BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0312.p (264 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPa... 534 e-153 gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPa... 317 6e-88 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 309 1e-85 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 306 2e-84 gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporte... 281 3e-77 >gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 264 Score = 534 bits (1376), Expect = e-153, Method: Compositional matrix adjust. Identities = 262/264 (99%), Positives = 263/264 (99%) Query: 1 MSAIAKPEPAPHLRPVAASREPQPVIVKLDQVYKSFGDNQVLKGVSFEVARGEMIAIIGA 60 MSAIAKPEPAPHLRPV ASREPQPVIVKLDQVYKSFGDNQVLKGVSFEVARGEMIAIIGA Sbjct: 1 MSAIAKPEPAPHLRPVVASREPQPVIVKLDQVYKSFGDNQVLKGVSFEVARGEMIAIIGA 60 Query: 61 SGSGKSTALRCIDRLETIDSGSIEVAGIRVDDPQVDLHKLRREVGIVFQSYNLFPHLNVL 120 SGSGKSTALRCIDRLETIDSGSIEVAGIRVDDPQVDLHKLRREVGIVFQSYNLFPHLNVL Sbjct: 61 SGSGKSTALRCIDRLETIDSGSIEVAGIRVDDPQVDLHKLRREVGIVFQSYNLFPHLNVL 120 Query: 121 ENVMLALRHVKQQDKAEARRVALAALAQVGLDEKANAYPEQLSGGQQQRVAIARSLAMAP 180 ENVMLALRHVKQQDKAEARRVALAALAQVGLDEKANAYPEQLSGGQQQRVAIARSLAMAP Sbjct: 121 ENVMLALRHVKQQDKAEARRVALAALAQVGLDEKANAYPEQLSGGQQQRVAIARSLAMAP 180 Query: 181 KVMLFDEVTSALDPQLTGEVLRVMEDLAANGMTMLLVTHEMNFAKRVADRIIYMHQGRVW 240 KVMLFDEVTSALDPQLTGEVLRVMEDLAANGMTMLLVTHEMNFAKRVADRIIYMHQGRVW Sbjct: 181 KVMLFDEVTSALDPQLTGEVLRVMEDLAANGMTMLLVTHEMNFAKRVADRIIYMHQGRVW 240 Query: 241 EVGPGEMLDHPHTPELQAFLAADL 264 EVGPGEMLDHP+TPELQAFLAADL Sbjct: 241 EVGPGEMLDHPYTPELQAFLAADL 264 >gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 317 bits (812), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 155/240 (64%), Positives = 192/240 (80%) Query: 25 VIVKLDQVYKSFGDNQVLKGVSFEVARGEMIAIIGASGSGKSTALRCIDRLETIDSGSIE 84 +V+L V+K FG N VL+GVSF+VARGE++AIIG SGSGKSTALRCI+RLE ID+G I Sbjct: 3 TVVELQGVHKRFGSNTVLRGVSFQVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQIS 62 Query: 85 VAGIRVDDPQVDLHKLRREVGIVFQSYNLFPHLNVLENVMLALRHVKQQDKAEARRVALA 144 V G + +DL LRR+VGIVFQ YNLFPHL VL+N+ L VK+ +A+ +A Sbjct: 63 VCGHALHAAGLDLRGLRRDVGIVFQGYNLFPHLTVLQNITLGPTAVKRMPADQAQTLAQQ 122 Query: 145 ALAQVGLDEKANAYPEQLSGGQQQRVAIARSLAMAPKVMLFDEVTSALDPQLTGEVLRVM 204 LA+VGL +KA AYPEQLSGGQQQRVAIARSLA+ P++MLFDEVTSALDP+LTGEVL+VM Sbjct: 123 VLARVGLADKAGAYPEQLSGGQQQRVAIARSLALQPQLMLFDEVTSALDPELTGEVLKVM 182 Query: 205 EDLAANGMTMLLVTHEMNFAKRVADRIIYMHQGRVWEVGPGEMLDHPHTPELQAFLAADL 264 E +A+ GMTM+LVTHEM FA+RVAD++I+MHQG+VWE G E+LD P TPEL++F+ L Sbjct: 183 EQMASEGMTMILVTHEMAFARRVADQVIFMHQGQVWEQGGPEILDAPVTPELRSFVGTGL 242 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 309 bits (792), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 147/241 (60%), Positives = 192/241 (79%), Gaps = 2/241 (0%) Query: 26 IVKLDQVYKSFGDNQVLKGVSFEVARGEMIAIIGASGSGKSTALRCIDRLETIDSGSIEV 85 IVK+ ++KSFG N+VL GVS +V +G+M+AIIG SGSGKST LRC++ LE +D+G I+V Sbjct: 4 IVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIQV 63 Query: 86 AGIRVDDP-QVDLHKLRREVGIVFQSYNLFPHLNVLENVMLALRHVKQQDKAEARRVALA 144 G + P +++L +LR++VGIVFQSYNLFPHL V N+ LAL +K+ +A+ +A Sbjct: 64 CGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAKTIAHK 123 Query: 145 ALAQVGLDEKANAYPEQLSGGQQQRVAIARSLAMAPKVMLFDEVTSALDPQLTGEVLRVM 204 L VGL+ K +AYPEQLSGGQ QRVAIARSLAMAP++MLFDEVTSALDP+LT EVL+VM Sbjct: 124 VLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLKVM 183 Query: 205 EDLAANGMTMLLVTHEMNFAKRVADRIIYMHQGRVWEVG-PGEMLDHPHTPELQAFLAAD 263 EDLA GMTM+LVTHEM FA+++AD +++MHQG+VWE+G P E+ HP T ELQ F+++D Sbjct: 184 EDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSHPKTAELQKFVSSD 243 Query: 264 L 264 L Sbjct: 244 L 244 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 306 bits (783), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 151/238 (63%), Positives = 181/238 (76%), Gaps = 1/238 (0%) Query: 26 IVKLDQVYKSFGDNQVLKGVSFEVARGEMIAIIGASGSGKSTALRCIDRLETIDSGSIEV 85 IV+++ + K FG NQVL G+S V RG+++AIIG SGSGKST LRCI+ LETID GSI V Sbjct: 3 IVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSITV 62 Query: 86 AGIRVDDPQVDLHKLRREVGIVFQSYNLFPHLNVLENVMLALRHVKQQDKAEARRVALAA 145 AG ++ L +LR++VG+VFQ YNLFPHL V EN+ML+ R VK+ AR A+ Sbjct: 63 AGHKLTHKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARETAIKV 122 Query: 146 LAQVGLDEKANAYPEQLSGGQQQRVAIARSLAMAPKVMLFDEVTSALDPQLTGEVLRVME 205 L QVGLD K +AYPEQLSGGQQQRVAIARSLAM P+VMLFDEVTSALDP+LT EVL+VME Sbjct: 123 LKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKVME 182 Query: 206 DLAANGMTMLLVTHEMNFAKRVADRIIYMHQGRVWEVGPG-EMLDHPHTPELQAFLAA 262 +LA GMTMLLVTHEM FA+RVAD ++MHQG+VWE P E P TPE + F+ A Sbjct: 183 ELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEARQFIGA 240 >gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 281 bits (720), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 136/237 (57%), Positives = 181/237 (76%), Gaps = 1/237 (0%) Query: 26 IVKLDQVYKSFGDNQVLKGVSFEVARGEMIAIIGASGSGKSTALRCIDRLETIDSGSIEV 85 ++ +D V K FGDN+VLKG+S +V GE+IAIIG SGSGKST LRCI+ LE+ID G+I V Sbjct: 3 LIAIDNVKKRFGDNEVLKGISLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNISV 62 Query: 86 AGIRVDDPQVDLHKLRREVGIVFQSYNLFPHLNVLENVMLALRHVKQQDKAEARRVALAA 145 AG ++ +++L LR +VG++FQ +NLFPHL+V NVM+A VK +AEA + A A Sbjct: 63 AGAKLGASELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGVSEAEAMKTAKAN 122 Query: 146 LAQVGLDEKANAYPEQLSGGQQQRVAIARSLAMAPKVMLFDEVTSALDPQLTGEVLRVME 205 L +VGL K +AYP+QLSGGQQQRVAIAR+L+M+P+ +L DE+TSALDP+L EVL VM Sbjct: 123 LEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTVMR 182 Query: 206 DLAANGMTMLLVTHEMNFAKRVADRIIYMHQGRVWEVG-PGEMLDHPHTPELQAFLA 261 LA GMT+L+VTHEM FA+ V +R+++MHQG+V E+G P E+ +P TPELQ F+ Sbjct: 183 GLAKEGMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFIG 239 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 789,074 Number of extensions: 30562 Number of successful extensions: 593 Number of sequences better than 1.0e-08: 128 Number of HSP's gapped: 322 Number of HSP's successfully gapped: 143 Length of query: 264 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 181 Effective length of database: 1,226,865 Effective search space: 222062565 Effective search space used: 222062565 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)