BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0319.p (1051 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump pr... 2124 0.0 gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump pr... 1239 0.0 gi|300309819|ref|YP_003773911.1| acriflavin resistance transmemb... 1162 0.0 gi|300313244|ref|YP_003777336.1| multidrug efflux system transme... 1004 0.0 gi|300309657|ref|YP_003773749.1| cation/multidrug efflux pump pr... 679 0.0 >gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 2124 bits (5503), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1049/1051 (99%), Positives = 1050/1051 (99%) Query: 1 MARFFIDRPIFAWVIAIIIMLGGMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLEDS 60 MARFFIDRPIFAWVIAIIIMLGGMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLEDS Sbjct: 1 MARFFIDRPIFAWVIAIIIMLGGMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLEDS 60 Query: 61 VTQVIEQQMKGLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTARLPQ 120 VTQVIEQQMKGLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTARLPQ Sbjct: 61 VTQVIEQQMKGLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTARLPQ 120 Query: 121 AVQNNGVTVTKASTDILMVLSLTSDDPRITSIDIGDFISSTLTDQISRVEGVGDVTAFGT 180 AVQNNGVTVTKASTDILMVLSLTSDDPRITSIDIGDFISSTLTDQISRVEGVGDVTAFGT Sbjct: 121 AVQNNGVTVTKASTDILMVLSLTSDDPRITSIDIGDFISSTLTDQISRVEGVGDVTAFGT 180 Query: 181 NYAMRIWIDPAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINATITARSKL 240 NYAMRIWIDPAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINATITARSKL Sbjct: 181 NYAMRIWIDPAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINATITARSKL 240 Query: 241 TTPDEFRNIIVKSSADGSVVKLSDVARVELGGESYQVASQQNGKPSSALAIQLATGANAL 300 TTPDEFRNIIVKSS DGSVVKLSDVARVELGGESYQVASQQNGKPSSALAIQLATGANAL Sbjct: 241 TTPDEFRNIIVKSSVDGSVVKLSDVARVELGGESYQVASQQNGKPSSALAIQLATGANAL 300 Query: 301 ATADAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIEAIVLVVLIMYLF 360 ATADAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIEAIVLVVLIMYLF Sbjct: 301 ATADAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIEAIVLVVLIMYLF 360 Query: 361 LQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 420 LQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER Sbjct: 361 LQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 420 Query: 421 LMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSAM 480 LMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSAM Sbjct: 421 LMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSAM 480 Query: 481 ALSVMVALTLTPALCATLLKPHAGGHVQQGRFFTWFNRSFDRSATRYQGGVAGLLKRGKR 540 ALSVMVALTLTPALCATLLKPHAGGHVQQGRFFTWFNRSFDRSATRYQGGVAGLLKRGKR Sbjct: 481 ALSVMVALTLTPALCATLLKPHAGGHVQQGRFFTWFNRSFDRSATRYQGGVAGLLKRGKR 540 Query: 541 GLLMYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTATVVKTVQEYFMN 600 GLLMYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTATVVKTVQEYFMN Sbjct: 541 GLLMYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTATVVKTVQEYFMN 600 Query: 601 KPESVESVLAIVGAGVGGNSQNGARAFIRLKDWEQRTGAGQSASELVRRANADLSKIRGA 660 KPESVESVLAIVGAGVGGNSQNGARAFIRLKDWEQRTGAGQSASELVRRANADLSKIRGA Sbjct: 601 KPESVESVLAIVGAGVGGNSQNGARAFIRLKDWEQRTGAGQSASELVRRANADLSKIRGA 660 Query: 661 RVFLMNPPAVRGLGQSSGFDLELKDVGGVGHDALLQARDQFLQLARSNALLANVRTTGLD 720 RVFLMNPPAVRGLGQSSGFDLELKDVGGVGHDALLQARDQFLQLARSNALLANVRTTGLD Sbjct: 661 RVFLMNPPAVRGLGQSSGFDLELKDVGGVGHDALLQARDQFLQLARSNALLANVRTTGLD 720 Query: 721 DTPQLRVAIDDRKADALSIATSDINATLATAMGGTYVNDFLSNGRVKKVYVQGDSAFRMQ 780 DTPQLRVAIDDRKADALSIATSDINATLATAMGGTYVNDFLSNGRVKKVYVQGDSAFRMQ Sbjct: 721 DTPQLRVAIDDRKADALSIATSDINATLATAMGGTYVNDFLSNGRVKKVYVQGDSAFRMQ 780 Query: 781 ADDLNRWYVRNAASQMVPFAAFMSSQWTYGPSLLERYNGVSSFEIVGEPAAGVSSGTAMA 840 ADDLNRWYVRNAASQMVPFAAFMSSQWTYGPSLLERYNGVSSFEIVGEPAAGVSSGTAMA Sbjct: 781 ADDLNRWYVRNAASQMVPFAAFMSSQWTYGPSLLERYNGVSSFEIVGEPAAGVSSGTAMA 840 Query: 841 EVEKLVAQLPAGIGFEWTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWSVPFAVI 900 EVEKLVAQLPAGIGFEWTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWSVPFAVI Sbjct: 841 EVEKLVAQLPAGIGFEWTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWSVPFAVI 900 Query: 901 LAVPLGIIGTVLLTGIFGMSNDVYFQVGLLTTVGLSAKNAILIVEFAKQLHESGKSLWEA 960 LAVPLGIIGTVLLTGIFGMSNDVYFQVGLLTTVGLSAKNAILIVEFAKQLHESGKSLWEA Sbjct: 901 LAVPLGIIGTVLLTGIFGMSNDVYFQVGLLTTVGLSAKNAILIVEFAKQLHESGKSLWEA 960 Query: 961 TLEAVQLRLRPILMTSLAFMFGVLPLAVASGAGSASRRAIGTGVLGGMLSATLLGIFFVP 1020 TLEAVQLRLRPILMTSLAFMFGVLPLAVASGAGSASRRAIGTGVLGGMLSATLLGIFFVP Sbjct: 961 TLEAVQLRLRPILMTSLAFMFGVLPLAVASGAGSASRRAIGTGVLGGMLSATLLGIFFVP 1020 Query: 1021 LFYYLIGAWLDRRAAKKPRQDDDHAMQKEGV 1051 LFYYLIGAWLDRRAA+KPRQDDDHAMQKEGV Sbjct: 1021 LFYYLIGAWLDRRAARKPRQDDDHAMQKEGV 1051 >gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1049 Score = 1239 bits (3207), Expect = 0.0, Method: Compositional matrix adjust. Identities = 623/1042 (59%), Positives = 791/1042 (75%), Gaps = 5/1042 (0%) Query: 1 MARFFIDRPIFAWVIAIIIMLGGMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLEDS 60 MARFFIDRPIFAWV+AII+ML G++S+ +L + QYP IAPP + I A Y GASAKTLED+ Sbjct: 1 MARFFIDRPIFAWVLAIIVMLAGIVSVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDT 60 Query: 61 VTQVIEQQMKGLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTARLPQ 120 VTQ+IEQ+MKGLD L YM+++S S+GS T++LTF GTNPD AQ+QVQNKL T LP Sbjct: 61 VTQIIEQKMKGLDRLSYMASTSESSGSVTITLTFENGTNPDTAQVQVQNKLSLATPLLPS 120 Query: 121 AVQNNGVTVTKASTDILMVLSLTSDDPRITSIDIGDFISSTLTDQISRVEGVGDVTAFGT 180 VQ G+TVTK++T+ L VL+ TS+D ++ D+ D++++ + D ISRVEGVGD T FG+ Sbjct: 121 EVQQQGITVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRVEGVGDTTLFGS 180 Query: 181 NYAMRIWIDPAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINATITARSKL 240 YAMRIW+DP KL Y L P D+ +A+QAQN +VS+G++G LPA QQINATITA+++L Sbjct: 181 QYAMRIWLDPNKLNSYGLTPLDVKNAIQAQNAQVSSGQLGGLPAAENQQINATITAQTRL 240 Query: 241 TTPDEFRNIIVKSSADGSVVKLSDVARVELGGESYQVASQQNGKPSSALAIQLATGANAL 300 T D+F+NI++++ G+ VKL DVAR+ELG ESY + NGKP++ LAI+LATGANAL Sbjct: 241 RTADQFQNIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANAL 300 Query: 301 ATADAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIEAIVLVVLIMYLF 360 T A+ K++AELE +FP MK++ YDTTPFVR+S+EEVV+TLIEA+VLV L+MYLF Sbjct: 301 DTVKAIDKRVAELEKFFPTGMKVQK--PYDTTPFVRISIEEVVRTLIEAVVLVFLVMYLF 358 Query: 361 LQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 420 LQN RAT IP I VPVVLLGTFG+LA+FG++INTLTMF MVLAIGLLVDDAIVVVENVER Sbjct: 359 LQNFRATLIPTIAVPVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENVER 418 Query: 421 LMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSAM 480 +MSEE L PK+ATRKSM +I+GALVG+A+VL+AVF+PMAFF GSTGVIYRQFSITIVSAM Sbjct: 419 VMSEEGLPPKQATRKSMGQISGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAM 478 Query: 481 ALSVMVALTLTPALCATLLKPHAGGH-VQQGRFFTWFNRSFDRSATRYQGGVAGLLKRGK 539 LSV+VAL LTPALCATLLKP A GH + FF WFNR FDRS RYQG V +L RG Sbjct: 479 TLSVLVALVLTPALCATLLKPAAKGHALATTGFFGWFNRQFDRSNIRYQGIVRHMLGRGW 538 Query: 540 RGLLMYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTATVVKTVQEYFM 599 R + YA++ + FM+LP FLP+EDQG L A +QLP+GAT +T V++ V+++F+ Sbjct: 539 RYMAAYAVLLALVVAGFMKLPVGFLPDEDQGTLFAIMQLPSGATKARTDEVIRQVEQHFL 598 Query: 600 -NKPESVESVLAIVGAGVGGNSQNGARAFIRLKDWEQRTGAGQSASELVRRANADLSKIR 658 ++ E+V V A+ G G+ QN AFI+LK W++R G G S +++ +A A + IR Sbjct: 599 VDQKEAVSGVFAVSGFSFAGSGQNMGFAFIKLKPWDERKGPGLSVTDVAAKAGAAFANIR 658 Query: 659 GARVFLMNPPAVRGLGQSSGFDLELKDVGGVGHDALLQARDQFLQLARSNALLANVRTTG 718 ARVF PPAV LG ++GFDL LKD +GH AL+QAR+Q L + L VR G Sbjct: 659 DARVFAFAPPAVSELGNATGFDLMLKDEANLGHAALMQARNQLLGELMQDKRLVAVRPNG 718 Query: 719 LDDTPQLRVAIDDRKADALSIATSDINATLATAMGGTYVNDFLSNGRVKKVYVQGDSAFR 778 L+DTP+ R+++D KA AL +A SDIN T+ATA G +YVNDF+ GRVKKV +QGD+ +R Sbjct: 719 LEDTPEFRLSVDTDKAGALGVAMSDINDTIATAWGSSYVNDFIDKGRVKKVMLQGDAQYR 778 Query: 779 MQADDLNRWYVRNAASQMVPFAAFMSSQWTYGPSLLERYNGVSSFEIVGEPAAG-VSSGT 837 M D++RWYVRN+A MVPF+AF ++ WT G LERYNGV S EI+G G SSG Sbjct: 779 MLPSDVDRWYVRNSAGTMVPFSAFSTASWTSGSPRLERYNGVPSMEILGMALPGAASSGE 838 Query: 838 AMAEVEKLVAQLPAGIGFEWTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWSVPF 897 AMA VE +A++P GIG+EWTG S QE+ S + +LY +SIL VFL LAALYESW+VPF Sbjct: 839 AMAIVEAALAKMPPGIGYEWTGLSLQEKASSGKTGILYGVSILIVFLALAALYESWAVPF 898 Query: 898 AVILAVPLGIIGTVLLTGIFGMSNDVYFQVGLLTTVGLSAKNAILIVEFAKQLHESGKSL 957 +VIL VPLG+ G +L + NDVYFQVGLLTT+GL+ KNAILIVEFAK L+E GKSL Sbjct: 899 SVILVVPLGVFGALLGAMLTWKMNDVYFQVGLLTTIGLACKNAILIVEFAKDLYEHGKSL 958 Query: 958 WEATLEAVQLRLRPILMTSLAFMFGVLPLAVASGAGSASRRAIGTGVLGGMLSATLLGIF 1017 EAT+EAV++RLRPILMTSLAF+ GVLP+ + SGAG+ ++ A+GT V+GGMLS T+L +F Sbjct: 959 VEATMEAVRMRLRPILMTSLAFILGVLPMVLGSGAGAGAQHALGTAVIGGMLSGTVLAVF 1018 Query: 1018 FVPLFYYLIGAWLDRRAAKKPR 1039 FVPLF+ +I R+ A P+ Sbjct: 1019 FVPLFFVIIMTLFGRKPADAPQ 1040 >gi|300309819|ref|YP_003773911.1| acriflavin resistance transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 1162 bits (3007), Expect = 0.0, Method: Compositional matrix adjust. Identities = 567/1046 (54%), Positives = 767/1046 (73%), Gaps = 6/1046 (0%) Query: 1 MARFFIDRPIFAWVIAIIIMLGGMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLEDS 60 M +FFIDRP+FAWV+AI IML G ++I L + QYP+IAPP + + ATY GA+A+TL+DS Sbjct: 1 MGKFFIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDS 60 Query: 61 VTQVIEQQMKGLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTARLPQ 120 VT +IEQ+M G D LQY+ + S + G +++TF+ TNPD+A + VQN+L++V ARLP Sbjct: 61 VTSLIEQEMNGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKRVEARLPA 120 Query: 121 AVQNNGVTVTKASTDILMVLSLTSDDPRITSIDIGDFISSTLTDQISRVEGVGDVTAFGT 180 AV GV VTK+ ++ L+ + L+S D ++ + +GD++S + ++I RV GVG FGT Sbjct: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGT 180 Query: 181 NYAMRIWIDPAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINATITARSKL 240 AMRIWIDP KL L P+D+T+A+QAQN V+ G +GALP+ QQI AT+ +L Sbjct: 181 ERAMRIWIDPNKLIGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAATVVVNGQL 240 Query: 241 TTPDEFRNIIVKSSADGSVVKLSDVARVELGGESYQVASQQNGKPSSALAIQLATGANAL 300 T+P++F NII++++A+G+ V+L DVARVE+GG+SY + + +GKPSS + +QL+ ANAL Sbjct: 241 TSPEQFGNIILRANANGATVRLRDVARVEVGGQSYDTSGRLDGKPSSFIGVQLSPTANAL 300 Query: 301 ATADAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIEAIVLVVLIMYLF 360 TA AV KK+ EL YFP +K I YDT+ FV++S+EEVVKTLIEAIVLV L+M+LF Sbjct: 301 GTATAVHKKMEELAKYFPTGVKY--TIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLF 358 Query: 361 LQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 420 LQNIR T IP I VPV LLGTF L +FG+SIN LTMFGMVLAIG+LVDDAIVVVENVER Sbjct: 359 LQNIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVER 418 Query: 421 LMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSAM 480 +MSEE LSP +ATRK+M +I+GAL+GI +VL AVFIPMAFFGG+ G IYRQFS+++V++M Sbjct: 419 IMSEEGLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASM 478 Query: 481 ALSVMVALTLTPALCATLLKPHAGGHVQQGR-FFTWFNRSFDRSATRYQGGVAGLLKRGK 539 SV++A TLTPALCAT+LKP GH + + FF WFNR F+ +A+ YQG + G+L + Sbjct: 479 VFSVLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNSTASGYQGIIGGMLNKAG 538 Query: 540 RGLLMYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTATVVKTVQEYFM 599 R +++Y LI + +L++RLP SFLP EDQG ++ +QLP GA+ +T VVK ++EY++ Sbjct: 539 RYMIVYVLIVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTSRTTAVVKQIEEYYL 598 Query: 600 NKPESVESVLAIVGAGVGGNSQNGARAFIRLKDWEQRTGAGQSASELVRRANADLSKIRG 659 P +VE +A++G GN QN A F LKDW QR + QSA + +A S+I+ Sbjct: 599 KDP-AVEHAIAVLGYSFSGNGQNAALVFTPLKDWSQRDKS-QSADAIAGKAFGAFSQIKD 656 Query: 660 ARVFLMNPPAVRGLGQSSGFDLELKDVGGVGHDALLQARDQFLQLARSNALLANVRTTGL 719 A VF +NPP + LG ++GF L+D G+GH AL+QAR+Q L +A + +LA VR GL Sbjct: 657 AIVFPLNPPPIPELGNATGFTFRLQDRAGLGHTALVQARNQILGMASQSKVLAGVRPEGL 716 Query: 720 DDTPQLRVAIDDRKADALSIATSDINATLATAMGGTYVNDFLSNGRVKKVYVQGDSAFRM 779 +D PQL++ ID KA+AL + S IN+ L+TA+G +YVNDF + GR ++V VQ D+ R+ Sbjct: 717 EDAPQLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNLGRQQRVIVQADAKRRL 776 Query: 780 QADDLNRWYVRNAASQMVPFAAFMSSQWTYGPSLLERYNGVSSFEIVGEPAAGVSSGTAM 839 Q +DL Y RN++ MVPF+AF++++W GP L RYNG + +I G A G S+G AM Sbjct: 777 QPEDLTNLYARNSSGTMVPFSAFVTAKWINGPVQLIRYNGYPAMKIAGGAAPGRSTGEAM 836 Query: 840 AEVEKLVAQLPAGIGFEWTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWSVPFAV 899 AE+E VA+LP G GFEWTG S +E+ SGNQAP LYA+S++ VFL LAALYES S+P AV Sbjct: 837 AEMESFVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLAV 896 Query: 900 ILAVPLGIIGTVLLTGIFGMSNDVYFQVGLLTTVGLSAKNAILIVEFAKQLHESGKSLWE 959 +L VPLGI+G +L + M NDVYF+VG++ VGLSAKNAILI+EFAK L GK L E Sbjct: 897 MLVVPLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGKGLIE 956 Query: 960 ATLEAVQLRLRPILMTSLAFMFGVLPLAVASGAGSASRRAIGTGVLGGMLSATLLGIFFV 1019 ATLEAV LR RPI+MTSLAF+ GVLPLA+ASGAGSAS+RAIGTGV+GGM++AT+L +F V Sbjct: 957 ATLEAVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRAIGTGVMGGMITATVLAVFLV 1016 Query: 1020 PLFYYLIGAWLDRRAAKKPRQDDDHA 1045 P+F+ ++ + + ++ + D +H+ Sbjct: 1017 PIFFVVVRKIF-KGSERQRKFDAEHS 1041 >gi|300313244|ref|YP_003777336.1| multidrug efflux system transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1033 Score = 1004 bits (2597), Expect = 0.0, Method: Compositional matrix adjust. Identities = 514/1036 (49%), Positives = 715/1036 (69%), Gaps = 5/1036 (0%) Query: 1 MARFFIDRPIFAWVIAIIIMLGGMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLEDS 60 M RFFIDRPIFAWV+A+ I+L G++++ L + +YP +APP V+I ATY GA+ +T+ D Sbjct: 1 MPRFFIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPPTVSINATYPGATPQTMNDG 60 Query: 61 VTQVIEQQMKGLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTARLPQ 120 V +IE+++ G+ NL Y +S+ ++G+A +S+TF GT+P++AQ+ VQNKL+ + ARLPQ Sbjct: 61 VISLIERELSGVKNLLYFESSADTSGTAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQ 120 Query: 121 AVQNNGVTVTKASTDILMVLSLTSDDPRITSIDIGDFISSTLTDQISRVEGVGDVTAFGT 180 V+ NGVTV A++ L+++SLTS D R + + D+++ + +++ R+EGVG V FG Sbjct: 121 TVRQNGVTVESAASSFLLMVSLTSVDGRYDEVRLNDYLARNIVEELRRMEGVGRVQLFGA 180 Query: 181 NYAMRIWIDPAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINATITARSKL 240 AMRIW+DP KL Y L +DI++A+ QN +++ G +G PA GQQI +T + +L Sbjct: 181 EQAMRIWLDPFKLNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAMPLTVQGQL 240 Query: 241 TTPDEFRNIIVKSSADGSVVKLSDVARVELGGESYQVASQQNGKPSSALAIQLATGANAL 300 +P +F I++K+ ADGS V L DVARVELG +SY A+++NGKP+ A+QL+ GANA+ Sbjct: 241 QSPAQFAAIVLKAKADGSRVLLGDVARVELGAQSYAFANRENGKPAGVAAVQLSPGANAV 300 Query: 301 ATADAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIEAIVLVVLIMYLF 360 TA A++ ++ EL P P M ++ Y+T PFV++S+++VV+TLIEA+VLV L+MYLF Sbjct: 301 RTAAAIQARMEELRPSLPQGMAF--SLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLF 358 Query: 361 LQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 420 LQN+R T IPAI P+ LLGT ++ + GYS+N LTMFGMVLAIG++VDDAIVVVENVER Sbjct: 359 LQNVRYTVIPAIVAPIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVER 418 Query: 421 LMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSAM 480 +M+ E L P+EAT K+M EITGA++GI +VL+AVFIPMA GGS GVIYRQFS+ + ++ Sbjct: 419 IMAHEGLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSVAMAVSI 478 Query: 481 ALSVMVALTLTPALCATLLKPHAGGHVQQGRFFTWFNRSFDRSATRYQGGVAGLLKRGKR 540 S +AL+LTPALCATLL+P GH + FF FNR+F+R RY+ + L+ RG R Sbjct: 479 LFSAFLALSLTPALCATLLRPVPAGHHDKRGFFGAFNRAFNRLTARYESALGRLIARGLR 538 Query: 541 GLLMYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTATVVKTVQEYFMN 600 +L+YA ++ + V LP++FLPEEDQG M QLP AT E+TA V + Y Sbjct: 539 MMLVYAALSGLLVVGMQALPSAFLPEEDQGYFMTSFQLPADATTERTARAVDQFERYLKG 598 Query: 601 KPESVESVLAIVGAGVGGNSQNGARAFIRLKDWEQRTGAGQSASELVRRANADLSKIRGA 660 + E + + L+++G G G+ N A AF LKDW++R G+ SA+E + A S + G Sbjct: 599 R-EDIGANLSVLGFGFSGSGPNAAMAFTELKDWKERKGS-TSAAEAMAAQAAMESGVDGM 656 Query: 661 RVFLMNPPAVRGLGQSSGFDLELKDVGGVGHDALLQARDQFLQLARSNALLANVRTTGLD 720 + L+ PPA+ LG SSGF + L+D G+ AL A Q L LA + L+ V + GL Sbjct: 657 VMSLL-PPAIEELGNSSGFAMRLQDRANQGYAALKAAEAQLLALAAKSRKLSGVYSDGLP 715 Query: 721 DTPQLRVAIDDRKADALSIATSDINATLATAMGGTYVNDFLSNGRVKKVYVQGDSAFRMQ 780 +++ ID KA AL ++ S I+ TL+ AMG YVNDF + GR+++V +Q ++ RMQ Sbjct: 716 AGASVQLEIDRHKAAALGVSFSSISDTLSAAMGSFYVNDFPNAGRMQQVILQAQASARMQ 775 Query: 781 ADDLNRWYVRNAASQMVPFAAFMSSQWTYGPSLLERYNGVSSFEIVGEPAAGVSSGTAMA 840 +D+ + YVRN + MVP A + + W P+ L+RY G + I G A GV+SG AMA Sbjct: 776 LEDVMKLYVRNQSGGMVPLAELVKASWREAPTQLQRYQGFPAVRISGSAAPGVASGEAMA 835 Query: 841 EVEKLVAQLPAGIGFEWTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWSVPFAVI 900 E+E+L QLP G WTG S QERLS QAPML A+S+L VFL LAALYESWS+P +V+ Sbjct: 836 EMERLAQQLPPGFAVAWTGQSLQERLSAAQAPMLMALSMLVVFLVLAALYESWSIPLSVM 895 Query: 901 LAVPLGIIGTVLLTGIFGMSNDVYFQVGLLTTVGLSAKNAILIVEFAKQLHESGKSLWEA 960 L VPLG++G V + M NDV+F+VG++T +GLSAKNAILIVEFA+QL G L EA Sbjct: 896 LVVPLGLVGAVAAVILRDMPNDVFFKVGMITVIGLSAKNAILIVEFARQLRSEGMGLVEA 955 Query: 961 TLEAVQLRLRPILMTSLAFMFGVLPLAVASGAGSASRRAIGTGVLGGMLSATLLGIFFVP 1020 ++A LRLRPILMTSLAF GV+PL +ASGA + ++RAIGTGV GGM+SAT+L + FVP Sbjct: 956 AIKASVLRLRPILMTSLAFALGVVPLMLASGASAETQRAIGTGVFGGMVSATVLAVLFVP 1015 Query: 1021 LFYYLIGAWLDRRAAK 1036 +F+ L+ R A K Sbjct: 1016 VFFVLVLGCAQRLARK 1031 >gi|300309657|ref|YP_003773749.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1071 Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/1055 (41%), Positives = 657/1055 (62%), Gaps = 35/1055 (3%) Query: 1 MARFFIDRPIFAWVIAIIIMLGGMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLEDS 60 +++FFIDRPIFA V++++++LGG++++ L + +YP++ PP V ++A Y GA+ K + ++ Sbjct: 3 ISKFFIDRPIFAGVLSVLLLLGGVLAMLQLPISEYPEVVPPSVVVRAQYPGANPKVIAET 62 Query: 61 VTQVIEQQMKGLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTARLPQ 120 V +E+Q+ G++N+ YM + ++S G+ T+++ F G +PD AQ VQN++ Q RLP+ Sbjct: 63 VASPLEEQINGVENMLYMQSQANSDGNLTITVNFRLGVDPDKAQQLVQNRVSQALPRLPE 122 Query: 121 AVQNNGVTVTKASTDILMVLSLTSDDPRITSIDIGDFISSTLTDQISRVEGVGDVTAFGT 180 VQ GVT K+S + MV+ LTS D R + + ++ + D+++R++GVG+V FG+ Sbjct: 123 DVQRLGVTTLKSSPTLTMVVHLTSPDNRYDTTYLRNYAVLNVKDRLARIQGVGEVGLFGS 182 Query: 181 -NYAMRIWIDPAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINATITARSK 239 NYAMR+W+DP K+ + L +D+ A++ QN +V+AG IGA P+ P + ++ A+ + Sbjct: 183 GNYAMRVWLDPNKVAQRGLTATDVVRAIREQNVQVAAGVIGASPSSPETPLQLSVNAQGR 242 Query: 240 LTTPDEFRNIIVKSSADGSVVKLSDVARVELGGESYQVASQQNGKPSSALAIQLATGANA 299 L T EFR+II+K+S DG+ +L DVARVEL Y + S + KP+ A+ I A GANA Sbjct: 243 LKTEGEFRDIILKASPDGATTRLGDVARVELAASEYGLRSLLDNKPAVAIPIFQAPGANA 302 Query: 300 LATADAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIEAIVLVVLIMYL 359 L + V+ + EL FP+S+ +I YD T FVR S+E VV TL+EAI LVV+++ + Sbjct: 303 LDVSTQVRAAMKELSADFPSSVSY--SIVYDPTQFVRASIEAVVHTLLEAIALVVIVVII 360 Query: 360 FLQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVE 419 FLQ RA+ IP + VPV ++GTF ++ FGY+IN L++FGMVLAIG++VDDAIVVVENVE Sbjct: 361 FLQTWRASIIPLLAVPVSIIGTFSLMLGFGYTINALSLFGMVLAIGIVVDDAIVVVENVE 420 Query: 420 RLMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSA 479 R + LSP++AT ++MQE++G ++ IA+ L AVF+P+AF G TG Y+QF++TI + Sbjct: 421 RNIGA-GLSPRDATYRAMQEVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAIS 479 Query: 480 MALSVMVALTLTPALCATLLKPHAGGHVQQGRFFTWFNRSFDR---------------SA 524 +S +LTL+PAL A LLK H G W R DR ++ Sbjct: 480 TVISAFNSLTLSPALAALLLKGH-------GDKPDWLTRQMDRFLGGFFIRFNRFFNRAS 532 Query: 525 TRYQGGVAGLLKRGKRGLLMYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPTGATA 584 Y GV G++KR + +Y L+ A + +P F+P +D+ L+A QLP GA+ Sbjct: 533 DNYGHGVTGVIKRKGATMGVYVLLLAATLGISYIVPGGFVPGQDKQYLVAFAQLPNGASI 592 Query: 585 EQTATVVKTVQEYFMNKPESVESVLAIVGAGVGG--NSQNGARAFIRLKDWEQRTGAGQS 642 +++ V++ + + + +P V S +A G + G NS + F+ LK +E+R S Sbjct: 593 DRSEEVMRKMSDIMLKEP-GVASAIAFPGLSINGFTNSSSAGIVFVGLKPFEERKSKDLS 651 Query: 643 ASELVRRANADLSKIRGARVFLMNPPAVRGLGQSSGFDLELKDVGGVGHDALLQARDQFL 702 + + N I+ A + PP V GLG GF ++++D +G+ L +A F+ Sbjct: 652 GNAIAASLNKKFGSIKEAFTAVFPPPPVMGLGTLGGFKMQIEDRDALGYAELDKAAQAFM 711 Query: 703 QLARSNALLANVRTTGLDDTPQLRVAIDDRKADALSIATSDINATLATAMGGTYVNDFLS 762 + A L + ++ + PQL V +D KA L I +D+ T+ +G YVNDF Sbjct: 712 KAAAKEPALGPMFSSYQINVPQLDVELDRVKAKQLGIPVTDVFNTMQIYLGSLYVNDFNR 771 Query: 763 NGRVKKVYVQGDSAFRMQADDLNRWYVRNAASQMVPFAAFMSSQWTYGPSLLERYNGVSS 822 GRV +V Q D+ FR +A+D+ + RN A +MVP ++ + + T+GP ++ RYNG ++ Sbjct: 772 FGRVYQVRAQADAPFRAKAEDIAQLKTRNDAGEMVPLSSVVKVKQTFGPEMVVRYNGYTA 831 Query: 823 FEIVGEPAAGVSSG-TAMAEVEKLVAQLPAGIGFEWTGSSYQERLSGNQAPMLYAISILF 881 +I G PA G SS A A LP GI FEWT +YQ+ L+GN ++ IS+L Sbjct: 832 ADINGGPAPGYSSDQAQAAAERVAAATLPRGIKFEWTDLTYQKILAGNAGVWVFPISVLL 891 Query: 882 VFLCLAALYESWSVPFAVILAVPLGIIGTVLLTGIFGM--SNDVYFQVGLLTTVGLSAKN 939 VFL LAALYES ++P AVIL VP+ I+ LTG++ N+++ Q+GL+ VGLSAKN Sbjct: 892 VFLVLAALYESLTLPLAVILIVPMSILAA--LTGVWLTRGDNNIFTQIGLMVLVGLSAKN 949 Query: 940 AILIVEFAKQLHESGKSLWEATLEAVQLRLRPILMTSLAFMFGVLPLAVASGAGSASRRA 999 AILIVEFA++L G++ +A +EA +LRLRPILMTS+AF+ GV+PL +SGAGS R A Sbjct: 950 AILIVEFARELEMQGRTAVQAAIEASRLRLRPILMTSIAFIMGVVPLVTSSGAGSEMRHA 1009 Query: 1000 IGTGVLGGMLSATLLGIFFVPLFYYLIGAWLDRRA 1034 +G V GML TL G+F P+FY L+ +DRRA Sbjct: 1010 MGIAVFFGMLGVTLFGLFLTPVFYVLLRT-IDRRA 1043 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.133 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,890,497 Number of extensions: 112623 Number of successful extensions: 592 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 502 Number of HSP's successfully gapped: 12 Length of query: 1051 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 956 Effective length of database: 1,170,045 Effective search space: 1118563020 Effective search space used: 1118563020 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 136 (57.0 bits)