAWL 57
           M+ILV GA+G +G   L+ L   G H +  + +  +  +   + ++   I  L     W 
Sbjct: 1   MHILVTGASGFVGRALLSRLDSEGQHLLRGAFRPSSETVMDRERIERTVISGLDPETDWS 60

Query: 58  PHLEGIDAVINC---VGIIRESRPN---DFQRLHQQMPIALFAACEQVGVSRVVQVSAL- 110
             L  I+AV++C   V ++ E+  +   +F+R++ +  +AL    +Q GV R + +S++ 
Sbjct: 61  AALHNIEAVVHCAARVHVMNETAGDPLAEFRRINLEGSLALARQAQQAGVQRFIFLSSIK 120

Query: 111 --GSQMH------------ASTAYWRSKGAADADLLQ----RRLSATVVRPSLVYGDEGA 152
             G Q               +  Y  SK  A+  LL+     ++   ++RP LVYG  G 
Sbjct: 121 VNGEQTSLGRPFTADDKPAPTDPYGISKMEAEQALLELGRTGKMQVVIIRPVLVYG-PGV 179

Query: 153 SSRVFTMM----ASLPLTIMPMAHSALVQPIHVDDLADVLVKLLTGTSPAPRELAAVGPR 208
            +   +MM      +PL +  + H+     + +D+L D++   L   + A +   A    
Sbjct: 180 KANFLSMMRWLDKGMPLPLGGITHNRR-SLVALDNLVDLITVCLAHPAAAGQVFLASDGE 238

Query: 209 AMTIAAYIEALRAGMAWPPGRVLALPA----LPARLLAR 243
            ++    ++ L   +   P  +L +PA    L ARL+ +
Sbjct: 239 DLSTTGMLQRLGRALDKSP-TLLPVPASWLTLAARLMGK 276


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.135    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,358,498
Number of extensions: 56764
Number of successful extensions: 273
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 3
Length of query: 426
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 338
Effective length of database: 1,203,190
Effective search space: 406678220
Effective search space used: 406678220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)