BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0311.p (267 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313886|ref|YP_003777978.1| amino acid ABC transporter peri... 541 e-155 gi|300309582|ref|YP_003773674.1| amino acid ABC transporter/sign... 243 2e-65 gi|300313169|ref|YP_003777261.1| amino acid transport periplasmi... 201 6e-53 gi|300313535|ref|YP_003777627.1| amino acid ABC transporter/sign... 156 2e-39 gi|300311590|ref|YP_003775682.1| amino acid ABC transporter/sign... 153 2e-38 >gi|300313886|ref|YP_003777978.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 541 bits (1394), Expect = e-155, Method: Compositional matrix adjust. Identities = 266/267 (99%), Positives = 266/267 (99%) Query: 1 MQHTPLRRAARTAIAALVLGLTAHAALADQLDDIKKAGKIRIATTSSTPLFGYSDEKLQL 60 MQHTPLRRAARTAIAALVLGLTAHAALADQLDDIKKAGKIRIATTSSTPLFGYSDEKLQL Sbjct: 1 MQHTPLRRAARTAIAALVLGLTAHAALADQLDDIKKAGKIRIATTSSTPLFGYSDEKLQL 60 Query: 61 AGSDVEAARLLAQDLGVQLDLIPVANAARVPTLQANRADIVVGSLSITPERLKVIDFSTP 120 AGSDVEAARLLAQDLGVQLDLIPVANAARVPTLQANRADIVVGSLSITPERLKVIDFSTP Sbjct: 61 AGSDVEAARLLAQDLGVQLDLIPVANAARVPTLQANRADIVVGSLSITPERLKVIDFSTP 120 Query: 121 YAVISLIIGAPKSMAIKDYADLNGKRIGVTRATPNDTLTTQNAKGAEIMRYEDDATLITS 180 YAVISLIIGAPKSM IKDYADLNGKRIGVTRATPNDTLTTQNAKGAEIMRYEDDATLITS Sbjct: 121 YAVISLIIGAPKSMVIKDYADLNGKRIGVTRATPNDTLTTQNAKGAEIMRYEDDATLITS 180 Query: 181 MVTGQVDVFSSTPSNLQEMQKKAPGKNLEMKFEQKAFDLGIAINKNQPRLKEWIDGWVKT 240 MVTGQVDVFSSTPSNLQEMQKKAPGKNLEMKFEQKAFDLGIAINKNQPRLKEWIDGWVKT Sbjct: 181 MVTGQVDVFSSTPSNLQEMQKKAPGKNLEMKFEQKAFDLGIAINKNQPRLKEWIDGWVKT 240 Query: 241 NMKNGKLNAIYKKYHGRDLPAAVQNPA 267 NMKNGKLNAIYKKYHGRDLPAAVQNPA Sbjct: 241 NMKNGKLNAIYKKYHGRDLPAAVQNPA 267 >gi|300309582|ref|YP_003773674.1| amino acid ABC transporter/signal transduction system periplasmic binding protein [Herbaspirillum seropedicae SmR1] Length = 269 Score = 243 bits (619), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 119/241 (49%), Positives = 167/241 (69%), Gaps = 1/241 (0%) Query: 28 ADQLDDIKKAGKIRIATTSSTPLFGYSDEKLQLAGSDVEAARLLAQDLGVQLDLIPVANA 87 ADQLD I A K+R+A + P + D+KL+L GSDVE A+ +A+D G++L+++P Sbjct: 28 ADQLDTILAAKKLRVAIDLAVPPYSMKDDKLRLIGSDVETAQRMAKDFGLELEVVPTTLT 87 Query: 88 ARVPTLQANRADIVVGSLSITPERLKVIDFSTPYAVISLIIGAPKSMAIKDYADLNGKRI 147 RVP LQ N+ADIV+ + SITPER KVIDFS PYA I +++GAP+SM I ADL GK+I Sbjct: 88 NRVPYLQTNKADIVISAFSITPERAKVIDFSVPYAPILVVVGAPRSMKITSPADLAGKKI 147 Query: 148 GVTRATPND-TLTTQNAKGAEIMRYEDDATLITSMVTGQVDVFSSTPSNLQEMQKKAPGK 206 TR T ND LT A I R++DDAT +T+MV+GQ D+++++P L+ + +K P + Sbjct: 148 IATRGTTNDQELTKIAPSSATITRFDDDATSMTAMVSGQADIWATSPMLLKVVNQKNPSR 207 Query: 207 NLEMKFEQKAFDLGIAINKNQPRLKEWIDGWVKTNMKNGKLNAIYKKYHGRDLPAAVQNP 266 ++E K KA L + + K +PRLKE IDGW++TN+ NG+LN IYKKYH +LP + +P Sbjct: 208 DIESKLTLKANLLAVGLRKGEPRLKEKIDGWIRTNLSNGELNTIYKKYHEAELPPEILHP 267 Query: 267 A 267 A Sbjct: 268 A 268 >gi|300313169|ref|YP_003777261.1| amino acid transport periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 201 bits (511), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 107/253 (42%), Positives = 151/253 (59%), Gaps = 3/253 (1%) Query: 15 AALVLGLTAHAALADQLD--DIKKAGKIRIATTSSTPLFGYSDEKLQLAGSDVEAARLLA 72 AA+VLGL A A DIK K+ +A P FG ++ KL+ GSDVE ARLLA Sbjct: 12 AAVVLGLACFAQAAHADALADIKARKKVLVAIDLGAPPFGMTNAKLEPQGSDVETARLLA 71 Query: 73 QDLGVQLDLIPVANAARVPTLQANRADIVVGSLSITPERLKVIDFSTPYAVISLIIGAPK 132 +DLGV+L+++ V R+P L +AD+V+ S SITPER KV+ F+ PY ++ APK Sbjct: 72 KDLGVELEIVQVTGPNRIPFLMTGKADMVISSFSITPERQKVVAFTQPYGASQFVVAAPK 131 Query: 133 SMAIKDYADLNGKRIGVTRATPNDTLTTQNA-KGAEIMRYEDDATLITSMVTGQVDVFSS 191 IK DL GKR+ V R D+L T A KG I+R++DDAT+ ++++GQVD + Sbjct: 132 GENIKSLNDLVGKRVAVVRGNMQDSLLTPIAPKGTNIVRFDDDATVTAAIISGQVDALCT 191 Query: 192 TPSNLQEMQKKAPGKNLEMKFEQKAFDLGIAINKNQPRLKEWIDGWVKTNMKNGKLNAIY 251 S + K+ P KNLE KF K I + K +P L++W++ W+ N+KNGKL IY Sbjct: 192 PNSLASAIAKQNPSKNLETKFAIKDIPYAIGLRKGEPALEKWLNEWISANLKNGKLPGIY 251 Query: 252 KKYHGRDLPAAVQ 264 +++ G +P Q Sbjct: 252 QQWVGSPMPDLAQ 264 >gi|300313535|ref|YP_003777627.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 156 bits (394), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 96/255 (37%), Positives = 145/255 (56%), Gaps = 8/255 (3%) Query: 17 LVLGLTAHA-------ALADQLDDIKKAGKIRIATTSSTPLFGYSDEKLQLAGSDVEAAR 69 L+LGL A A A AD LDDI+K G +R+A + P FG D L+ G D++ A Sbjct: 6 LLLGLMAGAMMFSASVARADALDDIQKHGTLRVAVPADFPPFGSVDADLKPQGLDIDVAT 65 Query: 70 LLAQDLGVQLDLIPVANAARVPTLQANRADIVVGSLSITPERLKVIDFSTPYAVISLIIG 129 L+A+ LGV+++LIPV++A R+P L + D+V+ S+ ER KVIDFS YA + Sbjct: 66 LIAKKLGVKVELIPVSSANRIPYLTTKKVDLVISSMGKNAEREKVIDFSAAYAPFFNGVF 125 Query: 130 APKSMAIKDYADLNGKRIGVTRATPND-TLTTQNAKGAEIMRYEDDATLITSMVTGQVDV 188 P +++K ADL GK I VTR + D LT A + RYED+ + I+S ++GQV + Sbjct: 126 GPADLSVKSAADLAGKTIAVTRGSVEDLELTKIVPASATVKRYEDNNSTISSFLSGQVQL 185 Query: 189 FSSTPSNLQEMQKKAPGKNLEMKFEQKAFDLGIAINKNQPRLKEWIDGWVKTNMKNGKLN 248 ++ + + P K E KF K I +NK + +L++ +D + + K+G L+ Sbjct: 186 VATGNVVAAAIIARNPPKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAESKKDGSLS 245 Query: 249 AIYKKYHGRDLPAAV 263 AI +K+ G LPA + Sbjct: 246 AISQKWLGMPLPAGL 260 >gi|300311590|ref|YP_003775682.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 153 bits (386), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 99/265 (37%), Positives = 145/265 (54%), Gaps = 9/265 (3%) Query: 1 MQHTPLRRAARTAIAALVLGLTAHA---ALADQLDDIKKAGKIRIATTSSTPLFGYSDEK 57 MQ +P R + A+VLGL A A AD L DI+K G +RI FG + Sbjct: 1 MQMSP-----RKTMLAVVLGLAAMQGGLARADALADIQKNGVVRIGVPQDFAPFGSVNTD 55 Query: 58 LQLAGSDVEAARLLAQDLGVQLDLIPVANAARVPTLQANRADIVVGSLSITPERLKVIDF 117 LQL G D++ ARL+AQ +GV+L L+PVA+A R+ LQ ++AD+V+ +L ER KVIDF Sbjct: 56 LQLQGLDIDVARLIAQKMGVKLQLVPVASANRIAYLQTHKADLVISTLGRNAEREKVIDF 115 Query: 118 STPYAVISLIIGAPKSMAIKDYADLNGKRIGVTRATPNDTLTTQNA-KGAEIMRYEDDAT 176 S PYA + + S+ + ADL K +GV R T D T A K A I RYED+ Sbjct: 116 SQPYAPYNNSVFGVASVKVSGPADLADKTVGVARGTFQDLQLTDTAPKSATIKRYEDNNA 175 Query: 177 LITSMVTGQVDVFSSTPSNLQEMQKKAPGKNLEMKFEQKAFDLGIAINKNQPRLKEWIDG 236 +I++ V+GQV + + + +KAP +K+ + + +NK +P L ++ Sbjct: 176 MISAYVSGQVQLVGTGDFVAYALAEKAPNNKPVLKYIIQESACNVGLNKGEPALLAKVNE 235 Query: 237 WVKTNMKNGKLNAIYKKYHGRDLPA 261 + K+G+LN I +K+ LPA Sbjct: 236 ALTAAKKSGELNGIVQKWLNVPLPA 260 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.131 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 786,259 Number of extensions: 30430 Number of successful extensions: 147 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 130 Number of HSP's successfully gapped: 17 Length of query: 267 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 183 Effective length of database: 1,222,130 Effective search space: 223649790 Effective search space used: 223649790 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)