BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0357.p (601 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313926|ref|YP_003778018.1| methyl-accepting chemotaxis tra... 935 0.0 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 398 e-112 gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis tra... 345 8e-96 gi|300313067|ref|YP_003777159.1| methyl-accepting chemotaxis tra... 315 9e-87 gi|300312818|ref|YP_003776910.1| methyl-accepting chemotaxis pro... 313 2e-86 >gi|300313926|ref|YP_003778018.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 582 Score = 935 bits (2416), Expect = 0.0, Method: Compositional matrix adjust. Identities = 473/479 (98%), Positives = 474/479 (98%), Gaps = 1/479 (0%) Query: 1 MTVGRKLGLAFLCVVVVALVGSSLSLLNFNRLEGASAMNIHTYQVMGKADDMLLNMVNIE 60 MTVGRKLGLAFLCVVVVALVGSSLSLLNFNRLE ASAMNIHTYQVMGKADDMLLNMVNIE Sbjct: 5 MTVGRKLGLAFLCVVVVALVGSSLSLLNFNRLEDASAMNIHTYQVMGKADDMLLNMVNIE 64 Query: 61 TGIRGYVASGNEAFLDPYKGGRKDFKVAFDDAKSLTADNPVQQKRLAEMQELSNKIEEID 120 TGIRGYVASGNEAFLDPYKGGRKDFKVAFDDAKSLTADNPVQQKRLAEMQELSNKIEEID Sbjct: 65 TGIRGYVASGNEAFLDPYKGGRKDFKVAFDDAKSLTADNPVQQKRLAEMQELSNKIEEID 124 Query: 121 QNLIKLRKEANASGSPQALHTYFGATHDKIFMDRFRVVQKEFVDAEESLLKERGELVRSL 180 QNLIKLRKEANASGS QAL TYFGATHDKIFMDRFRVVQKEFVDAEESLLKERGELVRSL Sbjct: 125 QNLIKLRKEANASGSQQALQTYFGATHDKIFMDRFRVVQKEFVDAEESLLKERGELVRSL 184 Query: 181 SKSTLIVMIAAGALTVLLAIGAGLLITRSIVNALGGEPGAAADVAQQIAAGDLTVAVPLK 240 SKSTLIVMIAAGALTVLLAIGAGLLITRSI+NALGGEPGAAADVAQQIAAGDLTVAVPLK Sbjct: 185 SKSTLIVMIAAGALTVLLAIGAGLLITRSIINALGGEPGAAADVAQQIAAGDLTVAVPLK 244 Query: 241 PNDSHSLMASLGSMREQLTTIVRGIQTSGESISVAANEIATGNTDLSQRTEEQAASLEET 300 PNDSHSLMASLGSMREQLTTIVRGIQTSGESISVAANEIATGNTDLSQRTEEQAASLEET Sbjct: 245 PNDSHSLMASLGSMREQLTTIVRGIQTSGESISVAANEIATGNTDLSQRTEEQAASLEET 304 Query: 301 ASSMEELTSTVRQNSDNARQANTLAENASTLAAKGGEVVSRVIDTMNEISDSSSKVSDII 360 ASSMEELTSTVRQNSDNARQANTLAENASTLAAKGGEVVSRVIDTMNEISDSSSKVSDII Sbjct: 305 ASSMEELTSTVRQNSDNARQANTLAENASTLAAKGGEVVSRVIDTMNEISDSSSKVSDII 364 Query: 361 TVIEGIG-QTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKDVKDLITLSG 419 TVIEGI QTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKDVKDLITLSG Sbjct: 365 TVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKDVKDLITLSG 424 Query: 420 ERVERGTHLVGEAGQTINEVVQAVRNVTDIMNEITAASSEQTTGIEQVNQALSQMDQVT 478 ERVERGTHLVGEAGQTINEVVQAVRNVTDIMNEITAASSEQTTGIEQVNQALSQMDQVT Sbjct: 425 ERVERGTHLVGEAGQTINEVVQAVRNVTDIMNEITAASSEQTTGIEQVNQALSQMDQVT 483 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 398 bits (1022), Expect = e-112, Method: Compositional matrix adjust. Identities = 232/483 (48%), Positives = 327/483 (67%), Gaps = 10/483 (2%) Query: 1 MTVGRKLGLAFLCVVVVALVGSSLSLLNFNRLEGASAMNIHTYQVMGKADDMLLNMVNIE 60 + +G +L + F V + ++ S++ NF RL A+ +N+HTY+V + M +++NIE Sbjct: 6 LKIGTRLYMGFGLVAAILVILVSVAYTNFARLGAANELNVHTYEVRAQLRAMAESLINIE 65 Query: 61 TGIRGYVASGNEAFLDPYKGGRKDFKVAFDDAKSLTADNPVQQKRLAEMQELSNK-IEEI 119 TG RG+ SG +A L+PY G FK A + ++LT+DN +QQ+RL E+ + + ++ Sbjct: 66 TGQRGFSLSGIDASLEPYHLGMTTFKTALEKTRTLTSDNTLQQQRLQELSDSEQRWLKSA 125 Query: 120 DQNLIKLRKEANASGSPQ--ALHTYFGATHDKIFMDRFRVVQKEFVDAEESLLKERGELV 177 I+LR+ A G Q A+ + A K MD RV+ + E +LL ER E Sbjct: 126 IDPAIELRR-AVREGREQMAAVVAFEQAGKGKSQMDSMRVLLDDLDRTESALLGERAEEA 184 Query: 178 RSLSKSTLIVMIAAGALTVLLAIGAGLLITRSIVNALGGEPGAAADVAQQIAAGDLTVAV 237 +L T +I GA+ ++LA+ + +I L A +A+++A+GDLT + Sbjct: 185 AALRSVTSTTLIGGGAIALMLAVLLAWWLANNITRPLA----LAVQLARRVASGDLTARI 240 Query: 238 PLKPND-SHSLMASLGSMREQLTTIVRGIQTSGESISVAANEIATGNTDLSQRTEEQAAS 296 ++ D + +L+ +L M E L IV G++ E I+ A++EIATGN DLS RTE+QA+S Sbjct: 241 EVRSRDETGALLGALKDMNESLVRIVSGVRRGTEMIATASSEIATGNLDLSSRTEQQASS 300 Query: 297 LEETASSMEELTSTVRQNSDNARQANTLAENASTLAAKGGEVVSRVIDTMNEISDSSSKV 356 LEETASSMEELTSTV+QN+ NAR+AN +A+ AS +A+ GG VV+RV+DTM EI+DSS K+ Sbjct: 301 LEETASSMEELTSTVQQNTANAREANRMAQAASDIASSGGGVVARVVDTMEEINDSSRKI 360 Query: 357 SDIITVIEGIG-QTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKDVKDLI 415 DII+VI+GI QTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAK++K LI Sbjct: 361 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKALI 420 Query: 416 TLSGERVERGTHLVGEAGQTINEVVQAVRNVTDIMNEITAASSEQTTGIEQVNQALSQMD 475 + S +VE G+ LV EAG T+ E+V++V+ VT+++NEI+AA EQ +GIEQV+QA+ QMD Sbjct: 421 SDSVAKVESGSLLVNEAGDTMREIVESVQRVTNMINEISAAGEEQRSGIEQVSQAVGQMD 480 Query: 476 QVT 478 QVT Sbjct: 481 QVT 483 >gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 345 bits (884), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 194/342 (56%), Positives = 249/342 (72%), Gaps = 8/342 (2%) Query: 150 IFMDRFRVVQKEFVDAEESLLKERGELVRSLS-------KSTLIVMIAAGALTVLLAIGA 202 + + R VQ +++D + L + EL S +S L A +VLLA+ A Sbjct: 148 LLTQKIRPVQAKWLDNLDELGRFEDELNNQASAAADTTYRSILTTTWTLVAGSVLLAVAA 207 Query: 203 GLLITRSIVNALGGEPGAAADVAQQIAAGDLTVAVPLKPNDSHSLMASLGSMREQLTTIV 262 LI RS+++ LGGEP A ++A QIA G+L V++PL D HSLMASL +MR QLT IV Sbjct: 208 AFLIVRSVLHQLGGEPAQAQELAAQIAQGNLAVSIPLAKGDQHSLMASLENMRAQLTRIV 267 Query: 263 RGIQTSGESISVAANEIATGNTDLSQRTEEQAASLEETASSMEELTSTVRQNSDNARQAN 322 GI+ S ESIS AA++IA GN DLS+RTEEQAASLEETASSMEE+TSTV QN+ NA Q + Sbjct: 268 DGIKHSAESISTAASQIAVGNLDLSRRTEEQAASLEETASSMEEITSTVEQNTQNAGQGH 327 Query: 323 TLAENASTLAAKGGEVVSRVIDTMNEISDSSSKVSDIITVIEGIG-QTNILALNAAVEAA 381 LA +AS A KGGEVV RV+ TM +IS S+ K+++II +EGI QTNILALNAAVEAA Sbjct: 328 QLARSASLHAQKGGEVVERVVGTMKDISQSAYKITEIIATVEGIAFQTNILALNAAVEAA 387 Query: 382 RAGEQGRGFAVVASEVRSLAQRSAAAAKDVKDLITLSGERVERGTHLVGEAGQTINEVVQ 441 RAGEQGRGFAVVA+EVRSLAQRSA++AK+++ LI S + VE G LV EAG T++EVV+ Sbjct: 388 RAGEQGRGFAVVATEVRSLAQRSASSAKEIRGLIESSVQHVEAGQKLVDEAGLTMDEVVR 447 Query: 442 AVRNVTDIMNEITAASSEQTTGIEQVNQALSQMDQVTGAGGA 483 +++ V D+M+EITAAS+EQ++GI Q+N A+SQMD+VT A Sbjct: 448 SIQQVNDLMSEITAASNEQSSGISQINIAISQMDEVTQQNAA 489 >gi|300313067|ref|YP_003777159.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 532 Score = 315 bits (806), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 171/295 (57%), Positives = 229/295 (77%), Gaps = 5/295 (1%) Query: 185 LIVMIAAGALTVLLAIGAGLLITRSIVNALGGEPGAAADVAQQIAAGDLTVAVPLKPNDS 244 ++V+I G VLL++ AG+ ++R+I ++GGEPG AA++A++IAAGDLT + D Sbjct: 192 VVVLIGLG---VLLSLIAGM-VSRNIFRSIGGEPGEAAEMARKIAAGDLTGVIHTTQGDE 247 Query: 245 HSLMASLGSMREQLTTIVRGIQTSGESISVAANEIATGNTDLSQRTEEQAASLEETASSM 304 HSL+A++ R++L V GI+ + ESI + +EIATGN DLS RTE+QA SLEETAS+M Sbjct: 248 HSLVAAVAYTRDRLVDTVHGIKQATESIKTSVDEIATGNMDLSNRTEQQAGSLEETASTM 307 Query: 305 EELTSTVRQNSDNARQANTLAENASTLAAKGGEVVSRVIDTMNEISDSSSKVSDIITVIE 364 EELT+TV+QN+ NA+ AN LA A+ +A +GGEVV +V+ TM I+ SS K+ DII+VI+ Sbjct: 308 EELTATVKQNAANAQHANQLASGAAQVAIQGGEVVGQVVQTMESINASSRKIVDIISVID 367 Query: 365 GIG-QTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKDVKDLITLSGERVE 423 GI QTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAK++K LI S +V+ Sbjct: 368 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLIDDSVGKVD 427 Query: 424 RGTHLVGEAGQTINEVVQAVRNVTDIMNEITAASSEQTTGIEQVNQALSQMDQVT 478 GTHLV AGQT+ EVV +++ V+ +++EI AS EQ++GIEQV +A++QMD+ T Sbjct: 428 AGTHLVQRAGQTMQEVVSSIQGVSTVVSEIATASHEQSSGIEQVGEAITQMDETT 482 >gi|300312818|ref|YP_003776910.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 524 Score = 313 bits (803), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 192/413 (46%), Positives = 269/413 (65%), Gaps = 15/413 (3%) Query: 75 LDP-----YKG---GRKDFKVAFDDAKSLTADNPVQQKRLAEMQELSNKIEEIDQNLIKL 126 LDP YK RK F A + LT D+ +++ E+ LS + ++ + +++L Sbjct: 69 LDPKNQAAYKNLDDSRKGFSDALAASAELTRDDIAYFQKIEEIAGLSQQQLQLQKKIVEL 128 Query: 127 RKEANASGSPQALHTYFGATHDKIFMDRFRVVQKEFVDAEESLLKERGELVRSLSKSTLI 186 AS +A+ T + R R + + + + + E + + SK L+ Sbjct: 129 A----ASDPDKAIKAL--TTEETPVWRRIREQVLALIKTKNADVGKSKEEMDAFSKRMLM 182 Query: 187 VMIAAGALTVLLAIGAGLLITRSIVNALGGEPGAAADVAQQIAAGDLTVAVPLKPNDSHS 246 + IA GA+ L + G + R+++ LGGEP A V+Q+I+ GD + V + ND S Sbjct: 183 LSIALGAVAALTGLVIGYWLIRNVMILLGGEPAYAVAVSQRISGGDFSYDVDVTNNDRSS 242 Query: 247 LMASLGSMREQLTTIVRGIQTSGESISVAANEIATGNTDLSQRTEEQAASLEETASSMEE 306 L+ S+ +M+E+L ++ GI++S IS+A NEIA GN DLS RTEEQA+SLEETAS+MEE Sbjct: 243 LLFSMRAMQERLIDMISGIRSSANRISIATNEIAKGNMDLSSRTEEQASSLEETASAMEE 302 Query: 307 LTSTVRQNSDNARQANTLAENASTLAAKGGEVVSRVIDTMNEISDSSSKVSDIITVIEGI 366 LTS VRQN+ NA QAN LA +A+ +A +GG++V V++TMN+I S+ KV DII+VI+GI Sbjct: 303 LTSVVRQNAGNADQANVLALSATQVAVEGGKLVKDVVETMNQIETSAKKVVDIISVIDGI 362 Query: 367 G-QTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKDVKDLITLSGERVERG 425 QTNILALNAAVEAARAGE GRGFAVVASEVR+LAQRSA AAK++K LI S + VE+G Sbjct: 363 AFQTNILALNAAVEAARAGEGGRGFAVVASEVRNLAQRSAVAAKEIKQLIDNSVDTVEKG 422 Query: 426 THLVGEAGQTINEVVQAVRNVTDIMNEITAASSEQTTGIEQVNQALSQMDQVT 478 LV +AG+T++ VV + V+ I+ EI+A+S EQT GIEQVNQA+ Q+D VT Sbjct: 423 NKLVQQAGETMDNVVSGIERVSSIVGEISASSHEQTKGIEQVNQAIIQIDDVT 475 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.129 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,388,573 Number of extensions: 48177 Number of successful extensions: 710 Number of sequences better than 1.0e-08: 71 Number of HSP's gapped: 429 Number of HSP's successfully gapped: 72 Length of query: 601 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 510 Effective length of database: 1,188,985 Effective search space: 606382350 Effective search space used: 606382350 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)