BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0338.p (313 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313912|ref|YP_003778004.1| AraC family transcription regul... 638 0.0 gi|300313081|ref|YP_003777173.1| transcription regulator protein... 258 4e-70 gi|300311850|ref|YP_003775942.1| AraC family transcription regul... 214 6e-57 gi|300312798|ref|YP_003776890.1| AraC family transcription regul... 160 1e-40 gi|300311694|ref|YP_003775786.1| AraC family transcription regul... 151 8e-38 >gi|300313912|ref|YP_003778004.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/313 (100%), Positives = 313/313 (100%) Query: 1 MHHVGYLLTEGFQVMGLATQAVFEYANKVAGHEFYRLHNYSVGGGELASSLGMRVTTAKA 60 MHHVGYLLTEGFQVMGLATQAVFEYANKVAGHEFYRLHNYSVGGGELASSLGMRVTTAKA Sbjct: 1 MHHVGYLLTEGFQVMGLATQAVFEYANKVAGHEFYRLHNYSVGGGELASSLGMRVTTAKA 60 Query: 61 AATASIDTWVVCGVGNPLESPASAEECAFLQRAAKKARRIAGICTGGFVLAEAGLLARRR 120 AATASIDTWVVCGVGNPLESPASAEECAFLQRAAKKARRIAGICTGGFVLAEAGLLARRR Sbjct: 61 AATASIDTWVVCGVGNPLESPASAEECAFLQRAAKKARRIAGICTGGFVLAEAGLLARRR 120 Query: 121 ATTHWAFARAMQERFPDIQVEDDRIYIVDGPLWTSAGMTAGLDLALAMVGKDLGEEAARS 180 ATTHWAFARAMQERFPDIQVEDDRIYIVDGPLWTSAGMTAGLDLALAMVGKDLGEEAARS Sbjct: 121 ATTHWAFARAMQERFPDIQVEDDRIYIVDGPLWTSAGMTAGLDLALAMVGKDLGEEAARS 180 Query: 181 VARKLVMHQHRAGGQSQHSEMLELAPKTDRIQDALNYARRNLKRALTVEELAEQANLSAR 240 VARKLVMHQHRAGGQSQHSEMLELAPKTDRIQDALNYARRNLKRALTVEELAEQANLSAR Sbjct: 181 VARKLVMHQHRAGGQSQHSEMLELAPKTDRIQDALNYARRNLKRALTVEELAEQANLSAR 240 Query: 241 QFTRVFTSETGQSPAKAIEGLRLEAARLMIEQSRHPLEVVARETGFRDRRHMREVFLRGF 300 QFTRVFTSETGQSPAKAIEGLRLEAARLMIEQSRHPLEVVARETGFRDRRHMREVFLRGF Sbjct: 241 QFTRVFTSETGQSPAKAIEGLRLEAARLMIEQSRHPLEVVARETGFRDRRHMREVFLRGF 300 Query: 301 GVAPQSMRREGRA 313 GVAPQSMRREGRA Sbjct: 301 GVAPQSMRREGRA 313 >gi|300313081|ref|YP_003777173.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 330 Score = 258 bits (660), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 154/293 (52%), Positives = 196/293 (66%), Gaps = 1/293 (0%) Query: 21 AVFEYANKVAGHEFYRLHNYSVGGGELASSLGMRVTTAKAAATASIDTWVVCGVGNPLES 80 + F+ AN++AG YRL YS GG + SS G + T + T S DT +V G G P E Sbjct: 24 SAFDAANRLAGKTLYRLTLYSEPGGMIRSSAGALIHTERIGRT-SFDTLIVAGGGAPREG 82 Query: 81 PASAEECAFLQRAAKKARRIAGICTGGFVLAEAGLLARRRATTHWAFARAMQERFPDIQV 140 S + RAA ++RRIAGICTG FVLA GLL +RATTHW A +Q+ P ++V Sbjct: 83 LVSPALRRHVLRAAARSRRIAGICTGAFVLAATGLLDGKRATTHWRMAAKLQQMHPAVKV 142 Query: 141 EDDRIYIVDGPLWTSAGMTAGLDLALAMVGKDLGEEAARSVARKLVMHQHRAGGQSQHSE 200 + DRIY DG +WTSAG++AG+DLALA++ D G E ARSVAR+LV++ R GGQSQ S Sbjct: 143 DSDRIYSRDGAVWTSAGISAGIDLALALIEDDHGVELARSVARELVVYHRRPGGQSQFSA 202 Query: 201 MLELAPKTDRIQDALNYARRNLKRALTVEELAEQANLSARQFTRVFTSETGQSPAKAIEG 260 + E+ ++RI+ AL +AR +L +ALTV+ LAE A LS RQF R F +ETGQ+PA+AIE Sbjct: 203 LQEMDGGSERIRRALGFAREHLHQALTVDLLAEVACLSRRQFDRAFAAETGQTPARAIEQ 262 Query: 261 LRLEAARLMIEQSRHPLEVVARETGFRDRRHMREVFLRGFGVAPQSMRREGRA 313 +R EAARL IEQS+ LE +AR TGF D MR LR FG PQ+MRR RA Sbjct: 263 MRAEAARLRIEQSQDTLESIARATGFGDADRMRRACLRLFGQPPQAMRRLARA 315 >gi|300311850|ref|YP_003775942.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 343 Score = 214 bits (546), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 126/314 (40%), Positives = 186/314 (59%), Gaps = 9/314 (2%) Query: 4 VGYLLTEGFQVMGLA-TQAVFEYANKVAGHEFYRLHNYSVGGGELASSLGMRVTTAKAA- 61 V +L G ++ L+ V N++ G E YRLH S GG + +S G+ V T Sbjct: 10 VVFLAYAGMNLLDLSGPMQVLATTNRLQGREVYRLHVVSAQGGTILTSAGLPVGTQSLQE 69 Query: 62 ------ATASIDTWVVCGVGNPLESPASAEECAFLQRAAKKARRIAGICTGGFVLAEAGL 115 AT + T + G + + P A A++++ A+ A RI +CTG F LAEAG+ Sbjct: 70 MDRLLQATPDLHTLISPGGSSGDQFPLDAALVAWIRQHAQAAVRICSVCTGAFHLAEAGV 129 Query: 116 LARRRATTHWAFARAMQERFPDIQVEDDRIYIVDGPLWTSAGMTAGLDLALAMVGKDLGE 175 L R TTHW +A+ +Q R+P +QV+ D IYI G +WTSAG+TAG+DLALA+V +DLG Sbjct: 130 LDGLRVTTHWDWAQELQRRYPALQVDADPIYIRQGRIWTSAGVTAGIDLALALVEQDLGH 189 Query: 176 EAARSVARKLVMHQHRAGGQSQHSEMLEL-APKTDRIQDALNYARRNLKRALTVEELAEQ 234 +A + AR+LVM R GGQSQ S L + R + + +L L VE LA + Sbjct: 190 ASAIATARQLVMFIKRPGGQSQFSTPLATQSTGAGRFAELHAWIAAHLADDLHVENLAHR 249 Query: 235 ANLSARQFTRVFTSETGQSPAKAIEGLRLEAARLMIEQSRHPLEVVARETGFRDRRHMRE 294 A +S R F R++ +ETG++PA+ +E +RLEAAR +E++R PL+ +A + G+ + +++R Sbjct: 250 AGMSPRTFARLYVAETGRTPARTVELMRLEAARRALEETRLPLKRIASQAGYGEEQNLRR 309 Query: 295 VFLRGFGVAPQSMR 308 VFLR GV+P R Sbjct: 310 VFLRQLGVSPGQYR 323 >gi|300312798|ref|YP_003776890.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 160 bits (405), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 112/306 (36%), Positives = 164/306 (53%), Gaps = 12/306 (3%) Query: 10 EGFQVMGLATQAVFEYANKVAGHEFYRLHNYSVGGGELA--SSLGMRVTTAKAAATASID 67 E +MG VF A ++A Y L SV G L S L + ++ +D Sbjct: 29 EPLDLMG--PIGVFSRAEELAPGS-YALRVASVDGALLRTRSPLSLAGIVPLSSIEGRLD 85 Query: 68 TWVVCGVGNPLESPASAEECA---FLQRAAKKARRIAGICTGGFVLAEAGLLARRRATTH 124 T +V G G+ +A E A +L R ++ARRI ICTG FVL AGLL R TTH Sbjct: 86 TVLVAG-GHEQAIHQAATEVALVEWLNRRGRQARRIGSICTGAFVLGAAGLLDGRYVTTH 144 Query: 125 WAFARAMQERFPDIQVEDDRIYIVDGPLWTSAGMTAGLDLALAMVGKDLGEEAARSVARK 184 WA +Q+ FP +V+ D IY +DGP+ TSAG+T G+DLALA+V DLG+E A ++AR Sbjct: 145 WAAVDLLQQYFPKAKVDPDAIYRIDGPICTSAGVTTGIDLALALVRDDLGQEIASAIARD 204 Query: 185 LVMHQHRAGGQSQHSEMLELAPKT--DRIQDALNYARRNLKRALTVEELAEQANLSARQF 242 LV+ HR G Q Q S L +A ++ D L + + + ++V LAE+A +S R F Sbjct: 205 LVLFLHRPGRQQQISATL-VAQQSAGDLFSALLVWMLDHPQEDMSVNALAERAAMSPRNF 263 Query: 243 TRVFTSETGQSPAKAIEGLRLEAARLMIEQSRHPLEVVARETGFRDRRHMREVFLRGFGV 302 R F E G+ P + + LR++ A +E++ +E +A +G ++ + VF + G+ Sbjct: 264 ARRFLREVGKPPGQYVLELRIDHACRHLEKTGWSIERIAERSGLKNADTLHRVFRQHLGM 323 Query: 303 APQSMR 308 P R Sbjct: 324 TPAQYR 329 >gi|300311694|ref|YP_003775786.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 375 Score = 151 bits (381), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 103/325 (31%), Positives = 166/325 (51%), Gaps = 16/325 (4%) Query: 3 HVGYLLTEGFQVMGLATQA-VFEYANKVAGHEF-----YRLHNYSVGGGELASSLGMRVT 56 H+G +++EG + LA A VF +K+ F Y SV GG + +S +++ Sbjct: 35 HIGVIVSEGVILADLAEIAEVFFVTDKMLSSMFSQGNGYHFSLLSVRGGMITTSSSVQIG 94 Query: 57 TA--KAAATASIDTWVVC-GVGNPLESPASAEECAFLQRAAKKARRIAGICTGGFVLAEA 113 T + + D+ ++ G GN + +L AA A RIA +CTG VLAEA Sbjct: 95 TLSLQHHDIRAFDSIIIADGRGN-FADCNDPQLLNWLATAALHAPRIAALCTGVLVLAEA 153 Query: 114 GLLARRRATTHWAFARAMQERFPDIQVEDDRIYIVDGPLWTSAGMTAGLDLALAMVGKDL 173 GLL R++ HWA +Q FPDI VE + D ++TSA G ++ALA++ DL Sbjct: 154 GLLDRKKVAAHWALRDRLQREFPDIHVEPGDTLVQDQNVFTSADSGTGAEVALALIEDDL 213 Query: 174 GEEAARSVARKLVMHQHRAGGQSQHSEMLELAP-----KTDRIQDALNYARRNLKRALTV 228 G A + + L + QH S S E+ P +++RIQ AL + ++ ++ + Sbjct: 214 GSSFAHRIEQSLTVRQHHQFKHSL-SRGSEIRPGEKRHRSERIQKALIWLDEHMSSSINM 272 Query: 229 EELAEQANLSARQFTRVFTSETGQSPAKAIEGLRLEAARLMIEQSRHPLEVVARETGFRD 288 E A+ ++S R F R F ETG++P + +R+EAA L ++++ P+E +AR G Sbjct: 273 SEAADHVSMSERNFQREFKRETGETPHCFLTKIRIEAACLYLKETDLPIEKIARRCGLVS 332 Query: 289 RRHMREVFLRGFGVAPQSMRREGRA 313 H+ +F + GV+P R++ A Sbjct: 333 GEHLARLFRKHHGVSPGEYRKKENA 357 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.132 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 894,682 Number of extensions: 33406 Number of successful extensions: 171 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 169 Number of HSP's successfully gapped: 6 Length of query: 313 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 228 Effective length of database: 1,217,395 Effective search space: 277566060 Effective search space used: 277566060 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)