BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0326.p (1063 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313900|ref|YP_003777992.1| cation/multidrug efflux pump pr... 2119 0.0 gi|300313716|ref|YP_003777808.1| cobalt-zinc-cadmium resistance ... 294 3e-80 gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump pr... 291 2e-79 gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump pr... 281 2e-76 gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump tr... 269 9e-73 >gi|300313900|ref|YP_003777992.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1063 Score = 2119 bits (5491), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1061/1063 (99%), Positives = 1062/1063 (99%) Query: 1 MNMVALALRRPYTFIVMALLIVLATPLTLKNMATDIFPEINIPVVSIIWNYNGLSAQEMG 60 MNMVALALRRPYTFIVMALLIVLATPLTLKNMATDIFPEINIPVVSIIWNYNGLSAQEMG Sbjct: 1 MNMVALALRRPYTFIVMALLIVLATPLTLKNMATDIFPEINIPVVSIIWNYNGLSAQEMG 60 Query: 61 QRIAAQNERGLTTVVSDIEHIESQSLAGVSVIKVFFQPKANIQTAIAQVVASVQTQVRQL 120 QRIAAQNERGLTTVVSDIEHIESQSLAGVSVIKVFFQPKANIQTAIAQVVASVQTQVRQL Sbjct: 61 QRIAAQNERGLTTVVSDIEHIESQSLAGVSVIKVFFQPKANIQTAIAQVVASVQTQVRQL 120 Query: 121 PPGITPPLVIKYSASSIPVMQLALSSPTLPEQTVFDAAVQTLRPQLVTIPGVAVPYPYGG 180 PPGITPPLVIKYSASSIPVMQLALSSPTLPEQTVFDAAVQTLRPQLVTIPGVAVPYPYGG Sbjct: 121 PPGITPPLVIKYSASSIPVMQLALSSPTLPEQTVFDAAVQTLRPQLVTIPGVAVPYPYGG 180 Query: 181 KSRLISVDLDTQALQARGLAPIDVVNAINTQNLILPSGTAKFGATEYSVKINGSPEAVAG 240 KSRLISVDLDTQALQARGLAPIDVVNAINTQNLILPSGTAKFGATEYSVKINGSPEAVAG Sbjct: 181 KSRLISVDLDTQALQARGLAPIDVVNAINTQNLILPSGTAKFGATEYSVKINGSPEAVAG 240 Query: 241 LNELPVRTTNGATIYLKDVANVRDGFSPQTNVVRQDGARGVLLSILKNGGASTLDIVDNL 300 LNELPVRTTNGATIYLKDVANVRDGFSPQTNVVRQDGARGVLLSILKNGGASTLDIVDNL Sbjct: 241 LNELPVRTTNGATIYLKDVANVRDGFSPQTNVVRQDGARGVLLSILKNGGASTLDIVDNL 300 Query: 301 RKLLPTAAQTLPEDIKITPLFDQSVFVKAAVTGVISEALIAAGLTAAMVLLFLGNWRSTL 360 RKLLPTAAQTLPEDIKITPLFDQSVFVKAAVTGVISEALIAAGLTAAMVLLFLGNWRSTL Sbjct: 301 RKLLPTAAQTLPEDIKITPLFDQSVFVKAAVTGVISEALIAAGLTAAMVLLFLGNWRSTL 360 Query: 361 IIGLTIPLSIMAAILILAALGETLNLMTLGGLALSVGILVDQAIVTIENIERHLHLGKPL 420 IIGLTIPLSIMAAILILAALGETLNLMTLGGLALSVGILVDQAIVTIENIERHLHLGKPL Sbjct: 361 IIGLTIPLSIMAAILILAALGETLNLMTLGGLALSVGILVDQAIVTIENIERHLHLGKPL 420 Query: 421 HDAIIVGAGEIGVPAFVATLCICIVFVPMFFLSGVARFLFVPLAEAVVFAMAASYLLSRT 480 HDAIIVGAGEIGVPAFVATLCICIVFVPMFFLSGVARFLFVPLAEAVVFAMAASYLLSRT Sbjct: 421 HDAIIVGAGEIGVPAFVATLCICIVFVPMFFLSGVARFLFVPLAEAVVFAMAASYLLSRT 480 Query: 481 LVPTLVMLLMGSHGQVDSAKQSLLQRLYRAFDNRFERVRHGYTLVLSSLLAHRRRFALAF 540 LVPTLVMLLMGSHGQVDSAKQSLLQRLYRAFDNRFERVRHGYTLVLSSLLAHRRRFALAF Sbjct: 481 LVPTLVMLLMGSHGQVDSAKQSLLQRLYRAFDNRFERVRHGYTLVLSSLLAHRRRFALAF 540 Query: 541 LGFCLLSCLLYPFLGRDFFPNVDGGQIRLHMRMPTGTRIEETARAADEVERVIRTLIPAS 600 LGFCLLSCLLYPFLGRDFFPNVDGGQIRLHMRMPTGTRIEETARAADEVERVIRTLIPAS Sbjct: 541 LGFCLLSCLLYPFLGRDFFPNVDGGQIRLHMRMPTGTRIEETARAADEVERVIRTLIPAS 600 Query: 601 ELETILDNLGVPNSGINLSYSNAGTIGTLDGEILMALKEGHRPTEALVSLLRAELPRRFP 660 ELETILDNLGVPNSGINLSYSNAGTIGTLDGEILMALKEGHRPTEALVS+LRAELPRRFP Sbjct: 601 ELETILDNLGVPNSGINLSYSNAGTIGTLDGEILMALKEGHRPTEALVSMLRAELPRRFP 660 Query: 661 GIEFFFQPADIVTQILNFGLPAAIDVQFTGPNMEANARLAAELTKQIRQIPGAVDAHVHQ 720 GIEFFFQPADIVTQILNFGLPAAIDVQFTGPNMEANARLAAELTKQIRQIPGAVDAHVHQ Sbjct: 661 GIEFFFQPADIVTQILNFGLPAAIDVQFTGPNMEANARLAAELTKQIRQIPGAVDAHVHQ 720 Query: 721 RLDGPSLDLRMDRTRLQQFGLSASNVGQNLLIALAGSSQTQPAFWLNPNNGVVYNIAVQS 780 RLDGPSLDLRMDRTRLQQFGLSASNVGQNLLIALAGSSQTQPAFWLNPNNGVVYNIAVQS Sbjct: 721 RLDGPSLDLRMDRTRLQQFGLSASNVGQNLLIALAGSSQTQPAFWLNPNNGVVYNIAVQS 780 Query: 781 PQYQVDSLDALLNIPVSPGANASTTPPQLLGNLVDVHAGRQMAVASRYNIAPAIDVYVSV 840 PQYQVDSLDALLNIPVSPGANASTTPPQLLGNLVDVHAGRQMAVASRYNIAPAIDVYVSV Sbjct: 781 PQYQVDSLDALLNIPVSPGANASTTPPQLLGNLVDVHAGRQMAVASRYNIAPAIDVYVSV 840 Query: 841 QGTDLASVAGKVSALVEQIKPKLARGSQVVIRGQVETMQSSFTGLGVGLAMAIVLVYLLV 900 QGTDLASVAGKVSALVEQIKPKLARGSQVVIRGQVETMQSSFTGLGVGLAMAIVLVYLLV Sbjct: 841 QGTDLASVAGKVSALVEQIKPKLARGSQVVIRGQVETMQSSFTGLGVGLAMAIVLVYLLV 900 Query: 901 VVNFQSWIDAAIIIAALPAALAGIAWMLFITGTTLSVPALTGAIMTMGVATANSILIVAF 960 VVNFQSWIDAAIIIAALPAALAGIAWMLFITGTTLSVPALTGAIMTMGVATANSILIVAF Sbjct: 901 VVNFQSWIDAAIIIAALPAALAGIAWMLFITGTTLSVPALTGAIMTMGVATANSILIVAF 960 Query: 961 ARQRREEGATPLAAALEAGSTRIRPVLMTALAMIIGMIPMALGLGEGAEQNAPLGRAVIG 1020 ARQRREEGATPLAAALEAGSTRIRPVLMTALAMIIGMIPMALGLGEGAEQNAPLGRAVIG Sbjct: 961 ARQRREEGATPLAAALEAGSTRIRPVLMTALAMIIGMIPMALGLGEGAEQNAPLGRAVIG 1020 Query: 1021 GLMLATVSTLFFVPVVFAGVHQRLARRADQRRDLAGGPAHQES 1063 GLMLATVSTLFFVPVVFAGVHQRLARRADQRR LAGGPAHQES Sbjct: 1021 GLMLATVSTLFFVPVVFAGVHQRLARRADQRRALAGGPAHQES 1063 >gi|300313716|ref|YP_003777808.1| cobalt-zinc-cadmium resistance cation efflux system transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1073 Score = 294 bits (752), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 278/1063 (26%), Positives = 501/1063 (47%), Gaps = 70/1063 (6%) Query: 28 TLKNMATDIFPEINIPVVSIIWNYNGLSAQEMGQRIAAQNERGLTTVVSDIEHIESQSLA 87 + + + D P+I V I + G S E QRI+ E L + + ++E + S S Sbjct: 30 SYQKLPIDAVPDITNVQVQINTSAPGYSPLEAEQRISYPIET-LMSGLPNLEQVRSLSRY 88 Query: 88 GVSVIKVFFQPKANIQTAIAQVVASVQTQVRQLPPGITPPL-VIKYSASSIPVMQL-ALS 145 G+S + V F+ +I A V +Q QLPPGI P + I I + + + Sbjct: 89 GLSQVTVIFKDGTDIYFARQLVNERIQLARSQLPPGIDPGMGPISTGLGEIYLWTVESRD 148 Query: 146 SPTLPEQTVFDAA----VQ--TLRPQLVTIPGVAVPYPYGGKSRLISVDLDTQALQARGL 199 P+ T + A +Q ++PQL +PGV GG ++ V + L + G+ Sbjct: 149 DARKPDGTPYTATDLREIQDWVIKPQLRLVPGVTEINTIGGFAKEYLVAPSAEKLASYGM 208 Query: 200 APIDVVNAINTQNLILPSGTAKFGATEYSVKINGSPEAVAGLNELPVRTTNGATIYLKDV 259 ++ A+ N + +G + +Y ++ G ++ + + + G I ++DV Sbjct: 209 TMDTIIKALEKNNSNVGAGYIERRGEQYLIRAPGQVASIDDIGNIVLANVKGVPIRIRDV 268 Query: 260 ANVRDGFSPQTNVVRQDGARGVLLSILKNGGASTLDIVDNLRKLLPTAAQTLPEDIKITP 319 A V G +T ++G VL ++ G ++ + + + + ++LP+ ++ Sbjct: 269 AEVEIGRELRTGAATENGREVVLGTVFMLIGENSRKVSQAVARKMEEINRSLPKGVEAVT 328 Query: 320 LFDQSVFVKAAVTGVISEALIAAGLTAAMVLLFLGNWRSTLIIGLTIPLSIMAAILILAA 379 ++D++V V A+ V + A L A++ +FLGN R+ +I + IPL+++ + + Sbjct: 329 VYDRTVLVDKAIATVKKNLVEGALLVVAVLFVFLGNIRAAIITAMVIPLAMLFTFTGMVS 388 Query: 380 LGETLNLMTLGGLALSVGILVDQAIVTIENIERHL-----HLGKPL------HDAIIVGA 428 + NL++LG AL GI++D A+V +EN R L H G+ L H+ + A Sbjct: 389 NKVSANLLSLG--ALDFGIIIDGAVVIVENCVRRLAHAQAHHGRTLTRSERFHE-VFAAA 445 Query: 429 GEIGVPAFVATLCICIVFVPMFFLSGVARFLFVPLAEAVVFAMAASYLLSRTLVPTLVML 488 E P L I IV++PMF L+GV +F P+A VV A+ + +LS T +P + L Sbjct: 446 KEARRPLIFGQLIIMIVYLPMFALTGVEGKMFTPMAFTVVAALIGAMILSVTFIPAAIAL 505 Query: 489 LMGSHGQVDSAKQSLLQRLYRAFDNRFERVRHGYTLVLSSLLAHRRRFALAFLGFCLLSC 548 +G +V + L+ R ++ + + +VL+ F G +L C Sbjct: 506 FIGE--KVAEKENILMLWAKRLYEPMLKTIMENKPVVLT------------FAGALILVC 551 Query: 549 -LLYPFLGRDFFPNVDGGQIRLH-MRMPTGTRIEETARAADEVERVIRTLIPASELETIL 606 ++ LG +F P+++ G + + +R+P GT + ++ ++E+ ++ P E+E + Sbjct: 552 GVVASRLGSEFVPSLNEGDMAIQALRIP-GTSLSQSLEMQKQIEKTLKQKFP--EVERVF 608 Query: 607 DNLGVPNSGINLSYSNAGTIGTLDGEILMALKEG----HRPTEALVSLLRAELPRRFPGI 662 G + N DG I++ +E + E L+ ++ E+ + PG Sbjct: 609 ARTGTAEVASDPMPPNIS-----DGYIMLKPQEQWPEPKKSREELLEAIQDEVAK-IPGN 662 Query: 663 EF-FFQPADIVTQILNFGLPAAIDVQFTGPNMEANARLAAELTKQIRQIPGAVDAHVHQR 721 + F QP + L G+ + + V+ G +M+ A++++ + +IPGA + + Q Sbjct: 663 SYEFSQPIQLRFNELISGVRSDVAVKVFGDDMKVLNDTASKISAVLEKIPGATEVKIEQT 722 Query: 722 LDGPSLDLRMDRTRLQQFGLSASNVGQNLLIALAGSSQTQPAFWLNPNNGVVYNIAVQSP 781 P L + +DR + ++GL+ S++ + A+ G + F + G+V V+ P Sbjct: 723 TGLPMLTVEIDREKTARYGLNVSDIQDTVATAIGGK-EAGTMFQGDRRFGIV----VRLP 777 Query: 782 QYQVDSLDALLNIPVS--PGANASTTPPQLLGNLVDVHAGRQMAVASRYNIAPAIDVYVS 839 L+A+ +P++ P A+ LG + + SR + I V + Sbjct: 778 DQARTDLEAIRRLPIALPPQEGATRVSYVPLGEVASLTIAPGPNQISREDGKRRIVVSAN 837 Query: 840 VQGTDLASVAGKVSALVEQIKP--KLARGSQVVIRGQVETMQSSFTGLGVGLAMAIVLVY 897 V+G DL G V+ Q++ K+ G GQ E +QS+ L + + +A+++V+ Sbjct: 838 VRGRDLG---GFVAEAERQLQSAVKVPAGYWTTWGGQFENLQSATQRLQIVIPVALLMVF 894 Query: 898 LLVVVNFQSWIDAAIIIAALPAALAGIAWMLFITGTTLSVPALTGAIMTMGVATANSILI 957 +L+ F + D ++ +P AL G L + G +S+ A G I GVA N +++ Sbjct: 895 VLLFAMFSNVKDGLLVFTGIPFALTGGILALAMRGIPMSISAAVGFIALSGVAVLNGLVM 954 Query: 958 VAFARQRREEGATPLAAALEAGSTRIRPVLMTALAMIIGMIPMALGLGEGAEQNAPLGRA 1017 ++F R REEG T AA E TR+RPVLMTAL +G +PMAL G GAE PL Sbjct: 955 ISFIRSLREEGRTLDAAIHEGAMTRLRPVLMTALVASLGFVPMALATGTGAEVQRPLATV 1014 Query: 1018 VIGGLMLATVSTLFFVPVVFAGVHQRLARRADQRRDLAGGPAH 1060 VIGG++ +T TL +P+++ H + D+ + AG P+ Sbjct: 1015 VIGGILSSTALTLLVLPLLYKLAHDK-----DEEDNPAGPPSR 1052 >gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 291 bits (745), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 280/1092 (25%), Positives = 496/1092 (45%), Gaps = 93/1092 (8%) Query: 1 MNMVALALRRPYTFIVMALLIVLATPLTLKNMATDIFPEINIPVVSIIWNYNGLSAQEMG 60 M++ A ++RP ++A+ I+L + P+++ P + + G S + M Sbjct: 1 MSVSAAFIKRPIGTTLLAIAILLVGVAVWPLLPVAPLPQVDFPTIQVTAQLPGGSPETMA 60 Query: 61 QRIAAQNERGLTTVVSDIEHIESQSLAGVSVIKVFFQPKANIQTAIAQVVASVQTQVRQL 120 +A ER + +++ + + SQS G + I + F NI A V A++ QL Sbjct: 61 SNVAQPLERQFS-LIAGLSQMTSQSTLGSTQITLQFDLNRNIDAAALDVQAAINASTGQL 119 Query: 121 PPGI-TPPLVIKYSASSIPVMQLALSSPTLPEQTVFDAAVQTLRPQLVTIPGVAVPYPYG 179 P + PP K + + P+M +++ S LP V D A L Q+ I GV + G Sbjct: 120 PANLPNPPTFRKINPADSPIMIMSVQSEALPLTVVNDYADNILAQQISQISGVGLVNVNG 179 Query: 180 GKSRLISVDLDTQALQARGLAPIDVVNAINTQNLILPSGTAKFGATEYSVKINGSPEAVA 239 + + + +D L GL+ D+ I T + P GT ++V N Sbjct: 180 QQKPAVRIQVDPAKLATLGLSLEDIRGVIATTTVNQPKGTVDGARQAFTVYTNDQLLKAE 239 Query: 240 GLNELPVRTTNGATIYLKDVANVRDGFSPQTNVVRQ--------------DGARGVLLSI 285 N++ + NGA I +KD+ DG P+ N + R ++L+I Sbjct: 240 QWNDMVLAWRNGAPIRVKDIGIAVDG--PENNKIAAWAFAGAANTADHSITNGRSIVLAI 297 Query: 286 LKNGGASTLDIVDNLRKLLPTAAQTLPEDIKITPLFDQSVFVKAAVTGVISEALIAAGLT 345 K GA+ ++ V ++ +P +P I + L D++ ++A+V V ++ L Sbjct: 298 TKQPGANVIETVGRIKAAMPRLRAAIPAAIHVNTLIDRTQTIRASVEDVEFTLVLTIALV 357 Query: 346 AAMVLLFLGNWRSTLIIGLTIPLSIMAAILILAALGETLNLMTLGGLALSVGILVDQAIV 405 ++ +FL N +TLI +T+PL+IM ++ +G +L+ ++L L ++VG +VD AIV Sbjct: 358 VMVIFVFLRNVAATLIPSVTVPLAIMGTAGVMYVVGYSLDNLSLMALTIAVGFVVDDAIV 417 Query: 406 TIENIERHLHLGKPLHDAIIVGAGEIGVPAFVATLCICIVFVPMFFLSGVARFLFVPLAE 465 +ENI R++ G +A + GAGEIG ++ + VF+P+ + G+ LF A Sbjct: 418 MLENIYRYVEEGMTPLEAALKGAGEIGFTIISISVSLVAVFIPLLLMGGIVGRLFREFAV 477 Query: 466 AVVFAMAASYLLSRTLVPTLV-MLLMGSHGQVDSAKQSLLQRLYRAFDNRFERVRHGYTL 524 V +A S ++S TL P L L HGQ +LY+ F+ F+ + GY Sbjct: 478 TVTLTIAVSVIISLTLTPMLCSRFLKNEHGQRHG-------KLYQWFERCFDAMLAGYKR 530 Query: 525 VLSSLLAHRRRFALAFLGFCLLSCLLYPFLGRDFFPNVDGGQIRLHMRMPTGTRIEETAR 584 L ++ H+ ++F+ L+ +L+ F+ + FFP D G I + ++T+ Sbjct: 531 GLDVVMKHQFITLMSFIATLALTAVLFIFIPKGFFPQQDNGVI-----VGFAESAQDTSS 585 Query: 585 AADEVERVIRTLIPASELETILDNLGVPNSGINLSYSNAGTIGTLDGEILMAL--KEGHR 642 AA ER+++ A + D +G S AG+ G+ +AL K+ R Sbjct: 586 AAMH-ERLLKV---AEVVRQDPDVIGFAMS--------AGSTTFNTGQFFIALKPKDQGR 633 Query: 643 PTEA--LVSLLRAELPRRFPGIEFFFQPADIVTQILNFG---LPAAIDVQFTGPNMEANA 697 T A +++ LR ++ R G+ F Q +Q +N G T +++ Sbjct: 634 TTNADEIIARLRPKVA-RIEGVNLFMQ----ASQDINVGGRLSRTQYQYTITDTDLDELN 688 Query: 698 RLAAELTKQIRQIPGAVDAHVHQRLDGPSLDLRMDRTRLQQFGLSASNVGQNLLIALAGS 757 A + ++ RQ+P D Q+ + + +DR R FG+S S + + A+ Sbjct: 689 VWAPRMLERFRQLPQLTDVASDQQNQAAAAVITIDRARASSFGISPSLIDATIYDAIG-- 746 Query: 758 SQTQPAFWLNPNNGVVYNIAVQ-SPQYQVDS--LDALL--------NIPVSPGANASTTP 806 Q Q A + N Y + ++ +P Q D D L +P+S T+ Sbjct: 747 -QRQVAQYFTQINS--YRVILEVTPALQKDPALFDKLYLTSPLTGQQVPLSTFVKIDTSK 803 Query: 807 PQLLGNLVDVHAGRQMAVASRYNIAPAIDVYVSVQGTDLASVAGKVSALVEQIKPKLARG 866 L H + AV +N+A + + G+ ++++ K ++ Sbjct: 804 TSYLS---ISHQSQFPAVTISFNLAKGVSL-------------GEAVDVIQKTKDQMGVP 847 Query: 867 SQVV--IRGQVETMQSSFTGLGVGLAMAIVLVYLLVVVNFQSWIDAAIIIAALPAALAGI 924 +V +G + S + +A A++ VY+++ + ++S+I I++ LP+A G Sbjct: 848 QTLVGNFQGTAKAFGDSLSSQPYLIAAALIAVYIVLGLLYESYIHPLTILSTLPSAGVGA 907 Query: 925 AWMLFITGTTLSVPALTGAIMTMGVATANSILIVAFA-RQRREEGATPLAAALEAGSTRI 983 +L G LSV AL G I+ +G+ N I+++ FA R +G P A +A R Sbjct: 908 LLILMAGGYDLSVIALIGIILLIGIVKKNGIMMIDFALTAERSQGMKPEQAIYQACLLRF 967 Query: 984 RPVLMTALAMIIGMIPMALGLGEGAEQNAPLGRAVIGGLMLATVSTLFFVPVVFAGV--- 1040 RP++MT + ++ +P+ LG G G+E PLG A++GGL+L+ TLF PVV+ + Sbjct: 968 RPIMMTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLILSQALTLFTTPVVYLYLDRA 1027 Query: 1041 HQRLARRADQRR 1052 H R+ + R+ Sbjct: 1028 HYWYMRKKEARQ 1039 >gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1078 Score = 281 bits (719), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 273/1089 (25%), Positives = 488/1089 (44%), Gaps = 61/1089 (5%) Query: 1 MNMVALALRRPYTFIVMALLIVLATPLTLKNMATDIFPEINIPVVSIIWNYNGLSAQEMG 60 MN+ ++RP ++ + I LA + + + P+++ P +SI + G S + M Sbjct: 1 MNISLPFIQRPIATTLLTIGIALAGIVAFRLLPVSPLPQVDYPTISISASMPGASPETMA 60 Query: 61 QRIAAQNERGLTTVVSDIEHIESQSLAGVSVIKVFFQPKANIQTAIAQVVASVQTQVRQL 120 +A ER + ++ + + S S + I + F +I A V A++ L Sbjct: 61 ATVATPLERAMG-AIAGVTEMTSTSSQNSTRITLQFDLSRDIDGAARDVQAALNAARNLL 119 Query: 121 PPGI-TPPLVIKYSASSIPVMQLALSSPTLPEQTVFDAAVQTLRPQLVTIPGVAVPYPYG 179 P G+ + P K + + P++ LA++S T+ + ++DAA + +L + GV G Sbjct: 120 PTGMPSNPTYRKVNPADAPILILAMTSDTMTQGQMYDAADSIVAQKLSQVRGVGQVSVGG 179 Query: 180 GKSRLISVDLDTQALQARGLAPIDVVNAINTQNLILPSGTAKFGATEYSVKINGSPEAVA 239 + ++L+ AL G+ DV A+ N P G + + + N + A Sbjct: 180 SSQPAVRIELNPTALNKYGIGTADVRTAVAATNANRPKGLLEDQDRNWQIYANDQAKTAA 239 Query: 240 GLNELPVRTTNGATIYLKDVANVRDGFSPQTNVVRQDGARGVLLSILKNGGASTLDIVDN 299 L V NG + ++DVA VRD + N +G VL+ I + GA+ +D VDN Sbjct: 240 EYAPLIVSYRNGTPVRVQDVAEVRDSVADVRNAGSSNGKPSVLIIINRQPGANIIDTVDN 299 Query: 300 LRKLLPTAAQTLPEDIKITPLFDQSVFVKAAVTGVISEALIAAGLTAAMVLLFLGNWRST 359 +R+LLP ++P I + + D++ ++A++ +++ L +V LFL N R+T Sbjct: 300 VRELLPQLQASIPSAIDMKVVLDRTPTIRASLKETEFTLILSVALVIMVVFLFLRNARAT 359 Query: 360 LIIGLTIPLSIMAAILILAALGETLNLMTLGGLALSVGILVDQAIVTIENIERHLHLGKP 419 LI + +P+S++ ++ G +L+ ++L L ++ G +VD AIV +ENI RH+ G Sbjct: 360 LIPAVAVPVSLIGTFGVMYLAGFSLDNLSLMALTIATGFVVDDAIVVLENISRHIESGMK 419 Query: 420 LHDAIIVGAGEIGVPAFVATLCICIVFVPMFFLSGVARFLFVPLAEAVVFAMAASYLLSR 479 + A ++GA E+G ++ + VF+P+ + G+ LF A + A+ S ++S Sbjct: 420 PYKAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITLSVAILVSLVVSL 479 Query: 480 TLVPTLVMLLMGSHGQVDSAKQS----LLQRLYRAFDNRFERVRHGYTLVLSSLLAHRRR 535 T P + L+ D A++ LQ++ FE + Y L+ L Sbjct: 480 TTTPMMCAQLLRHDPAADEARRQRRHPWLQKIADQSAAIFEDMLLAYQRTLAWALRAAPL 539 Query: 536 FALAFLGFCLLSCLLYPFLGRDFFPNVDGGQIRLHMRMPTGTRIEETARAADEVERVIRT 595 L L L+ LY + + FFP D G++ +R + +E ++R Sbjct: 540 MMLILLATIALNVYLYKAIPKGFFPQQDTGRLVGGIRGDQAISFQAMRTKLNEFIDIVRA 599 Query: 596 LIPASELETILDNLGVPNSGINLSYSNAGTIGTLDGEILMALKEGHRPTEALVSLLRAEL 655 S++ N G + L L E + +V+ LR + Sbjct: 600 DPAVSDVVAFTGG----------QRRNGGFMYV----TLKPLSERKDSADKVVARLRIKT 645 Query: 656 PRRFPGIEFFFQPADIVTQILNFGLPAAIDVQFTGPNMEANARLAAELTKQIR----QIP 711 + G F P Q + G + D Q+ + L +IR + Sbjct: 646 A-KVAGARVFLVP----VQDIRIGARQS-DSQYEYSLKSDDVGLLRIWEPKIRLALSNLK 699 Query: 712 GAVDAHVHQRLDGPSLDLRMDRTRLQQFGLSASNVGQNLLIALAGSSQTQPAFWLNPNNG 771 D Q+ +G L +DR + G++ + + L L G Q + Sbjct: 700 ELEDISTDQQDNGLQTTLTIDRETAMRAGVTPQLI-DSTLSDLFGQRQISTIYSGMNQYH 758 Query: 772 VVYNIA---VQSPQYQVDSLDALL-NIPVSPGANASTTPPQL-----------LGNLVDV 816 VV A QSP+ D+ +L + +SP ++ +TPP L L + Sbjct: 759 VVMEAAPQYWQSPETLRDTYVSLAGSSNLSPTTSSLSTPPALSASGKLNANTGLAQTIST 818 Query: 817 HAGRQMAVASRYNIAP-AIDVYVSVQGTDLASV----------AGKVSALVEQIKPKLAR 865 RQ+ +A+ P + VS +G +AS + +A +++ +L Sbjct: 819 APSRQIPLAAFSRFEPTTTSLSVSHEGQFVASTLSFNLAEGVSLSQATAAIDRAMAQLGV 878 Query: 866 GSQVV--IRGQVETMQSSFTGLGVGLAMAIVLVYLLVVVNFQSWIDAAIIIAALPAALAG 923 + V+ G QSS + + + A++ VY+++ + ++S I II+ LP+A G Sbjct: 879 PTNVLGTFAGTANAFQSSTSSQPLLILTALLAVYIVLGILYESLIHPITIISTLPSAGVG 938 Query: 924 IAWMLFITGTTLSVPALTGAIMTMGVATANSILIVAFA-RQRREEGATPLAAALEAGSTR 982 L +TGT S+ AL G I+ +G+ N+I++V FA R G +P A EA R Sbjct: 939 ALLALMVTGTDFSLIALIGVILLIGIVKKNAIMMVDFAIDAERNRGMSPRDAIFEACKLR 998 Query: 983 IRPVLMTALAMIIGMIPMALGLGEGAEQNAPLGRAVIGGLMLATVSTLFFVPVVFAGVHQ 1042 RP++MT +A ++G IP+A+G G+GAE PLG +++GGL+++ + TL+ PVV+ + Sbjct: 999 FRPIMMTTMAALLGAIPLAIGHGDGAELRQPLGISIVGGLVVSQLLTLYTTPVVYL-YME 1057 Query: 1043 RLARRADQR 1051 RL+ + +R Sbjct: 1058 RLSSWSKRR 1066 >gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 269 bits (687), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 271/1073 (25%), Positives = 487/1073 (45%), Gaps = 85/1073 (7%) Query: 10 RPYTFIVMALLIVLATPLTLKNMATDIFPEINIPVVSIIWNYNGLSAQEMGQRIAAQNER 69 RP ++ L I+L + + + PE++ P + ++ Y G S M + A ER Sbjct: 10 RPVATSLLMLAILLVGIVAYRLLPLSALPEVDYPTIQVVTLYPGASPDVMTSSVTAPLER 69 Query: 70 GLTTVVSDIEHIESQSLAGVSVIKVFFQPKANIQTAIAQVVASVQTQVRQLPPGI-TPPL 128 + ++ + S S G SVI + F ++ A +V A++ LP + PP+ Sbjct: 70 QFGQM-PGLKQMSSTSSGGASVITLQFNLDLSLDIAEQEVQAAINAGSNLLPSDLPMPPV 128 Query: 129 VIKYSASSIPVMQLALSSPTLPEQTVFDAAVQTLRPQLVTIPGVAVPYPYGGKSRLISVD 188 K + + P++ LA++S T+P V D + ++ + GV + GG+ + + Sbjct: 129 YSKVNPADTPIITLAVTSNTMPLPKVQDLIDTRIAQKISQLSGVGLVSLSGGQRPAVRMQ 188 Query: 189 LDTQALQARGLAPIDVVNAINTQNLILPSGTAKFGATEYSVKINGSPEAVAGLNELPVRT 248 L+ +A+ A GL DV AI N+ G+ ++ N + L + Sbjct: 189 LNPRAVAALGLNLDDVRTAIGNANVNQAKGSFDGPTRASTIDANDQLRSADEYRNLIIAY 248 Query: 249 TNGATIYLKDVANVRDGFSPQTNVVRQDGARGVLLSILKNGGASTLDIVDNLRKLLPTAA 308 NGA I + DVA+V DG + V+++I + GA+ + +VD+++K+LP Sbjct: 249 KNGAPIRVSDVADVVDGAENVRLGAWANTQPAVIVNIQRQPGANVIAVVDSIKKILPQLQ 308 Query: 309 QTLPEDIKITPLFDQSVFVKAAVTGVISEALIAAGLTAAMVLLFLGNWRSTLIIGLTIPL 368 +LP I + L D++ ++A+V V E L++ L ++ +FL N +T+I + +PL Sbjct: 309 ASLPGAIDVHILTDRTTTIRASVDDVKFELLLSVALVVMVIFVFLRNVPATIIPSVAVPL 368 Query: 369 SIMAAILILAALGETLNLMTLGGLALSVGILVDQAIVTIENIERHLHLGKPLHDAIIVGA 428 S++ I+ G ++N +TL L ++ G +VD AIV IENI R++ G A + GA Sbjct: 369 SLVGTFAIMYLAGFSINNLTLMALTIATGFVVDDAIVMIENISRYIEEGMKPMQAALKGA 428 Query: 429 GEIGVPAFVATLCICIVFVPMFFLSGVARFLFVPLAEAVVFAMAASYLLSRTLVPTLVML 488 +IG T + V +P+ F+ V LF A + ++ S ++S TL P + Sbjct: 429 EQIGFTIISLTFSLIAVLIPLLFMGDVVGRLFHEFAVTLAVSILISAVVSLTLTPMMCAR 488 Query: 489 LMGSHGQVDSAKQSLLQRLYRAFDNRFERVRHGYTLVLSSLLAHRRRFALAFLGFCLLSC 548 L+ + Y F+R+ Y ++L +LA ++ L L+ Sbjct: 489 LLRHQPEEQQG------WFYHKSQQFFDRIIARYGVMLQWVLARQKLTLLVAAATLGLTV 542 Query: 549 LLYPFLGRDFFPNVDGGQIRLHMRMPTGTRIEETARAADEVERVIRTLIPASELETILDN 608 LLY F+ + FFP D G I+ + T+ + ++ +++ + ++ +E++ Sbjct: 543 LLYVFVPKGFFPLQDTGVIQ---GISEATQSISFSAMGEKQQQLAKVVLQDPAVESLTSF 599 Query: 609 LGVPNSGINLSYSNAGTIGTLD-GEILMALKEGHRPTEA----LVSLLRAELPRRFPGIE 663 +GV GT TL+ G +L+ LK H E ++ L+ +L PGI Sbjct: 600 IGVD-----------GTNATLNSGRMLINLKP-HDVREVSATDVIRRLQGKLAAEVPGIT 647 Query: 664 FFFQPADIVTQILNFGLPAAIDVQFTGPNMEAN--ARLAAELTKQIRQIPGAVDAHVHQR 721 + QP +T + + QFT + + + +L +++Q D + + Sbjct: 648 LYMQPVQDLTIEDSV---SRTQYQFTLEDADPAVLSTWVPKLIARLQQQSELADVATNLQ 704 Query: 722 LDGPSLDLRMDRTRLQQFGLSASNVGQNLLIALAGSSQTQPAFWLNPNNGVVYNIAVQSP 781 G + +DR + G++ + + L A ++ I QS Sbjct: 705 DQGLQAYIEIDRNAASRLGITTAAIDNALYNAFG--------------QRLISTIYTQSN 750 Query: 782 QYQV------------DSLDALL-------NIPVSPGANASTTPPQLLGNLVDVHAGRQM 822 QY+V +LD++ +P+S A + L+ N H G+ Sbjct: 751 QYRVVMEVKPEFQHGPAALDSIYLVTSGGGKVPLSSIATVTERTAPLVVN----HIGQFP 806 Query: 823 AVASRYNIAPAIDVYVSVQGTDLASVAGKVSALVEQIKPKLARGSQVVIRGQVETMQSSF 882 A +N+A +G L + A E+I + + +G Q+S Sbjct: 807 AATVSFNLA---------KGASLGEAVKAIKAAEEEI--GMPASTVTNFQGAALAFQASL 855 Query: 883 TGLGVGLAMAIVLVYLLVVVNFQSWIDAAIIIAALPAALAGIAWMLFITGTTLSVPALTG 942 + + AIV +Y+++ V ++S+I I++ LP+A G L I+GT L + + G Sbjct: 856 SNTLWLILAAIVTMYIVLGVLYESYIHPITILSTLPSAGVGALLSLMISGTDLGIIGIIG 915 Query: 943 AIMTMGVATANSILIVAFARQ-RREEGATPLAAALEAGSTRIRPVLMTALAMIIGMIPMA 1001 I+ +G+ N+I+++ FA + R EG +P A +A R RP+LMT +A ++G +P+ Sbjct: 916 IILLIGIVKKNAIMMIDFALEAERHEGKSPREAIYQACLLRFRPILMTTMAALLGALPLM 975 Query: 1002 LGLGEGAEQNAPLGRAVIGGLMLATVSTLFFVPVVFAGVH---QRLARRADQR 1051 LG G G+E PLG ++GGL+++ V TLF PV++ G +RL R QR Sbjct: 976 LGTGVGSELRQPLGITMVGGLLVSQVLTLFTTPVIYLGFDSLGRRLRARFGQR 1028 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,083,823 Number of extensions: 131913 Number of successful extensions: 642 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 569 Number of HSP's successfully gapped: 15 Length of query: 1063 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 968 Effective length of database: 1,170,045 Effective search space: 1132603560 Effective search space used: 1132603560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 136 (57.0 bits)