BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0277.p
         (383 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313856|ref|YP_003777948.1| hypothetical protein Hsero_4574...   754   0.0  

>gi|300313856|ref|YP_003777948.1| hypothetical protein Hsero_4574
           [Herbaspirillum seropedicae SmR1]
          Length = 380

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/383 (97%), Positives = 375/383 (97%), Gaps = 3/383 (0%)

Query: 1   MATALPALMPASLQRVLQARLPRVIQREPDEDDASRWRHWELGGRTVQIAQPVTFTPYAS 60
           MATALPALMPASLQR LQARLPRVIQREPDEDDASRWRHWELGGRTVQIAQPVTFTPYAS
Sbjct: 1   MATALPALMPASLQRRLQARLPRVIQREPDEDDASRWRHWELGGRTVQIAQPVTFTPYAS 60

Query: 61  ARPCSARCRFCSETLNDGGPHAAALRPGLRYSAQLRQALAALQGLPLSWSLSGLETTDDA 120
           ARPCSARCRFCSETLNDGGPHAAALRPGLRYSAQLRQALAALQGLPLSWSLSGLETTDDA
Sbjct: 61  ARPCSARCRFCSETLNDGGPHAAALRPGLRYSAQLRQALAALQGLPLSWSLSGLETTDDA 120

Query: 121 GWMLSMLDVLQEHARHSPVQGSVLYTNGAGLVGSSGAALVARLQDFGLGWVELSRHHHEA 180
           GWMLSMLDVLQEHARHSPVQGSVLYTNGAGLVGS GAALVARLQDFGLGWVELSRHHHEA
Sbjct: 121 GWMLSMLDVLQEHARHSPVQGSVLYTNGAGLVGSPGAALVARLQDFGLGWVELSRHHHEA 180

Query: 181 AANQAIMRFRSGQAVATQEGVEGVLAQLAQARSQLPVKLVCIVQQGGIDGLPALKAYLRW 240
           AANQAIMRFRSGQAVATQEGVEGVLAQLA    QLPVKLVCIVQQGGIDGLPALKAYLRW
Sbjct: 181 AANQAIMRFRSGQAVATQEGVEGVLAQLA---PQLPVKLVCIVQQGGIDGLPALKAYLRW 237

Query: 241 AQQQGVTAVILREFSQLGPQYRDNVTSRYIGAARIDVAELLAACLADPEFSAEAQLMHAT 300
           AQQQGVTAVILREFSQLGPQYRDNVT+RYIGAARIDVAELLAACLADPEFSAEAQLMHAT
Sbjct: 238 AQQQGVTAVILREFSQLGPQYRDNVTARYIGAARIDVAELLAACLADPEFSAEAQLMHAT 297

Query: 301 SGYYFWNVLLHWRGMQLTFEASDYLRMHQRHASGRVYKLVFHANGRLCGGWNPDEHVLLE 360
           SGYYFWNVLLHWRGMQLTFEASDYLRMHQRHASGRVYKLVFHANGRLCGGWNPDEHVLLE
Sbjct: 298 SGYYFWNVLLHWRGMQLTFEASDYLRMHQRHASGRVYKLVFHANGRLCGGWNPDEHVLLE 357

Query: 361 TDTSVTTRSRAVLPLMPSPWSPS 383
           T TSVT RSRAVLPLMPSPWSPS
Sbjct: 358 TGTSVTARSRAVLPLMPSPWSPS 380


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,190,169
Number of extensions: 46331
Number of successful extensions: 185
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 296
Effective length of database: 1,207,925
Effective search space: 357545800
Effective search space used: 357545800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)