BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0297.p
         (176 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313872|ref|YP_003777964.1| 2,3-dihydro-2,3-dihydroxybenzoa...   359   e-101
gi|300310740|ref|YP_003774832.1| isochorismatase family protein ...    56   1e-09
gi|300310060|ref|YP_003774152.1| nicotinamidase-like protein [He...    55   2e-09

>gi|300313872|ref|YP_003777964.1| 2,3-dihydro-2,3-dihydroxybenzoate
           synthetase [Herbaspirillum seropedicae SmR1]
          Length = 176

 Score =  359 bits (921), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/176 (100%), Positives = 176/176 (100%)

Query: 1   MPTALLIIDIQHALCHGPDAVENSAAVIDRVNQLADQARAAGAPVIFVQHEDEDALQRGS 60
           MPTALLIIDIQHALCHGPDAVENSAAVIDRVNQLADQARAAGAPVIFVQHEDEDALQRGS
Sbjct: 1   MPTALLIIDIQHALCHGPDAVENSAAVIDRVNQLADQARAAGAPVIFVQHEDEDALQRGS 60

Query: 61  EGWQLMPGLHQQPEDLHLPKRGSDAFHHTELQAMLKMRHISALVICGMQTEYCVESTVRR 120
           EGWQLMPGLHQQPEDLHLPKRGSDAFHHTELQAMLKMRHISALVICGMQTEYCVESTVRR
Sbjct: 61  EGWQLMPGLHQQPEDLHLPKRGSDAFHHTELQAMLKMRHISALVICGMQTEYCVESTVRR 120

Query: 121 ALALGYPVMLAADAHTTAPNGVLTVAQVIAHHHATLAGLGSYGVRASIRPVADIRF 176
           ALALGYPVMLAADAHTTAPNGVLTVAQVIAHHHATLAGLGSYGVRASIRPVADIRF
Sbjct: 121 ALALGYPVMLAADAHTTAPNGVLTVAQVIAHHHATLAGLGSYGVRASIRPVADIRF 176


>gi|300310740|ref|YP_003774832.1| isochorismatase family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 227

 Score = 56.2 bits (134), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 9/108 (8%)

Query: 56  LQRGSEGWQLMPGLHQQPEDLHLPKRGSDAFHHTELQAMLKMRHISALVICGMQTEYCVE 115
           L RG  G Q++P L     ++ + K G  AF+ T+L A L+ R I+ L++ G+ TE CV+
Sbjct: 105 LVRGEPGNQILPQLTPMAGEIVIDKPGKGAFYATDLHAQLQERGITHLLVAGVTTEVCVQ 164

Query: 116 STVRRALALGYPVMLAADAHTTAPNGVLTVAQVIAHHHATLAGLGSYG 163
           +++R A   GY  ++  DA           +   A H ATL  L + G
Sbjct: 165 TSMREANDRGYECLVVEDA---------CASYFPAFHRATLDMLTAQG 203


>gi|300310060|ref|YP_003774152.1| nicotinamidase-like protein
           [Herbaspirillum seropedicae SmR1]
          Length = 202

 Score = 55.5 bits (132), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 57/126 (45%), Gaps = 3/126 (2%)

Query: 4   ALLIIDIQHALCHGPDAVENSAAVIDRVNQLADQARAAGAPVIFVQHEDEDA---LQRGS 60
           AL+IID Q     G   +    A +  V  L + ARAA APVI V H  +          
Sbjct: 24  ALVIIDHQTEYTTGRAPLAGIGAAVAEVALLLEHARAAAAPVIHVVHHGKPGGAMFDPQG 83

Query: 61  EGWQLMPGLHQQPEDLHLPKRGSDAFHHTELQAMLKMRHISALVICGMQTEYCVESTVRR 120
               ++ G+  QP +  + K   ++F  T L   LK     +L+I G  T  CV +TVR 
Sbjct: 84  PHVAIIDGVQPQPGEAVITKGLPNSFAGTTLDETLKKTGRKSLIIAGFATHMCVSATVRS 143

Query: 121 ALALGY 126
           AL  GY
Sbjct: 144 ALDHGY 149


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 575,568
Number of extensions: 23357
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 3
Length of query: 176
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,245,805
Effective search space: 120843085
Effective search space used: 120843085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)