BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0286.p
         (316 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313864|ref|YP_003777956.1| enzyme involved in meta-pathway...   641   0.0  
gi|300312311|ref|YP_003776403.1| enzyme involved in meta-pathway...    70   3e-13
gi|300310336|ref|YP_003774428.1| hypothetical protein Hsero_1003...    60   2e-10

>gi|300313864|ref|YP_003777956.1| enzyme involved in meta-pathway of
           phenol degradation protein [Herbaspirillum seropedicae
           SmR1]
          Length = 316

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/316 (99%), Positives = 314/316 (99%)

Query: 1   MREHHKHAATLALALLPALASAYDQPTVNMGGTSFFDGAPLPGGPGFYFVEYLTYSKATK 60
           MREH KHAATLALALLPALASAYDQPTVNMGGTSFFDGAPLPGGPGFYFVEYLTYSKATK
Sbjct: 1   MREHRKHAATLALALLPALASAYDQPTVNMGGTSFFDGAPLPGGPGFYFVEYLTYSKATK 60

Query: 61  LVDNNGNRLGFPATQDISVFAPVTQFIYVPPGAKFGNKQLGFQVLVPWVASAKVDDGANN 120
           LVDNNGNRLGFPATQDISVFAPVTQFIYVPPGAKFGNKQLGFQVLVPWVASAKVDDGANN
Sbjct: 61  LVDNNGNRLGFPATQDISVFAPVTQFIYVPPGAKFGNKQLGFQVLVPWVASAKVDDGANN 120

Query: 121 AVLRGNTGIGDISAGVSVQYDPIMGAQGPLYAQRFELQFILPTGAYDRNATVNPGSNTWS 180
           AVLRGNTGIGDISAGVSVQYDPIMGAQGPLYAQRFELQFILPTGAYDRNATVNPGSNTW+
Sbjct: 121 AVLRGNTGIGDISAGVSVQYDPIMGAQGPLYAQRFELQFILPTGAYDRNATVNPGSNTWA 180

Query: 181 FDPYWAGTLWASQNLSFSWRLHYLWNARNNAPSAAFGNNVSSTQAGQAVHANFAAEYVLN 240
           FDPYWAGTLWASQNLSFSWRLHYLWNARNNAPSAAFGNNVSSTQAGQA HANFAAEYVLN
Sbjct: 181 FDPYWAGTLWASQNLSFSWRLHYLWNARNNAPSAAFGNNVSSTQAGQAAHANFAAEYVLN 240

Query: 241 PTWTVGAAGYWLQQVTDTKVNGADVSGRRERVVGLGPAAMMRLSERDLLFFNVYQEFAVR 300
           PTWTVGAAGYWLQQVTDTKVNGADVSGRRERVVGLGPAAMMRLSERDLLFFNVYQEFAVR
Sbjct: 241 PTWTVGAAGYWLQQVTDTKVNGADVSGRRERVVGLGPAAMMRLSERDLLFFNVYQEFAVR 300

Query: 301 NRAENSKFQIRYDHHF 316
           NRAENSKFQIRYDHHF
Sbjct: 301 NRAENSKFQIRYDHHF 316


>gi|300312311|ref|YP_003776403.1| enzyme involved in meta-pathway of
           phenol degradation protein [Herbaspirillum seropedicae
           SmR1]
          Length = 316

 Score = 69.7 bits (169), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 69/163 (42%), Gaps = 17/163 (10%)

Query: 157 LQFILPTGAYDRNATVNPGSNTWSFDPYWAGTLWASQNLSFSWRLHYLWNARNNAPSAAF 216
           L    PTGAY  +   N G N W++ P+   T   S  L  S ++    N  N  P+  +
Sbjct: 168 LMIQAPTGAYSTSKAFNAGVNHWTYSPFVGATYITSSGLELSTQVSLNVNTVN--PATRY 225

Query: 217 GNNVSSTQA---GQAVHANFAAEYVLNPTWTVGAAGYWLQQVTDTKVNGADVSGRRERVV 273
            + V   Q    GQ +            +WT G AGY  +Q++D    G+   G R RV 
Sbjct: 226 RSGVEYRQEFAIGQHIQ-----------SWTAGLAGYVYRQLSDDSGPGSG-DGNRGRVY 273

Query: 274 GLGPAAMMRLSERDLLFFNVYQEFAVRNRAENSKFQIRYDHHF 316
            LGPA         L+  + YQEF  RNRAE     +R    F
Sbjct: 274 ALGPAVSFAQPGLPLVTLHGYQEFGARNRAEGYNLALRLAMTF 316


>gi|300310336|ref|YP_003774428.1| hypothetical protein Hsero_1003
           [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 119/288 (41%), Gaps = 38/288 (13%)

Query: 1   MREHHKHAATLALALLPALASAYDQPTVNMGGTSFFDG------APLPGGPGFYFVEYLT 54
           M+     A  LA   L  +A+         G + F  G      A LP  PG + VE   
Sbjct: 1   MKRGFVPACRLATCALLTMAAGPAAYAFEGGVSPFLTGSTSEYIAALPPIPGLFAVEQFN 60

Query: 55  YSKATKLVDNNGNRLGFPATQDISVFAPVTQFIYVPPGAKFGNKQLGFQV---LVPWVAS 111
           YS +  L DNNGN+L  P     S ++  T+ +     A +G + LG +V   LV  V S
Sbjct: 61  YSSSNGLYDNNGNKLPIPFKS--SAYSATTRLL-----ASYGVQWLGAKVYSQLVLPVVS 113

Query: 112 AKVDDGANNAVLRGNTGIGDISAG-VSVQYDPIMGAQGPLYAQRFELQFILPTGAYD-RN 169
              +   ++     + G+ +++A  V +++D             F     L TG+Y    
Sbjct: 114 LHTEVAGHSET---HNGLSNVTATPVLLRWDVAAHTN-----VTFGFDISLETGSYSPTR 165

Query: 170 ATVNPGSNTWSFDPYWAGTLWASQNLSFSWRLHYLWNARNNAPSAAFGNNVSSTQAGQAV 229
            +V  G  +W   P  A        L        L N RN++         ++ ++G A 
Sbjct: 166 PSVAVGYTSW--QPVLAVRHNNPDGLDLGISNRLLINDRNSS---------TNYRSGTAY 214

Query: 230 HANFAAEYVLNPTWTVGAAGYWLQQVTDTKVNGADVSGRRERVVGLGP 277
            A+F   + +   W  G  G +L Q TD + NGAD++G R R + LGP
Sbjct: 215 VADFIGGWNVG-KWKFGVTGSYLNQFTDDRQNGADITGNRARSLSLGP 261


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,071,919
Number of extensions: 48239
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 3
Length of query: 316
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 231
Effective length of database: 1,217,395
Effective search space: 281218245
Effective search space used: 281218245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)