BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0315.p
         (284 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313890|ref|YP_003777982.1| nucleoside-diphosphate-sugar ep...   582   e-167
gi|300312049|ref|YP_003776141.1| UDP-glucose 4-epimerase [Herbas...    61   1e-10

>gi|300313890|ref|YP_003777982.1| nucleoside-diphosphate-sugar
           epimerase [Herbaspirillum seropedicae SmR1]
          Length = 284

 Score =  582 bits (1499), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 283/284 (99%), Positives = 283/284 (99%)

Query: 1   MSQDQDVAAWQTARFSRLLLTGAAGGVGKQLRARLASFAEVVRVADLASAMAAVDPAAAH 60
           MSQDQDVAAWQTARFSRLLLTGAAGGVGKQLRARLASFAEVVRVADLASAMAAVDPAAAH
Sbjct: 1   MSQDQDVAAWQTARFSRLLLTGAAGGVGKQLRARLASFAEVVRVADLASAMAAVDPAAAH 60

Query: 61  EEVLGCDLADRAAVDAMVAGCEAIIHLGGVSVERPFEEILEANIKGVFHIYEAARRHGVK 120
           EE LGCDLADRAAVDAMVAGCEAIIHLGGVSVERPFEEILEANIKGVFHIYEAARRHGVK
Sbjct: 61  EEALGCDLADRAAVDAMVAGCEAIIHLGGVSVERPFEEILEANIKGVFHIYEAARRHGVK 120

Query: 121 RVIFASSNHVTGFYGQDERIDARDMKRPDGYYGLSKSYGEDMAQFYFDRYGVETVSIRIG 180
           RVIFASSNHVTGFYGQDERIDARDMKRPDGYYGLSKSYGEDMAQFYFDRYGVETVSIRIG
Sbjct: 121 RVIFASSNHVTGFYGQDERIDARDMKRPDGYYGLSKSYGEDMAQFYFDRYGVETVSIRIG 180

Query: 181 SIFPEATNRRMLASWMSMDDFEQLLRRSLFIPDVGHTIVYGMSANAKTWWDNRYAAHLGY 240
           SIFPEATNRRMLASWMSMDDFEQLLRRSLFIPDVGHTIVYGMSANAKTWWDNRYAAHLGY
Sbjct: 181 SIFPEATNRRMLASWMSMDDFEQLLRRSLFIPDVGHTIVYGMSANAKTWWDNRYAAHLGY 240

Query: 241 APKDSSEIFRAKVEAQPMPAPDDPVLTLQGGAFTTAGPFDPLAD 284
           APKDSSEIFRAKVEAQPMPAPDDPVLTLQGGAFTTAGPFDPLAD
Sbjct: 241 APKDSSEIFRAKVEAQPMPAPDDPVLTLQGGAFTTAGPFDPLAD 284


>gi|300312049|ref|YP_003776141.1| UDP-glucose 4-epimerase
           [Herbaspirillum seropedicae SmR1]
          Length = 347

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 17/183 (9%)

Query: 16  SRLLLTGAAGGVGKQLRARLASFAEVV---------RVADLASAMAAVDPAA-AHEEVLG 65
            R L+TG AG +G  L ARL +  + V         R A+L    A V  AA A+   + 
Sbjct: 16  KRWLITGVAGFIGSNLLARLLTLGQQVTGLDNFSTGRQANLEEVRAEVGAAAWANFRFIE 75

Query: 66  CDLADRAAVDAMVAGCEAIIH---LGGV--SVERPFEEILEANIKGVFHIYEAARRHGVK 120
            D+ D A       G + ++H   LG V  S+E P    L  N+ G  ++  AAR  GV 
Sbjct: 76  GDICDAATCLRACDGADYVLHQAALGSVSRSIEDPVRTNLN-NVNGFLNMLVAARDAGVA 134

Query: 121 RVIFASSNHVTGFYGQDERIDARDMKRPDGYYGLSKSYGEDMAQFYFDRYGVETVSIRIG 180
           R ++A+S+   G +    +++   + +P   Y ++K   E  A+ +   YG+E++ +R  
Sbjct: 135 RFVYAASSSTYGDHPGLPKVE-EVIGKPLSPYAVTKYVNELYAEVFARCYGMESIGLRYF 193

Query: 181 SIF 183
           ++F
Sbjct: 194 NVF 196


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 872,256
Number of extensions: 33844
Number of successful extensions: 148
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 2
Length of query: 284
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 200
Effective length of database: 1,222,130
Effective search space: 244426000
Effective search space used: 244426000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)