BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0292.p
         (488 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313869|ref|YP_003777961.1| superfamily II helicase [Herbas...   967   0.0  

>gi|300313869|ref|YP_003777961.1| superfamily II helicase
           [Herbaspirillum seropedicae SmR1]
          Length = 829

 Score =  967 bits (2501), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/488 (100%), Positives = 488/488 (100%)

Query: 1   VPQPDGLGLTLRDYQRYGVAWMQYLRTHGLAGILADDMGLGKTAQVLAHVLIEKQAGRLD 60
           VPQPDGLGLTLRDYQRYGVAWMQYLRTHGLAGILADDMGLGKTAQVLAHVLIEKQAGRLD
Sbjct: 342 VPQPDGLGLTLRDYQRYGVAWMQYLRTHGLAGILADDMGLGKTAQVLAHVLIEKQAGRLD 401

Query: 61  LPVLVVAPTSLLFNWQQEARRITPDLRVLLLHGQERAQHFSALASGQVDLVLTSYPLLWR 120
           LPVLVVAPTSLLFNWQQEARRITPDLRVLLLHGQERAQHFSALASGQVDLVLTSYPLLWR
Sbjct: 402 LPVLVVAPTSLLFNWQQEARRITPDLRVLLLHGQERAQHFSALASGQVDLVLTSYPLLWR 461

Query: 121 DLDQLLPQRWHMLVLDEAQTVKNAASRSAAAARRLQARHRLCMTGTPLENHLGELWSQFH 180
           DLDQLLPQRWHMLVLDEAQTVKNAASRSAAAARRLQARHRLCMTGTPLENHLGELWSQFH
Sbjct: 462 DLDQLLPQRWHMLVLDEAQTVKNAASRSAAAARRLQARHRLCMTGTPLENHLGELWSQFH 521

Query: 181 FLMPGFLGDARSFARLWRKPIEEQGQTVRARLLAQRVRPFILRRRKQDVLQELPPRSEII 240
           FLMPGFLGDARSFARLWRKPIEEQGQTVRARLLAQRVRPFILRRRKQDVLQELPPRSEII
Sbjct: 522 FLMPGFLGDARSFARLWRKPIEEQGQTVRARLLAQRVRPFILRRRKQDVLQELPPRSEII 581

Query: 241 ERLPLQGRQRELYESVRMAADKQVRRALERRGLGGSQVTVMDALLKLRQVCCDPYLLKQG 300
           ERLPLQGRQRELYESVRMAADKQVRRALERRGLGGSQVTVMDALLKLRQVCCDPYLLKQG
Sbjct: 582 ERLPLQGRQRELYESVRMAADKQVRRALERRGLGGSQVTVMDALLKLRQVCCDPYLLKQG 641

Query: 301 RMPKGLERAKIDWLCDTLPALVAEGRRILVFSQFTGMLKLIAAQLEPLQLPYLMLTGETE 360
           RMPKGLERAKIDWLCDTLPALVAEGRRILVFSQFTGMLKLIAAQLEPLQLPYLMLTGETE
Sbjct: 642 RMPKGLERAKIDWLCDTLPALVAEGRRILVFSQFTGMLKLIAAQLEPLQLPYLMLTGETE 701

Query: 361 PAARADVIAGFQQEQTPLMLVSLKAGGVGLNLTAADTVVLVDPWWNPAVEEQAIARAHRL 420
           PAARADVIAGFQQEQTPLMLVSLKAGGVGLNLTAADTVVLVDPWWNPAVEEQAIARAHRL
Sbjct: 702 PAARADVIAGFQQEQTPLMLVSLKAGGVGLNLTAADTVVLVDPWWNPAVEEQAIARAHRL 761

Query: 421 GQQRQVFVYKLVIEGSIEERLLELQARKSALAEGMLGRDDATTVKFGEEELQALLAPLGA 480
           GQQRQVFVYKLVIEGSIEERLLELQARKSALAEGMLGRDDATTVKFGEEELQALLAPLGA
Sbjct: 762 GQQRQVFVYKLVIEGSIEERLLELQARKSALAEGMLGRDDATTVKFGEEELQALLAPLGA 821

Query: 481 GIAEKILA 488
           GIAEKILA
Sbjct: 822 GIAEKILA 829


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,550,504
Number of extensions: 65522
Number of successful extensions: 217
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 399
Effective length of database: 1,198,455
Effective search space: 478183545
Effective search space used: 478183545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 132 (55.5 bits)